Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr6

Orthogroup ID

OG0005680

Physical Location & Seq

Genomic Coordinates Reverse (-)

61921080 .. 61923329

Gene Structure 2250 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw6G037650.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 789 bp

ATGTTTGATTGGCCTTCTTTCTTCCAATCTTATTCACTTTTTATACTGGTGCTTCAAAAGCTCCAGAGAGAATTGGAGAAGAAAGCCAAGACACATAGGAAGAAAGAGAAGAAGGAGAAGAAAGAGAAGGGGGAGAAGAGAAAATGGCATAAAGAGGATGAGTTATCTACTTGCGCTGTTATTTGGGGAGTGGATGCAATAGCAAGGGGCCCTCAAGTAGAAGAATCAAATCAACTGGAGAAAAGTGACATTACCGAAGAACATGAATTACCAACCTTGTCTGATAACATTTGCTACTTGTCTGATGGCATCCAAAGTGGCACAAAGAGGAAAAGAACCAGCATTCGCATTAAATCATTGCCCAAGTGCAGTGATGCCGAGTCCTCACATGCCTCTTGTGCCGAGCATACTTCTGGGAAGTCAGATTTCCAAACAGATCTAAAGATGACAGAAATTGTTCATGCACCTAGTGCAGAGACAAATGGAGAATTTGAGGAAGCCACTTGTGCTTCGGACCAAAAGGTGTCAACATGTGAAGACCATATGGAGGGTTTACTGCACCAGTCTCTGATTGGTAATTGGGTTCAACCTCTACTTCGGACAGCACCCGACGATTGTGGTGATGTAGATTGGCTTTTTGAGACGAAGCAGGAAAATAAACGTGGTTTTGAAAGATTCAAAGCTAGCAATGAGGTGGTGTCCCGTTGTACAAGTCAGACGTTGTGGCCACAAGCACACTGGTTACCTGATCCTGGCTTATCCGCACTACCCTTTACTGTTCCATTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

262

Amino Acids

29.84

Weight (kDa)

5.78

Isoelectric Point (pI)

46.09

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005680)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G20100 AT1G20100 AT1G75860 AT1G75860 AT1G76230
fragaria_vesca	FvH4_2g38160 FvH4_2g38160 FvH4_6g14711
prunus_persica	Prupe.1G362500_v2.0.a1 Prupe.1G362800_v2.0.a1 Prupe.1G362800_v2.0.a1 Prupe.1G362800_v2.0.a1
pyrus_communis	pycom15g00820
rosa_chinensis	RchiOBHm_Chr6g0303321
rosa_laevigata	RLG00000011092 RLG00000024466
rosa_multiflora	Rmu_sc0007252.1_g000006 Rmu_sc0027227.1_g000002
rosa_roxburghii	Rroxscaffold_6G00413280 Rroxscaffold_7G00164870
rosa_rugosa	Rorug06G0320400 Rorug06G0320500
rosa_samantha	Rh6AG434800 Rh6BG468300 Rh6CG446800 Rh6DG433600 Rh6DG433700
rosa_wichuraiana	Rw6G037650

