Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6C

Orthogroup ID

OG0005680

Physical Location & Seq

Genomic Coordinates Reverse (-)

62492843 .. 62495218

Gene Structure 2376 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6CG446800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 798 bp

ATGTTTGATTGGCCTTCTTTCTTCCAATCTTATTCACTTTTTATACTGGTGCTTCAAAAGCTCCAGAGAGAATTGGAGAAGAAAGCCAAGACACATAGGAAGAAAGAGAAGAAAGAGAAGAAGGAGAAGAAAGAGAAGGGGGAGAAGAGAAAATGGCATAAAGAGGATGAGTTATCTACTTGCGCTGTTATTTGGGGAGTGGATGCAATAGCAAGGGGCCCTCAAGTAGTAGAATCAAATCAACTGGAGAAAAGTGACATTACCGAAGAAAATGAATTACCAACCTTGTCTGATAACATTTGCTACTTGTCTGATGGCATCCAAAGTGGCACAAAGAGGAAAAGAACCATCATTCGCATTAAATCATTGCCCAAGCGCAGTGATACAGAGTCCTCACATGCCTCTTGTGCCGTGCATACTTCTGGGAAGTCAGATTTCCAAACAGATCTAAACATGACAGAAATTGTTCATGCACCTAGTGCAGAGACAAATGTAGAATTTGAGGAAGCCACTTGTGCTTCGGACCAAAAGGTGTCAACATGTGAAGACCATACGGAGGGTTTACTGCACCAGTCTCTGATTGGTAATTGGGTTCAACCTCAACTTCAGACAGCACCCGACAATTGTGGTGATGAAGATTGGCTTTTTGAGACGAAGCAGGAAAATAAACGTGGTTTTGAAAGATTCAAAGCTAGCAATGAGGTGGTGTCCCGTTGTTCAAGTCAGACGTTGTGGCCACAAGCACACTGGTTACCTGATCCTGGCTTATCCGCACTACCCTTTACTGTTCCATTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

265

Amino Acids

30.25

Weight (kDa)

5.96

Isoelectric Point (pI)

50.36

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005680)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G20100 AT1G20100 AT1G75860 AT1G75860 AT1G76230
fragaria_vesca	FvH4_2g38160 FvH4_2g38160 FvH4_6g14711
prunus_persica	Prupe.1G362500_v2.0.a1 Prupe.1G362800_v2.0.a1 Prupe.1G362800_v2.0.a1 Prupe.1G362800_v2.0.a1
pyrus_communis	pycom15g00820
rosa_chinensis	RchiOBHm_Chr6g0303321
rosa_laevigata	RLG00000011092 RLG00000024466
rosa_multiflora	Rmu_sc0007252.1_g000006 Rmu_sc0027227.1_g000002
rosa_roxburghii	Rroxscaffold_6G00413280 Rroxscaffold_7G00164870
rosa_rugosa	Rorug06G0320400 Rorug06G0320500
rosa_samantha	Rh6AG434800 Rh6BG468300 Rh6CG446800 Rh6DG433600 Rh6DG433700
rosa_wichuraiana	Rw6G037650

