Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0005680

Physical Location & Seq

Genomic Coordinates Reverse (-)

28484129 .. 28486077

Gene Structure 1949 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G75860.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 894 bp

ATGTCGCGCGTTCTCACTTGCCCACCGCTTGTGTTTGCAAGAAACCACGTTGGCGTTCAAAACTTGGTCGAATCGACTAAGCTTAAAAGAATCACACTTGATTCAAAAAAGGCGCACCGGATAGAGAAGAAGGAAAAGAAGGAGAAGAGAAAAGAAAAGAAAGAAACTAAGCGTGAGAAATCGCATAAACATTCGATTAAAGCAACTGATAATCATCACAAGCTAATATTTCTTCCTTCCAAGAAAGTGTCAGATGAGTCTGACTCACTAGAGAAGAGTGGTTTGACAGATGAGCTTGAGGAACCTCAAAAACACCTTGGATATTTGTCTGATGGAAGTCAGAATAGTAAGAAGAGGATTAGAGATGATTCTCCTCCGGCTGTTGAAAGTCTCATCAAAGCTGCACCTGTAGCAGGTAAACCTCTACGGATTAGAATGGTCTTCAAAAAACCAAAGGAGGAAGTTCCTACTCTGCCTAGAGAGGCTGTTGTTTGCTCCACTACAGTTGCAAAGTCGCTCAGTCACCAAGATGTCATAACAAGTTCTATCTCAAGTTCAAAAACATCCGAGCTTGAAAAGAATCTGCCGTCAACATCAATAGCGGCAATAGATGAAACAAAGAAGAGAAAGAAACACAGATCTAGCAAAGAAGATCAATACAATGCATTGTTTGATGGTTGGACTCCTCCTTCCATGTGTATTGCTGATGCATCTTCAAATGACAATGGTGATTATTGGCTATTTGGGAACAAGACGCAAGAGGTGCTTAAGCCCAAAGCAGCAGTCAAGGTTGATGATGACACGATGATGAGACCGGGAGATTCATCTTGGCCTAGAGCTCAATTTTTGTCTGAAGTTGGGATTTATTCTTTACCTTATACTGTCCCGTTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

297

Amino Acids

33.39

Weight (kDa)

9.49

Isoelectric Point (pI)

43.99

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005680)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G20100 AT1G20100 AT1G75860 AT1G75860 AT1G76230
fragaria_vesca	FvH4_2g38160 FvH4_2g38160 FvH4_6g14711
prunus_persica	Prupe.1G362500_v2.0.a1 Prupe.1G362800_v2.0.a1 Prupe.1G362800_v2.0.a1 Prupe.1G362800_v2.0.a1
pyrus_communis	pycom15g00820
rosa_chinensis	RchiOBHm_Chr6g0303321
rosa_laevigata	RLG00000011092 RLG00000024466
rosa_multiflora	Rmu_sc0007252.1_g000006 Rmu_sc0027227.1_g000002
rosa_roxburghii	Rroxscaffold_6G00413280 Rroxscaffold_7G00164870
rosa_rugosa	Rorug06G0320400 Rorug06G0320500
rosa_samantha	Rh6AG434800 Rh6BG468300 Rh6CG446800 Rh6DG433600 Rh6DG433700
rosa_wichuraiana	Rw6G037650

