Rh6DG433700

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6D
OG0005680
Physical Location & Seq
Reverse (-)
61243858 .. 61245511
1654 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6DG433700.1

Sequence Viewer

Length: 435 bp
ATGTCTCGGTGCTTGCCTTACACGCCTTCCGTGAAGGCAGTGAATAGAGAGGCCTTGCTCGAACCGATTAAGCTCCAGAGAGAATTGGAGAAGAAAGCCAAGACACATAGGAAGAAGGAGAAGAAGGAGAAGAAAGAGAAGGGGGAGAAGAGAAAATGGCATAAAGAGGATGAGTTATCTACTTGCGCTGTTATTTGGGGAGTGGATGCAATAGCAAGGGGCCCTCAAGTAGTAGAATCAAATCAACTGGAGAAAAGTGACATTACCGAAGAACATGAATTACCAACCTTGTCTGATAACATTTGCTACTTGTCTGATGGCATCCAGAGTGGCACAAAGAGGAAAAGAACCATCATTCGCATTAAATCATTGCCCAAGCGCATGCCTCTTGTGCCGAGCATACTTCTGGGAAGTCAGATTTCCAAACAGATCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

144

Amino Acids

16.51

Weight (kDa)

9.68

Isoelectric Point (pI)

51.94

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AluBI AGCT 1 cut(s) 73
AluI AGCT 1 cut(s) 73
Alw26I GTCTC 1 cut(s) 9
AoxI GGCC 2 cut(s) 51, 220
ApaI GGGCCC 1 cut(s) 224
AspLEI GCGC 2 cut(s) 188, 381
AspS9I GGNCC 2 cut(s) 220, 221
BaeGI GKGCMC 1 cut(s) 224
BanII GRGCYC 1 cut(s) 224
BccI CCATC 2 cut(s) 311, 359
BcoDI GTCTC 1 cut(s) 9
BglII AGATCT 1 cut(s) 429
BmgT120I GGNCC 2 cut(s) 220, 221
BmiI GGNNCC 2 cut(s) 221, 222
BmsI GCATC 2 cut(s) 196, 330
BpmI CTGGAG 2 cut(s) 59, 269
BpuEI CTTGAG 1 cut(s) 210
Bse1I ACTGG 1 cut(s) 252
Bse3DI GCAATG 1 cut(s) 368
BseGI GGATG 3 cut(s) 175, 211, 321
BseMI GCAATG 1 cut(s) 368
BseNI ACTGG 1 cut(s) 252
BseSI GKGCMC 1 cut(s) 224
BshFI GGCC 2 cut(s) 53, 222
BsmAI GTCTC 1 cut(s) 9
BsnI GGCC 2 cut(s) 53, 222
Bsp120I GGGCCC 1 cut(s) 220
Bsp1286I GDGCHC 1 cut(s) 224
Bsp143I GATC 1 cut(s) 429
BspANI GGCC 2 cut(s) 53, 222
BspLI GGNNCC 2 cut(s) 221, 222
BsrDI GCAATG 1 cut(s) 368
BsrI ACTGG 1 cut(s) 252
BssMI GATC 1 cut(s) 429
Bst6I CTCTTC 1 cut(s) 143
BstC8I GCNNGC 2 cut(s) 14, 383
BstF5I GGATG 3 cut(s) 175, 211, 321
BstHHI GCGC 2 cut(s) 188, 381
BstKTI GATC 1 cut(s) 432
BstMAI GTCTC 1 cut(s) 9
BstMBI GATC 1 cut(s) 429
BstMWI GCNNNNNNNGC 2 cut(s) 22, 391
BstNSI RCATGY 1 cut(s) 385
BstSLI GKGCMC 1 cut(s) 224
BstX2I RGATCY 1 cut(s) 429
BstYI RGATCY 1 cut(s) 429
BsuRI GGCC 2 cut(s) 53, 222
BtsCI GGATG 3 cut(s) 175, 211, 321
BtsI GCAGTG 1 cut(s) 45
BtsIMutI CAGTG 1 cut(s) 45
Cac8I GCNNGC 2 cut(s) 14, 383
CfoI GCGC 2 cut(s) 188, 381
Cfr13I GGNCC 2 cut(s) 220, 221
CviAII CATG 2 cut(s) 275, 382
CviJI RGCY 4 cut(s) 53, 73, 98, 222