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	762
AclWI	GGATC	1 cut(s)	743
AcoI	YGGCCR	1 cut(s)	725
AcsI	RAATTY	1 cut(s)	488
AdeI	CACNNNGTG	1 cut(s)	470
AfaI	GTAC	1 cut(s)	709
AfiI	CCNNNNNNNGG	2 cut(s)	547, 752
AflIII	ACRYGT	1 cut(s)	530
AgsI	TTSAA	4 cut(s)	56, 587, 671, 679
AjnI	CCWGG	1 cut(s)	751
AluBI	AGCT	2 cut(s)	61, 683
AluI	AGCT	2 cut(s)	61, 683
Alw26I	GTCTC	3 cut(s)	470, 570, 635
AlwI	GGATC	1 cut(s)	743
AlwNI	CAGNNNCTG	1 cut(s)	568
AoxI	GGCC	3 cut(s)	11, 208, 725
ApaI	GGGCCC	1 cut(s)	212
ApoI	RAATTY	1 cut(s)	488
Asp700I	GAANNNNTTC	1 cut(s)	456
AspLEI	GCGC	1 cut(s)	176
AspS9I	GGNCC	3 cut(s)	208, 209, 514
AsuHPI	GGTGA	1 cut(s)	632
AsuNHI	GCTAGC	1 cut(s)	683
AvaII	GGWCC	1 cut(s)	514
BaeGI	GKGCMC	1 cut(s)	212
BalI	TGGCCA	1 cut(s)	727
BanII	GRGCYC	1 cut(s)	212
BbsI	GAAGAC	1 cut(s)	543
BccI	CCATC	1 cut(s)	299
BciT130I	CCWGG	1 cut(s)	753
BcoDI	GTCTC	3 cut(s)	470, 570, 635
BfaI	CTAG	2 cut(s)	468, 684
BglII	AGATCT	1 cut(s)	436
Bme1390I	CCNGG	1 cut(s)	753
Bme18I	GGWCC	1 cut(s)	514
BmgT120I	GGNCC	3 cut(s)	208, 209, 514
BmiI	GGNNCC	2 cut(s)	209, 210
BmrFI	CCNGG	1 cut(s)	753
BmsI	GCATC	3 cut(s)	184, 318, 364
BmtI	GCTAGC	1 cut(s)	687
BpiI	GAAGAC	1 cut(s)	543
BpmI	CTGGAG	2 cut(s)	47, 257
BpuEI	CTTGAG	1 cut(s)	198
Bsc4I	CCNNNNNNNGG	2 cut(s)	547, 752
Bse1I	ACTGG	4 cut(s)	51, 240, 562, 743
Bse3DI	GCAATG	2 cut(s)	356, 694
BseBI	CCWGG	1 cut(s)	753
BseGI	GGATG	3 cut(s)	163, 199, 309
BseLI	CCNNNNNNNGG	2 cut(s)	547, 752
BseMI	GCAATG	2 cut(s)	356, 694
BseNI	ACTGG	4 cut(s)	51, 240, 562, 743
BseSI	GKGCMC	1 cut(s)	212
BsgI	GTGCAG	3 cut(s)	388, 492, 542
BshFI	GGCC	3 cut(s)	13, 210, 727
BslFI	GGGAC	1 cut(s)	685
BslI	CCNNNNNNNGG	2 cut(s)	547, 752
BsmAI	GTCTC	3 cut(s)	470, 570, 635
BsmBI	CGTCTC	1 cut(s)	635
BsmFI	GGGAC	1 cut(s)	685
BsmI	GAATGC	1 cut(s)	342
BsnI	GGCC	3 cut(s)	13, 210, 727
Bsp120I	GGGCCC	1 cut(s)	208
Bsp1286I	GDGCHC	1 cut(s)	212
Bsp1407I	TGTACA	1 cut(s)	707
Bsp143I	GATC	2 cut(s)	436, 748
BspACI	CCGC	1 cut(s)	762
BspANI	GGCC	3 cut(s)	13, 210, 727
BspLI	GGNNCC	2 cut(s)	209, 210
BspOI	GCTAGC	1 cut(s)	687
BspPI	GGATC	1 cut(s)	743
BsrDI	GCAATG	2 cut(s)	356, 694
BsrGI	TGTACA	1 cut(s)	707
BsrI	ACTGG	4 cut(s)	51, 240, 562, 743
BssMI	GATC	2 cut(s)	436, 748
Bst2UI	CCWGG	1 cut(s)	753
Bst4CI	ACNGT	1 cut(s)	778
Bst6I	CTCTTC	1 cut(s)	131
BstAPI	GCANNNNNTGC	1 cut(s)	470
BstAUI	TGTACA	1 cut(s)	707
BstC8I	GCNNGC	1 cut(s)	685
BstEII	GGTNACC	1 cut(s)	741
