Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0005680

Physical Location & Seq

Genomic Coordinates Forward (+)

6776327 .. 6778583

Gene Structure 2257 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00164870.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 816 bp

ATGTCTCGGTGCTGGCCTTACACGCCTTCCGTGAAGGCAGTGAATAGAGAGGCCTTGCTCGAACCGATTAAGCTCCAGAGAGAATTGGAGAAGAAAGCCAAGACACATAGGAAGAAAGAGAAGAAGGAGAAGAAAGATAAGGGGGAGAAGAGAAAATGGCATAAAGAGGATGAGTTATCTACTTGCGCTGTAATTTGGGGAGTGGATGCAATAGCAAGGGGCCCTCAAGTAGTAGAATCAAATCAACTGGAGAAAAGTGACATTACCGAAGAACATGAATTACCAACCTTGTCTGATAACATTTGCTACTTGTCTGATGGCATCCAAAGTGGCACAAAGAGGAAAAGAACCATCATTCGCATTAAATCATTGCCCAAGTGCAGTGATGCAGAGTCCTCACATGCCTCTTATGCCGAGCATACTTCTGGGAAGTCGGATTTCCAAACAGATCTAAAGATGACAGAAATTGATCATGCACCTAGTGCAGAGACAAATGTAGAATTTGAGGAAGCCACTTGTACTTCGGACCAAAAGGTGTCAACATGTGAAGACCATACGGAGGGTTTGCTGCACCAGTCTCTGATTGGTAATTGGGTTCAACCTCTACTTCAGACAGCACCCGACGATTGTGGTGATGAAGATTGGCTTTTTGAGACAAAGCAGGAAAATAAACGTGGTTTTGAAAGATTCAAAGCTAGCAATGAGGTGGTGTCCCGTTGTACAATGTCCCGTTGTACAAGTCAGACGTTGTGGCCACAAGCACACTGGTTGCCTGAGCCTGGCTTATCCGCACTACCCTTTACTGTTCCATTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

271

Amino Acids

30.83

Weight (kDa)

5.91

Isoelectric Point (pI)

51.94

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005680)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G20100 AT1G20100 AT1G75860 AT1G75860 AT1G76230
fragaria_vesca	FvH4_2g38160 FvH4_2g38160 FvH4_6g14711
prunus_persica	Prupe.1G362500_v2.0.a1 Prupe.1G362800_v2.0.a1 Prupe.1G362800_v2.0.a1 Prupe.1G362800_v2.0.a1
pyrus_communis	pycom15g00820
rosa_chinensis	RchiOBHm_Chr6g0303321
rosa_laevigata	RLG00000011092 RLG00000024466
rosa_multiflora	Rmu_sc0007252.1_g000006 Rmu_sc0027227.1_g000002
rosa_roxburghii	Rroxscaffold_6G00413280 Rroxscaffold_7G00164870
rosa_rugosa	Rorug06G0320400 Rorug06G0320500
rosa_samantha	Rh6AG434800 Rh6BG468300 Rh6CG446800 Rh6DG433600 Rh6DG433700
rosa_wichuraiana	Rw6G037650