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	771
AclWI	GGATC	1 cut(s)	752
AcoI	YGGCCR	1 cut(s)	734
AcsI	RAATTY	1 cut(s)	497
AcuI	CTGAAG	1 cut(s)	590
AdeI	CACNNNGTG	1 cut(s)	479
AfiI	CCNNNNNNNGG	2 cut(s)	556, 761
AflIII	ACRYGT	1 cut(s)	539
AgsI	TTSAA	5 cut(s)	56, 596, 680, 688, 720
AjnI	CCWGG	1 cut(s)	760
AluBI	AGCT	2 cut(s)	61, 692
AluI	AGCT	2 cut(s)	61, 692
Alw26I	GTCTC	3 cut(s)	479, 579, 644
AlwI	GGATC	1 cut(s)	752
AlwNI	CAGNNNCTG	1 cut(s)	577
AoxI	GGCC	3 cut(s)	11, 217, 734
ApaI	GGGCCC	1 cut(s)	221
ApoI	RAATTY	1 cut(s)	497
Asp700I	GAANNNNTTC	1 cut(s)	465
AspLEI	GCGC	2 cut(s)	185, 378
AspS9I	GGNCC	3 cut(s)	217, 218, 523
AsuHPI	GGTGA	1 cut(s)	641
AsuNHI	GCTAGC	1 cut(s)	692
AvaII	GGWCC	1 cut(s)	523
BaeGI	GKGCMC	1 cut(s)	221
BalI	TGGCCA	1 cut(s)	736
BanII	GRGCYC	1 cut(s)	221
BbsI	GAAGAC	1 cut(s)	552
BccI	CCATC	2 cut(s)	308, 356
BceAI	ACGGC	1 cut(s)	395
BciT130I	CCWGG	1 cut(s)	762
BcoDI	GTCTC	3 cut(s)	479, 579, 644
BfaI	CTAG	2 cut(s)	477, 693
BglII	AGATCT	1 cut(s)	445
Bme1390I	CCNGG	1 cut(s)	762
Bme18I	GGWCC	1 cut(s)	523
BmgT120I	GGNCC	3 cut(s)	217, 218, 523
BmiI	GGNNCC	2 cut(s)	218, 219
BmrFI	CCNGG	1 cut(s)	762
BmsI	GCATC	2 cut(s)	193, 327
BmtI	GCTAGC	1 cut(s)	696
BpiI	GAAGAC	1 cut(s)	552
BpmI	CTGGAG	2 cut(s)	47, 266
BpuEI	CTTGAG	1 cut(s)	207
Bsc4I	CCNNNNNNNGG	2 cut(s)	556, 761
Bse1I	ACTGG	4 cut(s)	51, 249, 571, 752
Bse3DI	GCAATG	2 cut(s)	365, 703
BseBI	CCWGG	1 cut(s)	762
BseGI	GGATG	3 cut(s)	172, 208, 318
BseLI	CCNNNNNNNGG	2 cut(s)	556, 761
BseMI	GCAATG	2 cut(s)	365, 703
BseNI	ACTGG	4 cut(s)	51, 249, 571, 752
BseSI	GKGCMC	1 cut(s)	221
BsgI	GTGCAG	2 cut(s)	501, 551
BshFI	GGCC	3 cut(s)	13, 219, 736
BslFI	GGGAC	1 cut(s)	694
BslI	CCNNNNNNNGG	2 cut(s)	556, 761
BsmAI	GTCTC	3 cut(s)	479, 579, 644
BsmBI	CGTCTC	1 cut(s)	644
BsmFI	GGGAC	1 cut(s)	694
BsnI	GGCC	3 cut(s)	13, 219, 736
Bsp120I	GGGCCC	1 cut(s)	217
Bsp1286I	GDGCHC	1 cut(s)	221
Bsp143I	GATC	2 cut(s)	445, 757
BspACI	CCGC	1 cut(s)	771
BspANI	GGCC	3 cut(s)	13, 219, 736
BspLI	GGNNCC	2 cut(s)	218, 219
BspOI	GCTAGC	1 cut(s)	696
BspPI	GGATC	1 cut(s)	752
BsrDI	GCAATG	2 cut(s)	365, 703
BsrI	ACTGG	4 cut(s)	51, 249, 571, 752
BssMI	GATC	2 cut(s)	445, 757
Bst2UI	CCWGG	1 cut(s)	762
Bst4CI	ACNGT	1 cut(s)	787
Bst6I	CTCTTC	1 cut(s)	140
BstAPI	GCANNNNNTGC	1 cut(s)	479
BstC8I	GCNNGC	1 cut(s)	694
BstEII	GGTNACC	1 cut(s)	750