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	404
AccII	CGCG	2 cut(s)	7, 9
AciI	CCGC	2 cut(s)	26, 602
AcuI	CTGAAG	1 cut(s)	873
AfiI	CCNNNNNNNGG	1 cut(s)	413
AflII	CTTAAG	1 cut(s)	767
AgsI	TTSAA	7 cut(s)	59, 105, 386, 445, 558, 575, 717
AluBI	AGCT	6 cut(s)	82, 223, 295, 401, 571, 839
AluI	AGCT	6 cut(s)	82, 223, 295, 401, 571, 839
Alw21I	GWGCWC	1 cut(s)	841
Alw26I	GTCTC	2 cut(s)	395, 805
AoxI	GGCC	1 cut(s)	830
ApeKI	GCWGC	2 cut(s)	401, 779
ArsI	GACNNNNNNTTYG	2 cut(s)	768, 800
AspLEI	GCGC	2 cut(s)	9, 115
AsuC2I	CCSGG	1 cut(s)	816
AsuHPI	GGTGA	2 cut(s)	515, 740
BanII	GRGCYC	1 cut(s)	841
BbsI	GAAGAC	1 cut(s)	433
Bbv12I	GWGCWC	1 cut(s)	841
BbvI	GCAGC	2 cut(s)	388, 791
BccI	CCATC	2 cut(s)	326, 668
BceAI	ACGGC	1 cut(s)	571
BcnI	CCSGG	1 cut(s)	816
BcoDI	GTCTC	2 cut(s)	395, 805
BfaI	CTAG	4 cut(s)	269, 477, 642, 834
BfmI	CTRYAG	2 cut(s)	408, 501
BfrI	CTTAAG	1 cut(s)	767
BfuAI	ACCTGC	1 cut(s)	404
BglII	AGATCT	1 cut(s)	638
BisI	GCNGC	3 cut(s)	402, 603, 780
BlsI	GCNGC	3 cut(s)	403, 604, 781
Bme1390I	CCNGG	1 cut(s)	816
BmiI	GGNNCC	1 cut(s)	303
BmrFI	CCNGG	1 cut(s)	816
BmsI	GCATC	2 cut(s)	697, 719
BpiI	GAAGAC	1 cut(s)	433
BplI	GAGNNNNNCTC	2 cut(s)	248, 280
BpuEI	CTTGAG	2 cut(s)	317, 535
BpuMI	CCSGG	1 cut(s)	816
BsaBI	GATNNNNATC	1 cut(s)	213
BsaI	GGTCTC	1 cut(s)	805
BsaJI	CCNNGG	1 cut(s)	316
BsaWI	WCCGGW	1 cut(s)	117
Bsc4I	CCNNNNNNNGG	1 cut(s)	413
Bse8I	GATNNNNATC	1 cut(s)	213
BseDI	CCNNGG	1 cut(s)	316
BseGI	GGATG	1 cut(s)	563
BseJI	GATNNNNATC	1 cut(s)	213
BseLI	CCNNNNNNNGG	1 cut(s)	413
BseMII	CTCAG	1 cut(s)	532
BseRI	GAGGAG	2 cut(s)	363, 675
BseXI	GCAGC	2 cut(s)	388, 791
BsgI	GTGCAG	1 cut(s)	387
Bsh1236I	CGCG	2 cut(s)	7, 9
BshFI	GGCC	1 cut(s)	832
BsiHKAI	GWGCWC	1 cut(s)	841
BsiSI	CCGG	3 cut(s)	118, 377, 815
BslFI	GGGAC	1 cut(s)	869
BslI	CCNNNNNNNGG	1 cut(s)	413
BsmAI	GTCTC	2 cut(s)	395, 805
BsmFI	GGGAC	1 cut(s)	869
BsnI	GGCC	1 cut(s)	832
Bso31I	GGTCTC	1 cut(s)	805
Bsp1286I	GDGCHC	1 cut(s)	841
Bsp143I	GATC	2 cut(s)	638, 652
BspACI	CCGC	2 cut(s)	26, 602
BspANI	GGCC	1 cut(s)	832
BspCNI	CTCAG	1 cut(s)	531
BspFNI	CGCG	2 cut(s)	7, 9
BspLI	GGNNCC	1 cut(s)	303
BspMI	ACCTGC	1 cut(s)	404
BspTI	CTTAAG	1 cut(s)	767
BspTNI	GGTCTC	1 cut(s)	805
BssECI	CCNNGG	1 cut(s)	316
BssMI	GATC	2 cut(s)	638, 652
BssT1I	CCWWGG	1 cut(s)	316
Bst4CI	ACNGT	2 cut(s)	505, 883
Bst6I	CTCTTC	4 cut(s)	140, 269, 347, 617
BstAFI	CTTAAG	1 cut(s)	767