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	789
AcoI	YGGCCR	1 cut(s)	752
AcsI	RAATTY	1 cut(s)	500
AcuI	CTGAAG	1 cut(s)	593
AdeI	CACNNNGTG	1 cut(s)	482
AfaI	GTAC	3 cut(s)	520, 721, 736
AfiI	CCNNNNNNNGG	2 cut(s)	559, 779
AflIII	ACRYGT	1 cut(s)	542
AgsI	TTSAA	3 cut(s)	599, 683, 691
AjnI	CCWGG	1 cut(s)	778
AluBI	AGCT	2 cut(s)	73, 695
AluI	AGCT	2 cut(s)	73, 695
Alw26I	GTCTC	4 cut(s)	9, 482, 582, 647
AlwNI	CAGNNNCTG	1 cut(s)	580
AoxI	GGCC	4 cut(s)	14, 51, 220, 752
ApaI	GGGCCC	1 cut(s)	224
ApeKI	GCWGC	1 cut(s)	568
ApoI	RAATTY	1 cut(s)	500
AspLEI	GCGC	1 cut(s)	188
AspS9I	GGNCC	3 cut(s)	220, 221, 526
AsuHPI	GGTGA	1 cut(s)	644
AsuNHI	GCTAGC	1 cut(s)	695
AvaII	GGWCC	1 cut(s)	526
BaeGI	GKGCMC	1 cut(s)	224
BalI	TGGCCA	1 cut(s)	754
BanII	GRGCYC	1 cut(s)	224
BbsI	GAAGAC	1 cut(s)	555
BbvI	GCAGC	1 cut(s)	555
BccI	CCATC	2 cut(s)	311, 359
BciT130I	CCWGG	1 cut(s)	780
BclI	TGATCA	1 cut(s)	469
BcoDI	GTCTC	4 cut(s)	9, 482, 582, 647
BfaI	CTAG	2 cut(s)	480, 696
BglII	AGATCT	1 cut(s)	448
BisI	GCNGC	1 cut(s)	569
BlsI	GCNGC	1 cut(s)	570
Bme1390I	CCNGG	1 cut(s)	780
Bme18I	GGWCC	1 cut(s)	526
BmgT120I	GGNCC	3 cut(s)	220, 221, 526
BmiI	GGNNCC	2 cut(s)	221, 222
BmrFI	CCNGG	1 cut(s)	780
BmsI	GCATC	3 cut(s)	196, 330, 376
BmtI	GCTAGC	1 cut(s)	699
BpiI	GAAGAC	1 cut(s)	555
BpmI	CTGGAG	2 cut(s)	59, 269
Bpu10I	CCTNAGC	1 cut(s)	774
BpuEI	CTTGAG	1 cut(s)	210
Bsc4I	CCNNNNNNNGG	2 cut(s)	559, 779
Bse1I	ACTGG	3 cut(s)	252, 574, 770
Bse3DI	GCAATG	2 cut(s)	368, 706
BseBI	CCWGG	1 cut(s)	780
BseGI	GGATG	3 cut(s)	175, 211, 321
BseLI	CCNNNNNNNGG	2 cut(s)	559, 779
BseMI	GCAATG	2 cut(s)	368, 706
BseMII	CTCAG	1 cut(s)	765
BseNI	ACTGG	3 cut(s)	252, 574, 770
BseSI	GKGCMC	1 cut(s)	224
BseXI	GCAGC	1 cut(s)	555
BsgI	GTGCAG	3 cut(s)	400, 504, 554
BshFI	GGCC	4 cut(s)	16, 53, 222, 754
BslFI	GGGAC	2 cut(s)	697, 712
BslI	CCNNNNNNNGG	2 cut(s)	559, 779
BsmAI	GTCTC	4 cut(s)	9, 482, 582, 647
BsmFI	GGGAC	2 cut(s)	697, 712
BsnI	GGCC	4 cut(s)	16, 53, 222, 754
Bsp120I	GGGCCC	1 cut(s)	220
Bsp1286I	GDGCHC	1 cut(s)	224
Bsp1407I	TGTACA	2 cut(s)	719, 734
Bsp143I	GATC	2 cut(s)	448, 469
BspACI	CCGC	1 cut(s)	789
BspANI	GGCC	4 cut(s)	16, 53, 222, 754
BspCNI	CTCAG	1 cut(s)	766
BspLI	GGNNCC	2 cut(s)	221, 222
BspOI	GCTAGC	1 cut(s)	699
BsrDI	GCAATG	2 cut(s)	368, 706
BsrGI	TGTACA	2 cut(s)	719, 734
BsrI	ACTGG	3 cut(s)	252, 574, 770
BssMI	GATC	2 cut(s)	448, 469
Bst2UI	CCWGG	1 cut(s)	780
Bst4CI	ACNGT	1 cut(s)	805
Bst6I	CTCTTC	1 cut(s)	143
BstAPI	GCANNNNNTGC	1 cut(s)	482
BstAUI	TGTACA	2 cut(s)	719, 734
BstC8I	GCNNGC	2 cut(s)	14, 697
BstDEI	CTNAG	1 cut(s)	774