BstF5I	GGATG	3 cut(s)	172, 208, 318
BstHHI	GCGC	2 cut(s)	185, 378
BstKTI	GATC	2 cut(s)	448, 760
BstMAI	GTCTC	3 cut(s)	479, 579, 644
BstMBI	GATC	2 cut(s)	445, 757
BstMWI	GCNNNNNNNGC	4 cut(s)	58, 407, 479, 515
BstNI	CCWGG	1 cut(s)	762
BstNSI	RCATGY	2 cut(s)	401, 543
BstPI	GGTNACC	1 cut(s)	750
BstSCI	CCNGG	1 cut(s)	760
BstSLI	GKGCMC	1 cut(s)	221
BstV2I	GAAGAC	1 cut(s)	552
BstX2I	RGATCY	1 cut(s)	445
BstYI	RGATCY	1 cut(s)	445
BsuRI	GGCC	3 cut(s)	13, 219, 736
BtsCI	GGATG	3 cut(s)	172, 208, 318
BtsI	GCAGTG	1 cut(s)	385
BtsIMutI	CAGTG	2 cut(s)	385, 745
Cac8I	GCNNGC	1 cut(s)	694
CaiI	CAGNNNCTG	1 cut(s)	577
CfoI	GCGC	2 cut(s)	185, 378
Cfr13I	GGNCC	3 cut(s)	217, 218, 523
CviAII	CATG	4 cut(s)	398, 454, 470, 540
CviJI	RGCY	9 cut(s)	13, 61, 86, 219, 509, 643, 692, 736, 765
CviKI_1	RGCY	9 cut(s)	13, 61, 86, 219, 509, 643, 692, 736, 765
DpnI	GATC	2 cut(s)	447, 759
DpnII	GATC	2 cut(s)	445, 757
DraIII	CACNNNGTG	1 cut(s)	479
EaeI	YGGCCR	1 cut(s)	734
Eam1104I	CTCTTC	1 cut(s)	140
EarI	CTCTTC	1 cut(s)	140
Eco24I	GRGCYC	1 cut(s)	221
Eco47I	GGWCC	1 cut(s)	523
Eco57I	CTGAAG	1 cut(s)	590
Eco91I	GGTNACC	1 cut(s)	750
EcoO109I	RGGNCCY	2 cut(s)	217, 218
EcoO65I	GGTNACC	1 cut(s)	750
EcoRII	CCWGG	1 cut(s)	760
EcoT38I	GRGCYC	1 cut(s)	221
Esp3I	CGTCTC	1 cut(s)	644
FaeI	CATG	4 cut(s)	401, 457, 473, 543
FaiI	YATR	9 cut(s)	44, 96, 159, 399, 417, 455, 471, 541, 552
FalI	AAGNNNNNCTT	2 cut(s)	627, 659
FaqI	GGGAC	1 cut(s)	694
FatI	CATG	4 cut(s)	397, 453, 469, 539
FokI	GGATG	3 cut(s)	179, 215, 305
FriOI	GRGCYC	1 cut(s)	221
FspBI	CTAG	2 cut(s)	477, 693
GlaI	GCGC	2 cut(s)	184, 377
GsuI	CTGGAG	2 cut(s)	47, 266
HaeIII	GGCC	3 cut(s)	13, 219, 736
HhaI	GCGC	2 cut(s)	185, 378
Hin1II	CATG	4 cut(s)	401, 457, 473, 543
Hin6I	GCGC	2 cut(s)	183, 376
HinP1I	GCGC	2 cut(s)	183, 376
HincII	GTYRAC	1 cut(s)	537
HindII	GTYRAC	1 cut(s)	537
HinfI	GANTC	3 cut(s)	233, 389, 684
HphI	GGTGA	1 cut(s)	641
Hpy166II	GTNNAC	2 cut(s)	537, 563
Hpy188I	TCNGA	7 cut(s)	292, 313, 433, 523, 579, 609, 726
Hpy188III	TCNNGA	1 cut(s)	64
Hpy8I	GTNNAC	2 cut(s)	537, 563
HpyAV	CCTTC	3 cut(s)	24, 115, 130
HpyCH4III	ACNGT	1 cut(s)	787
HpyCH4IV	ACGT	2 cut(s)	670, 728
HpyCH4V	TGCA	5 cut(s)	206, 415, 473, 482, 568
HpyF10VI	GCNNNNNNNGC	4 cut(s)	58, 407, 479, 515
HpySE526I	ACGT	2 cut(s)	670, 728
Hsp92II	CATG	4 cut(s)	401, 457, 473, 543