BstF5I	GGATG	3 cut(s)	163, 199, 309
BstHHI	GCGC	1 cut(s)	176
BstKTI	GATC	2 cut(s)	439, 751
BstMAI	GTCTC	3 cut(s)	470, 570, 635
BstMBI	GATC	2 cut(s)	436, 748
BstMWI	GCNNNNNNNGC	4 cut(s)	58, 398, 470, 506
BstNI	CCWGG	1 cut(s)	753
BstNSI	RCATGY	2 cut(s)	392, 534
BstPI	GGTNACC	1 cut(s)	741
BstSCI	CCNGG	1 cut(s)	751
BstSLI	GKGCMC	1 cut(s)	212
BstV2I	GAAGAC	1 cut(s)	543
BstX2I	RGATCY	1 cut(s)	436
BstYI	RGATCY	1 cut(s)	436
BsuRI	GGCC	3 cut(s)	13, 210, 727
BtsCI	GGATG	3 cut(s)	163, 199, 309
BtsI	GCAGTG	1 cut(s)	376
BtsIMutI	CAGTG	2 cut(s)	376, 736
Cac8I	GCNNGC	1 cut(s)	685
CaiI	CAGNNNCTG	1 cut(s)	568
CfoI	GCGC	1 cut(s)	176
Cfr13I	GGNCC	3 cut(s)	208, 209, 514
Csp6I	GTAC	1 cut(s)	708
CviAII	CATG	4 cut(s)	263, 389, 461, 531
CviJI	RGCY	9 cut(s)	13, 61, 86, 210, 500, 634, 683, 727, 756
CviKI_1	RGCY	9 cut(s)	13, 61, 86, 210, 500, 634, 683, 727, 756
CviQI	GTAC	1 cut(s)	708
DpnI	GATC	2 cut(s)	438, 750
DpnII	GATC	2 cut(s)	436, 748
DraIII	CACNNNGTG	1 cut(s)	470
EaeI	YGGCCR	1 cut(s)	725
Eam1104I	CTCTTC	1 cut(s)	131
EarI	CTCTTC	1 cut(s)	131
Eco24I	GRGCYC	1 cut(s)	212
Eco47I	GGWCC	1 cut(s)	514
Eco91I	GGTNACC	1 cut(s)	741
EcoO109I	RGGNCCY	2 cut(s)	208, 209
EcoO65I	GGTNACC	1 cut(s)	741
EcoRII	CCWGG	1 cut(s)	751
EcoT38I	GRGCYC	1 cut(s)	212
Esp3I	CGTCTC	1 cut(s)	635
FaeI	CATG	4 cut(s)	266, 392, 464, 534
FaqI	GGGAC	1 cut(s)	685
FatI	CATG	4 cut(s)	262, 388, 460, 530
FauNDI	CATATG	1 cut(s)	543
FokI	GGATG	3 cut(s)	170, 206, 296
FriOI	GRGCYC	1 cut(s)	212
FspBI	CTAG	2 cut(s)	468, 684
GlaI	GCGC	1 cut(s)	175
GsuI	CTGGAG	2 cut(s)	47, 257
HaeIII	GGCC	3 cut(s)	13, 210, 727
HhaI	GCGC	1 cut(s)	176
Hin1II	CATG	4 cut(s)	266, 392, 464, 534
Hin6I	GCGC	1 cut(s)	174
HinP1I	GCGC	1 cut(s)	174
HincII	GTYRAC	1 cut(s)	528
HindII	GTYRAC	1 cut(s)	528
HinfI	GANTC	3 cut(s)	224, 380, 675
HphI	GGTGA	1 cut(s)	632
Hpy166II	GTNNAC	2 cut(s)	528, 554
Hpy188I	TCNGA	7 cut(s)	283, 304, 424, 514, 570, 600, 717
Hpy188III	TCNNGA	1 cut(s)	64
Hpy8I	GTNNAC	2 cut(s)	528, 554
Hpy99I	CGWCG	1 cut(s)	614
HpyAV	CCTTC	3 cut(s)	24, 106, 121
HpyCH4III	ACNGT	1 cut(s)	778
HpyCH4IV	ACGT	2 cut(s)	661, 719
HpyCH4V	TGCA	5 cut(s)	197, 369, 464, 473, 559
HpyF10VI	GCNNNNNNNGC	4 cut(s)	58, 398, 470, 506
HpySE526I	ACGT	2 cut(s)	661, 719
Hsp92II	CATG	4 cut(s)	266, 392, 464, 534
HspAI	GCGC	1 cut(s)	174
Kzo9I	GATC	2 cut(s)	436, 748
LmnI	GCTCC	1 cut(s)	66
LweI	GCATC	3 cut(s)	184, 318, 364
MaeI	CTAG	2 cut(s)	468, 684