BstF5I	GGATG	3 cut(s)	175, 211, 321
BstHHI	GCGC	1 cut(s)	188
BstKTI	GATC	2 cut(s)	451, 472
BstMAI	GTCTC	4 cut(s)	9, 482, 582, 647
BstMBI	GATC	2 cut(s)	448, 469
BstMWI	GCNNNNNNNGC	3 cut(s)	22, 410, 482
BstNI	CCWGG	1 cut(s)	780
BstNSI	RCATGY	2 cut(s)	404, 546
BstSCI	CCNGG	1 cut(s)	778
BstSLI	GKGCMC	1 cut(s)	224
BstV1I	GCAGC	1 cut(s)	555
BstV2I	GAAGAC	1 cut(s)	555
BstX2I	RGATCY	1 cut(s)	448
BstYI	RGATCY	1 cut(s)	448
BsuRI	GGCC	4 cut(s)	16, 53, 222, 754
BtsCI	GGATG	3 cut(s)	175, 211, 321
BtsI	GCAGTG	2 cut(s)	45, 388
BtsIMutI	CAGTG	3 cut(s)	45, 388, 763
Cac8I	GCNNGC	2 cut(s)	14, 697
CaiI	CAGNNNCTG	1 cut(s)	580
CfoI	GCGC	1 cut(s)	188
Cfr13I	GGNCC	3 cut(s)	220, 221, 526
Csp6I	GTAC	3 cut(s)	519, 720, 735
CviAII	CATG	4 cut(s)	275, 401, 473, 543
CviQI	GTAC	3 cut(s)	519, 720, 735
DdeI	CTNAG	1 cut(s)	774
DpnI	GATC	2 cut(s)	450, 471
DpnII	GATC	2 cut(s)	448, 469
DraIII	CACNNNGTG	1 cut(s)	482
EaeI	YGGCCR	1 cut(s)	752
Eam1104I	CTCTTC	1 cut(s)	143
EarI	CTCTTC	1 cut(s)	143
Eco147I	AGGCCT	1 cut(s)	53
Eco24I	GRGCYC	1 cut(s)	224
Eco47I	GGWCC	1 cut(s)	526
Eco57I	CTGAAG	1 cut(s)	593
EcoO109I	RGGNCCY	2 cut(s)	220, 221
EcoRII	CCWGG	1 cut(s)	778
EcoT38I	GRGCYC	1 cut(s)	224
FaeI	CATG	4 cut(s)	278, 404, 476, 546
FaiI	YATR	9 cut(s)	108, 162, 276, 402, 411, 420, 474, 544, 555
FalI	AAGNNNNNCTT	2 cut(s)	630, 662
FaqI	GGGAC	2 cut(s)	697, 712
FatI	CATG	4 cut(s)	274, 400, 472, 542
FbaI	TGATCA	1 cut(s)	469
Fnu4HI	GCNGC	1 cut(s)	569
FokI	GGATG	3 cut(s)	182, 218, 308
FriOI	GRGCYC	1 cut(s)	224
Fsp4HI	GCNGC	1 cut(s)	569
FspBI	CTAG	2 cut(s)	480, 696
GlaI	GCGC	1 cut(s)	187
GluI	GCNGC	1 cut(s)	569
GsuI	CTGGAG	2 cut(s)	59, 269
HaeIII	GGCC	4 cut(s)	16, 53, 222, 754
HhaI	GCGC	1 cut(s)	188
Hin1II	CATG	4 cut(s)	278, 404, 476, 546
Hin6I	GCGC	1 cut(s)	186
HinP1I	GCGC	1 cut(s)	186
HincII	GTYRAC	1 cut(s)	540
HindII	GTYRAC	1 cut(s)	540
HinfI	GANTC	3 cut(s)	236, 392, 687
HphI	GGTGA	1 cut(s)	644
Hpy166II	GTNNAC	1 cut(s)	540
Hpy188I	TCNGA	7 cut(s)	295, 316, 436, 526, 582, 612, 744
Hpy188III	TCNNGA	1 cut(s)	76
Hpy8I	GTNNAC	1 cut(s)	540
Hpy99I	CGWCG	1 cut(s)	626
HpyAV	CCTTC	3 cut(s)	28, 36, 118
HpyCH4III	ACNGT	1 cut(s)	805
HpyCH4IV	ACGT	2 cut(s)	673, 746
HpyCH4V	TGCA	6 cut(s)	209, 381, 389, 476, 485, 571
HpyF10VI	GCNNNNNNNGC	3 cut(s)	22, 410, 482
HpyF3I	CTNAG	1 cut(s)	774
HpySE526I	ACGT	2 cut(s)	673, 746
Hsp92II	CATG	4 cut(s)	278, 404, 476, 546
HspAI	GCGC	1 cut(s)	186
Ksp22I	TGATCA	1 cut(s)	469
Kzo9I	GATC	2 cut(s)	448, 469
LmnI	GCTCC	1 cut(s)	78
LpnPI	CCDG	9 cut(s)	89, 233, 411, 587, 647, 751, 765, 786, 792