HspAI	GCGC	2 cut(s)	183, 376
Kzo9I	GATC	2 cut(s)	445, 757
LmnI	GCTCC	1 cut(s)	66
LweI	GCATC	2 cut(s)	193, 327
MaeI	CTAG	2 cut(s)	477, 693
MaeII	ACGT	2 cut(s)	670, 728
MaeIII	GTNAC	2 cut(s)	254, 750
MalI	GATC	2 cut(s)	447, 759
MboI	GATC	2 cut(s)	445, 757
MfeI	CAATTG	1 cut(s)	622
MflI	RGATCY	1 cut(s)	445
MhlI	GDGCHC	1 cut(s)	221
MlsI	TGGCCA	1 cut(s)	736
MluCI	AATT	6 cut(s)	71, 275, 462, 497, 586, 622
MluNI	TGGCCA	1 cut(s)	736
MlyI	GAGTC	1 cut(s)	398
MnlI	CCTC	9 cut(s)	157, 231, 330, 403, 412, 496, 550, 609, 694
Mox20I	TGGCCA	1 cut(s)	736
MroXI	GAANNNNTTC	1 cut(s)	465
MscI	TGGCCA	1 cut(s)	736
MseI	TTAA	1 cut(s)	360
Msp20I	TGGCCA	1 cut(s)	736
MspR9I	CCNGG	1 cut(s)	762
MunI	CAATTG	1 cut(s)	622
MvaI	CCWGG	1 cut(s)	762
MwoI	GCNNNNNNNGC	4 cut(s)	58, 407, 479, 515
NdeII	GATC	2 cut(s)	445, 757
NheI	GCTAGC	1 cut(s)	692
NlaIII	CATG	4 cut(s)	401, 457, 473, 543
NlaIV	GGNNCC	2 cut(s)	218, 219
NmuCI	GTSAC	1 cut(s)	254
NspI	RCATGY	2 cut(s)	401, 543
PciI	ACATGT	1 cut(s)	539
PdmI	GAANNNNTTC	1 cut(s)	465
PfeI	GAWTC	2 cut(s)	233, 684
PleI	GAGTC	1 cut(s)	397
PpsI	GAGTC	1 cut(s)	397
PscI	ACATGT	1 cut(s)	539
Psp6I	CCWGG	1 cut(s)	760
PspEI	GGTNACC	1 cut(s)	750
PspGI	CCWGG	1 cut(s)	760
PspN4I	GGNNCC	2 cut(s)	218, 219
PspOMI	GGGCCC	1 cut(s)	217
PspPI	GGNCC	3 cut(s)	217, 218, 523
PstNI	CAGNNNCTG	1 cut(s)	577
PsuI	RGATCY	1 cut(s)	445
SaqAI	TTAA	1 cut(s)	360
Sau3AI	GATC	2 cut(s)	445, 757
Sau96I	GGNCC	3 cut(s)	217, 218, 523
SchI	GAGTC	1 cut(s)	398
ScrFI	CCNGG	1 cut(s)	762
SduI	GDGCHC	1 cut(s)	221
SfaNI	GCATC	2 cut(s)	193, 327
SinI	GGWCC	1 cut(s)	523
SmlI	CTYRAG	1 cut(s)	222
SmoI	CTYRAG	1 cut(s)	222
Sse9I	AATT	6 cut(s)	71, 275, 462, 497, 586, 622
SsiI	CCGC	1 cut(s)	771
SspMI	CTAG	2 cut(s)	477, 693
StyD4I	CCNGG	1 cut(s)	760
TaaI	ACNGT	1 cut(s)	787
TaiI	ACGT	2 cut(s)	673, 731
TasI	AATT	6 cut(s)	71, 275, 462, 497, 586, 622
TfiI	GAWTC	2 cut(s)	233, 684
Tru1I	TTAA	1 cut(s)	360
Tru9I	TTAA	1 cut(s)	360
TscAI	CASTG	2 cut(s)	385, 752
TseFI	GTSAC	1 cut(s)	254
Tsp45I	GTSAC	1 cut(s)	254
TspDTI	ATGAA	3 cut(s)	288, 458, 648
TspGWI	ACGGA	1 cut(s)	569
TspRI	CASTG	2 cut(s)	385, 752
VpaK11BI	GGWCC	1 cut(s)	523
XapI	RAATTY	1 cut(s)	497
XceI	RCATGY	2 cut(s)	401, 543
XcmI	CCANNNNNNNNNTGG	2 cut(s)	578, 744
XmnI	GAANNNNTTC	1 cut(s)	465
XspI	CTAG	2 cut(s)	477, 693

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.