CviKI_1 RGCY 4 cut(s) 53, 73, 98, 222
DpnI GATC 1 cut(s) 431
DpnII GATC 1 cut(s) 429
Eam1104I CTCTTC 1 cut(s) 143
EarI CTCTTC 1 cut(s) 143
Eco147I AGGCCT 1 cut(s) 53
Eco24I GRGCYC 1 cut(s) 224
EcoO109I RGGNCCY 2 cut(s) 220, 221
EcoT38I GRGCYC 1 cut(s) 224
FaeI CATG 2 cut(s) 278, 385
FaiI YATR 5 cut(s) 108, 162, 276, 383, 401
FatI CATG 2 cut(s) 274, 381
FokI GGATG 3 cut(s) 182, 218, 308
FriOI GRGCYC 1 cut(s) 224
GlaI GCGC 2 cut(s) 187, 380
GsuI CTGGAG 2 cut(s) 59, 269
HaeIII GGCC 2 cut(s) 53, 222
HhaI GCGC 2 cut(s) 188, 381
Hin1II CATG 2 cut(s) 278, 385
Hin6I GCGC 2 cut(s) 186, 379
HinP1I GCGC 2 cut(s) 186, 379
HinfI GANTC 1 cut(s) 236
Hpy188I TCNGA 3 cut(s) 295, 316, 417
Hpy188III TCNNGA 2 cut(s) 76, 325
HpyAV CCTTC 5 cut(s) 28, 36, 109, 118, 133
HpyCH4V TGCA 1 cut(s) 209
HpyF10VI GCNNNNNNNGC 2 cut(s) 22, 391
Hsp92II CATG 2 cut(s) 278, 385
HspAI GCGC 2 cut(s) 186, 379
Kzo9I GATC 1 cut(s) 429
LmnI GCTCC 1 cut(s) 78
LpnPI CCDG 4 cut(s) 89, 233, 338, 392
LweI GCATC 2 cut(s) 196, 330
MaeIII GTNAC 1 cut(s) 257
MalI GATC 1 cut(s) 431
MboI GATC 1 cut(s) 429
MboII GAAGA 6 cut(s) 103, 124, 133, 142, 160, 281
MflI RGATCY 1 cut(s) 429
MhlI GDGCHC 1 cut(s) 224
MluCI AATT 2 cut(s) 83, 278
MnlI CCTC 5 cut(s) 43, 160, 234, 333, 396
MseI TTAA 2 cut(s) 69, 363
MwoI GCNNNNNNNGC 2 cut(s) 22, 391
NdeII GATC 1 cut(s) 429
NlaIII CATG 2 cut(s) 278, 385
NlaIV GGNNCC 2 cut(s) 221, 222
NmeAIII GCCGAG 1 cut(s) 420
NmuCI GTSAC 1 cut(s) 257
NspI RCATGY 1 cut(s) 385
PaeI GCATGC 1 cut(s) 385
PceI AGGCCT 1 cut(s) 53
PfeI GAWTC 1 cut(s) 236
PspN4I GGNNCC 2 cut(s) 221, 222
PspOMI GGGCCC 1 cut(s) 220
PspPI GGNCC 2 cut(s) 220, 221
PsrI GAACNNNNNNTAC 2 cut(s) 264, 296
PsuI RGATCY 1 cut(s) 429
SaqAI TTAA 2 cut(s) 69, 363
Sau3AI GATC 1 cut(s) 429
Sau96I GGNCC 2 cut(s) 220, 221
SduI GDGCHC 1 cut(s) 224
SetI ASST 2 cut(s) 75, 290
SfaNI GCATC 2 cut(s) 196, 330
SmlI CTYRAG 1 cut(s) 225
SmoI CTYRAG 1 cut(s) 225
SphI GCATGC 1 cut(s) 385
Sse9I AATT 2 cut(s) 83, 278
SseBI AGGCCT 1 cut(s) 53
StuI AGGCCT 1 cut(s) 53
TaqI TCGA 1 cut(s) 60
TasI AATT 2 cut(s) 83, 278
TfiI GAWTC 1 cut(s) 236
Tru1I TTAA 2 cut(s) 69, 363
Tru9I TTAA 2 cut(s) 69, 363
TscAI CASTG 1 cut(s) 45
TseFI GTSAC 1 cut(s) 257
Tsp45I GTSAC 1 cut(s) 257
TspDTI ATGAA 1 cut(s) 291
TspGWI ACGGA 1 cut(s) 19
TspRI CASTG 1 cut(s) 45
XceI RCATGY 1 cut(s) 385
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.