Lsp1109I	GCAGC	1 cut(s)	555
LweI	GCATC	3 cut(s)	196, 330, 376
MaeI	CTAG	2 cut(s)	480, 696
MaeII	ACGT	2 cut(s)	673, 746
MaeIII	GTNAC	1 cut(s)	257
MalI	GATC	2 cut(s)	450, 471
MboI	GATC	2 cut(s)	448, 469
MboII	GAAGA	8 cut(s)	103, 124, 133, 142, 160, 281, 560, 650
MflI	RGATCY	1 cut(s)	448
MhlI	GDGCHC	1 cut(s)	224
MlsI	TGGCCA	1 cut(s)	754
MluCI	AATT	6 cut(s)	83, 192, 278, 465, 500, 589
MluNI	TGGCCA	1 cut(s)	754
MlyI	GAGTC	1 cut(s)	401
MmeI	TCCRAC	1 cut(s)	414
Mox20I	TGGCCA	1 cut(s)	754
MscI	TGGCCA	1 cut(s)	754
MseI	TTAA	2 cut(s)	69, 363
Msp20I	TGGCCA	1 cut(s)	754
MspR9I	CCNGG	1 cut(s)	780
MvaI	CCWGG	1 cut(s)	780
MwoI	GCNNNNNNNGC	3 cut(s)	22, 410, 482
NdeII	GATC	2 cut(s)	448, 469
NheI	GCTAGC	1 cut(s)	695
NlaIII	CATG	4 cut(s)	278, 404, 476, 546
NlaIV	GGNNCC	2 cut(s)	221, 222
NmeAIII	GCCGAG	1 cut(s)	439
NmuCI	GTSAC	1 cut(s)	257
NspI	RCATGY	2 cut(s)	404, 546
PceI	AGGCCT	1 cut(s)	53
PciI	ACATGT	1 cut(s)	542
PfeI	GAWTC	2 cut(s)	236, 687
PkrI	GCNGC	1 cut(s)	570
PleI	GAGTC	1 cut(s)	400
PpsI	GAGTC	1 cut(s)	400
PscI	ACATGT	1 cut(s)	542
Psp6I	CCWGG	1 cut(s)	778
PspGI	CCWGG	1 cut(s)	778
PspN4I	GGNNCC	2 cut(s)	221, 222
PspOMI	GGGCCC	1 cut(s)	220
PspPI	GGNCC	3 cut(s)	220, 221, 526
PsrI	GAACNNNNNNTAC	2 cut(s)	264, 296
PstNI	CAGNNNCTG	1 cut(s)	580
PsuI	RGATCY	1 cut(s)	448
RsaI	GTAC	3 cut(s)	520, 721, 736
RsaNI	GTAC	3 cut(s)	519, 720, 735
SaqAI	TTAA	2 cut(s)	69, 363
SatI	GCNGC	1 cut(s)	569
Sau3AI	GATC	2 cut(s)	448, 469
Sau96I	GGNCC	3 cut(s)	220, 221, 526
SchI	GAGTC	1 cut(s)	401
ScrFI	CCNGG	1 cut(s)	780
SduI	GDGCHC	1 cut(s)	224
SetI	ASST	9 cut(s)	75, 290, 481, 537, 604, 676, 697, 708, 749
SfaNI	GCATC	3 cut(s)	196, 330, 376
SinI	GGWCC	1 cut(s)	526
SmlI	CTYRAG	1 cut(s)	225
SmoI	CTYRAG	1 cut(s)	225
Sse9I	AATT	6 cut(s)	83, 192, 278, 465, 500, 589
SseBI	AGGCCT	1 cut(s)	53
SsiI	CCGC	1 cut(s)	789
SspMI	CTAG	2 cut(s)	480, 696
StuI	AGGCCT	1 cut(s)	53
StyD4I	CCNGG	1 cut(s)	778
TaaI	ACNGT	1 cut(s)	805
TaiI	ACGT	2 cut(s)	676, 749
TaqI	TCGA	1 cut(s)	60
TasI	AATT	6 cut(s)	83, 192, 278, 465, 500, 589
TatI	WGTACW	3 cut(s)	518, 719, 734
TfiI	GAWTC	2 cut(s)	236, 687
Tru1I	TTAA	2 cut(s)	69, 363
Tru9I	TTAA	2 cut(s)	69, 363
TscAI	CASTG	3 cut(s)	45, 388, 770
TseFI	GTSAC	1 cut(s)	257
TseI	GCWGC	1 cut(s)	568
Tsp45I	GTSAC	1 cut(s)	257
TspDTI	ATGAA	2 cut(s)	291, 651
TspGWI	ACGGA	2 cut(s)	19, 572
TspRI	CASTG	3 cut(s)	45, 388, 770
VpaK11BI	GGWCC	1 cut(s)	526
XapI	RAATTY	1 cut(s)	500
XceI	RCATGY	2 cut(s)	404, 546
XcmI	CCANNNNNNNNNTGG	2 cut(s)	581, 762
XspI	CTAG	2 cut(s)	480, 696

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.