BstAPI	GCANNNNNTGC	1 cut(s)	763
BstDEI	CTNAG	3 cut(s)	78, 168, 518
BstENI	CCTNNNNNAGG	1 cut(s)	411
BstF5I	GGATG	1 cut(s)	563
BstFNI	CGCG	2 cut(s)	7, 9
BstHHI	GCGC	2 cut(s)	9, 115
BstKTI	GATC	2 cut(s)	641, 655
BstMAI	GTCTC	2 cut(s)	395, 805
BstMBI	GATC	2 cut(s)	638, 652
BstMWI	GCNNNNNNNGC	2 cut(s)	410, 763
BstSCI	CCNGG	1 cut(s)	814
BstSFI	CTRYAG	2 cut(s)	408, 501
BstUI	CGCG	2 cut(s)	7, 9
BstV1I	GCAGC	2 cut(s)	388, 791
BstV2I	GAAGAC	1 cut(s)	433
BstX2I	RGATCY	1 cut(s)	638
BstYI	RGATCY	1 cut(s)	638
BsuRI	GGCC	1 cut(s)	832
BtsCI	GGATG	1 cut(s)	563
BveI	ACCTGC	1 cut(s)	404
CfoI	GCGC	2 cut(s)	9, 115
CseI	GACGC	1 cut(s)	763
CspCI	CAANNNNNGTGG	2 cut(s)	487, 522
CviAII	CATG	1 cut(s)	694
DdeI	CTNAG	3 cut(s)	78, 168, 518
DpnI	GATC	2 cut(s)	640, 654
DpnII	GATC	2 cut(s)	638, 652
Eam1104I	CTCTTC	4 cut(s)	140, 269, 347, 617
EarI	CTCTTC	4 cut(s)	140, 269, 347, 617
Ecl136II	GAGCTC	1 cut(s)	839
Eco130I	CCWWGG	1 cut(s)	316
Eco24I	GRGCYC	1 cut(s)	841
Eco31I	GGTCTC	1 cut(s)	805
Eco53kI	GAGCTC	1 cut(s)	839
Eco57I	CTGAAG	1 cut(s)	873
EcoICRI	GAGCTC	1 cut(s)	839
EcoNI	CCTNNNNNAGG	1 cut(s)	411
EcoT14I	CCWWGG	1 cut(s)	316
EcoT22I	ATGCAT	2 cut(s)	667, 712
EcoT38I	GRGCYC	1 cut(s)	841
ErhI	CCWWGG	1 cut(s)	316
FaeI	CATG	1 cut(s)	697
FaiI	YATR	4 cut(s)	186, 536, 695, 879
FalI	AAGNNNNNCTT	2 cut(s)	750, 782
FaqI	GGGAC	1 cut(s)	869
FatI	CATG	1 cut(s)	693
Fnu4HI	GCNGC	3 cut(s)	402, 603, 780
FokI	GGATG	1 cut(s)	550
FriOI	GRGCYC	1 cut(s)	841
Fsp4HI	GCNGC	3 cut(s)	402, 603, 780
FspBI	CTAG	4 cut(s)	269, 477, 642, 834
GlaI	GCGC	2 cut(s)	8, 114
GluI	GCNGC	3 cut(s)	402, 603, 780
HaeIII	GGCC	1 cut(s)	832
HapII	CCGG	3 cut(s)	118, 377, 815
HgaI	GACGC	1 cut(s)	763
HhaI	GCGC	2 cut(s)	9, 115
Hin1II	CATG	1 cut(s)	697
Hin6I	GCGC	2 cut(s)	7, 113
HinP1I	GCGC	2 cut(s)	7, 113
HincII	GTYRAC	1 cut(s)	591
HindII	GTYRAC	1 cut(s)	591
HindIII	AAGCTT	1 cut(s)	80
HinfI	GANTC	9 cut(s)	71, 90, 101, 257, 263, 368, 580, 682, 821
HpaII	CCGG	3 cut(s)	118, 377, 815
HphI	GGTGA	2 cut(s)	515, 740
Hpy166II	GTNNAC	2 cut(s)	419, 591
Hpy188I	TCNGA	6 cut(s)	253, 262, 331, 342, 568, 853
Hpy8I	GTNNAC	2 cut(s)	419, 591
HpyAV	CCTTC	4 cut(s)	124, 133, 246, 699
HpyCH4III	ACNGT	2 cut(s)	505, 883
HpyCH4IV	ACGT	1 cut(s)	48
HpyCH4V	TGCA	5 cut(s)	38, 404, 509, 665, 710
HpyF10VI	GCNNNNNNNGC	2 cut(s)	410, 763
HpyF3I	CTNAG	3 cut(s)	78, 168, 518
HpySE526I	ACGT	1 cut(s)	48
Hsp92II	CATG	1 cut(s)	697
HspAI	GCGC	2 cut(s)	7, 113