MaeII	ACGT	2 cut(s)	661, 719
MaeIII	GTNAC	2 cut(s)	245, 741
MalI	GATC	2 cut(s)	438, 750
MboI	GATC	2 cut(s)	436, 748
MboII	GAAGA	9 cut(s)	13, 91, 112, 121, 130, 148, 233, 269, 548
MflI	RGATCY	1 cut(s)	436
MhlI	GDGCHC	1 cut(s)	212
MlsI	TGGCCA	1 cut(s)	727
MluCI	AATT	5 cut(s)	71, 266, 453, 488, 577
MluNI	TGGCCA	1 cut(s)	727
MlyI	GAGTC	1 cut(s)	389
MnlI	CCTC	9 cut(s)	148, 222, 321, 394, 403, 487, 541, 600, 685
Mox20I	TGGCCA	1 cut(s)	727
MroXI	GAANNNNTTC	1 cut(s)	456
MscI	TGGCCA	1 cut(s)	727
MseI	TTAA	1 cut(s)	351
Msp20I	TGGCCA	1 cut(s)	727
MspR9I	CCNGG	1 cut(s)	753
Mva1269I	GAATGC	1 cut(s)	342
MvaI	CCWGG	1 cut(s)	753
MwoI	GCNNNNNNNGC	4 cut(s)	58, 398, 470, 506
NdeI	CATATG	1 cut(s)	543
NdeII	GATC	2 cut(s)	436, 748
NheI	GCTAGC	1 cut(s)	683
NlaIII	CATG	4 cut(s)	266, 392, 464, 534
NlaIV	GGNNCC	2 cut(s)	209, 210
NmeAIII	GCCGAG	2 cut(s)	403, 427
NmuCI	GTSAC	1 cut(s)	245
NspI	RCATGY	2 cut(s)	392, 534
PciI	ACATGT	1 cut(s)	530
PctI	GAATGC	1 cut(s)	342
PdmI	GAANNNNTTC	1 cut(s)	456
PfeI	GAWTC	2 cut(s)	224, 675
PleI	GAGTC	1 cut(s)	388
PpsI	GAGTC	1 cut(s)	388
PscI	ACATGT	1 cut(s)	530
Psp6I	CCWGG	1 cut(s)	751
PspEI	GGTNACC	1 cut(s)	741
PspGI	CCWGG	1 cut(s)	751
PspN4I	GGNNCC	2 cut(s)	209, 210
PspOMI	GGGCCC	1 cut(s)	208
PspPI	GGNCC	3 cut(s)	208, 209, 514
PsrI	GAACNNNNNNTAC	2 cut(s)	252, 284
PstNI	CAGNNNCTG	1 cut(s)	568
PsuI	RGATCY	1 cut(s)	436
RsaI	GTAC	1 cut(s)	709
RsaNI	GTAC	1 cut(s)	708
SaqAI	TTAA	1 cut(s)	351
Sau3AI	GATC	2 cut(s)	436, 748
Sau96I	GGNCC	3 cut(s)	208, 209, 514
SchI	GAGTC	1 cut(s)	389
ScrFI	CCNGG	1 cut(s)	753
SduI	GDGCHC	1 cut(s)	212
SfaNI	GCATC	3 cut(s)	184, 318, 364
SinI	GGWCC	1 cut(s)	514
SmlI	CTYRAG	1 cut(s)	213
SmoI	CTYRAG	1 cut(s)	213
Sse9I	AATT	5 cut(s)	71, 266, 453, 488, 577
SsiI	CCGC	1 cut(s)	762
SspMI	CTAG	2 cut(s)	468, 684
StyD4I	CCNGG	1 cut(s)	751
TaaI	ACNGT	1 cut(s)	778
TaiI	ACGT	2 cut(s)	664, 722
TasI	AATT	5 cut(s)	71, 266, 453, 488, 577
TatI	WGTACW	1 cut(s)	707
TfiI	GAWTC	2 cut(s)	224, 675
Tru1I	TTAA	1 cut(s)	351
Tru9I	TTAA	1 cut(s)	351
TscAI	CASTG	2 cut(s)	376, 743
TseFI	GTSAC	1 cut(s)	245
Tsp45I	GTSAC	1 cut(s)	245
TspDTI	ATGAA	2 cut(s)	279, 449
TspRI	CASTG	2 cut(s)	376, 743
VpaK11BI	GGWCC	1 cut(s)	514
XapI	RAATTY	1 cut(s)	488
XceI	RCATGY	2 cut(s)	392, 534
XcmI	CCANNNNNNNNNTGG	2 cut(s)	569, 735
XmnI	GAANNNNTTC	1 cut(s)	456
XspI	CTAG	2 cut(s)	468, 684

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.