Kzo9I	GATC	2 cut(s)	638, 652
LmnI	GCTCC	1 cut(s)	500
LpnPI	CCDG	5 cut(s)	131, 390, 399, 420, 828
Lsp1109I	GCAGC	2 cut(s)	388, 791
LweI	GCATC	2 cut(s)	697, 719
MaeI	CTAG	4 cut(s)	269, 477, 642, 834
MaeII	ACGT	1 cut(s)	48
MaeIII	GTNAC	1 cut(s)	521
MalI	GATC	2 cut(s)	640, 654
MboI	GATC	2 cut(s)	638, 652
MboII	GAAGA	9 cut(s)	139, 157, 224, 286, 364, 433, 634, 662, 705
MflI	RGATCY	1 cut(s)	638
MhlI	GDGCHC	1 cut(s)	841
MluCI	AATT	1 cut(s)	842
MlyI	GAGTC	3 cut(s)	257, 266, 676
MmeI	TCCRAC	1 cut(s)	659
MnlI	CCTC	9 cut(s)	292, 315, 348, 384, 432, 451, 475, 696, 754
Mph1103I	ATGCAT	2 cut(s)	667, 712
MseI	TTAA	3 cut(s)	84, 198, 768
MslI	CAYNNNNRTG	2 cut(s)	528, 806
MspCI	CTTAAG	1 cut(s)	767
MspI	CCGG	3 cut(s)	118, 377, 815
MspR9I	CCNGG	1 cut(s)	816
MvnI	CGCG	2 cut(s)	7, 9
MwoI	GCNNNNNNNGC	2 cut(s)	410, 763
NciI	CCSGG	1 cut(s)	816
NdeII	GATC	2 cut(s)	638, 652
NlaIII	CATG	1 cut(s)	697
NlaIV	GGNNCC	1 cut(s)	303
NmuCI	GTSAC	1 cut(s)	521
NsiI	ATGCAT	2 cut(s)	667, 712
PfeI	GAWTC	6 cut(s)	71, 90, 101, 368, 580, 821
PkrI	GCNGC	3 cut(s)	403, 604, 781
PleI	GAGTC	3 cut(s)	257, 265, 676
PpsI	GAGTC	3 cut(s)	257, 265, 676
Psp124BI	GAGCTC	1 cut(s)	841
PspN4I	GGNNCC	1 cut(s)	303
PsuI	RGATCY	1 cut(s)	638
RseI	CAYNNNNRTG	2 cut(s)	528, 806
SacI	GAGCTC	1 cut(s)	841
SaqAI	TTAA	3 cut(s)	84, 198, 768
SatI	GCNGC	3 cut(s)	402, 603, 780
Sau3AI	GATC	2 cut(s)	638, 652
SchI	GAGTC	3 cut(s)	257, 266, 676
ScrFI	CCNGG	1 cut(s)	816
SduI	GDGCHC	1 cut(s)	841
SfaNI	GCATC	2 cut(s)	697, 719
SfcI	CTRYAG	2 cut(s)	408, 501
SmiMI	CAYNNNNRTG	2 cut(s)	528, 806
SmlI	CTYRAG	3 cut(s)	296, 550, 767
SmoI	CTYRAG	3 cut(s)	296, 550, 767
Sse9I	AATT	1 cut(s)	842
SsiI	CCGC	2 cut(s)	26, 602
SspI	AATATT	1 cut(s)	228
SspMI	CTAG	4 cut(s)	269, 477, 642, 834
SstI	GAGCTC	1 cut(s)	841
StyD4I	CCNGG	1 cut(s)	814
StyI	CCWWGG	1 cut(s)	316
TaaI	ACNGT	2 cut(s)	505, 883
TaiI	ACGT	1 cut(s)	51
TaqI	TCGA	3 cut(s)	69, 74, 194
TasI	AATT	1 cut(s)	842
TauI	GCSGC	1 cut(s)	605
TfiI	GAWTC	6 cut(s)	71, 90, 101, 368, 580, 821
Tru1I	TTAA	3 cut(s)	84, 198, 768
Tru9I	TTAA	3 cut(s)	84, 198, 768
TseFI	GTSAC	1 cut(s)	521
TseI	GCWGC	2 cut(s)	401, 779
Tsp45I	GTSAC	1 cut(s)	521
TspDTI	ATGAA	2 cut(s)	627, 813
TspGWI	ACGGA	1 cut(s)	442
Vha464I	CTTAAG	1 cut(s)	767
XagI	CCTNNNNNAGG	1 cut(s)	411
XspI	CTAG	4 cut(s)	269, 477, 642, 834
Zsp2I	ATGCAT	2 cut(s)	667, 712

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.