Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0005680

Physical Location & Seq

Genomic Coordinates Forward (+)

33358913 .. 33361995

Gene Structure 3083 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G362800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 960 bp

ATGGCTCGGGCCTTGAAGTACACCTTTAGCGATTATGCGAGGAACGCAGTGAGTAGAGAGGCCTTGCTCGAACCGACTAAGCTCCAGAGAGAGATGGAGAAAAATGGCAAGAGTCAGAGGAAGAAAGAGAGAAGGGAGATAAGGGGACAAGGGCGTAAAGAGAAGGATGAGTCCATACCTGGTTATGTTACTCTTCACAACGTGAAAAGCCTTGATGACAAAAAGTGTTTCCAGCAAAAGAAGGGTAAAAAAGGGGAAGCAAAGGGATGGTGTCCGCAAAAAATTGAACATGAAGTTGATCAACTGGAGAGAAGTGACATTACGAACGAACATGGGCTGCCAACCTGTATTGAGAACAATTCCTACTTGTCTGATGGAACCCAAAGCAGCAAGAAAAGCAAGAACAATTCCTACTTGTCTGATGGAACCCAAAGCAGCAAGAAAAGCAAGCCTTTGATCGTGCGCATTAAATTGCTTAAGCACAGCGAACCAAATGCCTCACTTGCCTGCTCTCCTTCTGGAAGGGTAGATTTGCTTCCTCCAGAGAGAACGGAAGTTGTTCTTGCACCCAGTCAACCCAGTGCAGAGACAAATGTAGAACTCAGGCAGGTCTCTTCAAAACCTGACCAAGATTTACCCTGTTCAACATCAAAGGGGGTCGAAACTATTGGTCAGAAAAGAAGTGCGAGTGCTGCATTTGAAGATCAGATTCAGAGTGAAGATTCACTCTATGCAAGTCTGATTGAGAATTGGATCCCTCCACCGATTCAGTTTGCCGATGTTGGTGATGGTGATGAAGAATGGCTCTTTGGGACGAAGCATCAAAACAGATGTGGGTCCAAAAGATTTAAAGCTGCTAACAATGAGGTCTCCAGTTGTACAAGGAGCACGCTGTGGCCACAAGCACAGTGGTTGTTGGAGGCTGGTGTATATGCATTACCCTTCACGGTTCCATTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

320

Amino Acids

35.73

Weight (kDa)

8.81

Isoelectric Point (pI)

49.99

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005680)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G20100 AT1G20100 AT1G75860 AT1G75860 AT1G76230
fragaria_vesca	FvH4_2g38160 FvH4_2g38160 FvH4_6g14711
prunus_persica	Prupe.1G362500_v2.0.a1 Prupe.1G362800_v2.0.a1 Prupe.1G362800_v2.0.a1 Prupe.1G362800_v2.0.a1
pyrus_communis	pycom15g00820
rosa_chinensis	RchiOBHm_Chr6g0303321
rosa_laevigata	RLG00000011092 RLG00000024466
rosa_multiflora	Rmu_sc0007252.1_g000006 Rmu_sc0027227.1_g000002
rosa_roxburghii	Rroxscaffold_6G00413280 Rroxscaffold_7G00164870
rosa_rugosa	Rorug06G0320400 Rorug06G0320500
rosa_samantha	Rh6AG434800 Rh6BG468300 Rh6CG446800 Rh6DG433600 Rh6DG433700
rosa_wichuraiana	Rw6G037650

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	464
Acc36I	ACCTGC	1 cut(s)	598
AciI	CCGC	1 cut(s)	275
AclWI	GGATC	2 cut(s)	748, 761
AcoI	YGGCCR	1 cut(s)	896
AdeI	CACNNNGTG	2 cut(s)	202, 894
AfaI	GTAC	2 cut(s)	20, 880
AflII	CTTAAG	1 cut(s)	476
AgsI	TTSAA	5 cut(s)	16, 287, 618, 645, 701
AjnI	CCWGG	1 cut(s)	178
AjuI	GAANNNNNNNTTGG	2 cut(s)	792, 824
AluBI	AGCT	2 cut(s)	82, 854
AluI	AGCT	2 cut(s)	82, 854
Alw21I	GWGCWC	1 cut(s)	890
Alw26I	GTCTC	3 cut(s)	581, 616, 874
AlwI	GGATC	2 cut(s)	748, 761
Ama87I	CYCGRG	1 cut(s)	6
AoxI	GGCC	3 cut(s)	9, 60, 896
ApeKI	GCWGC	5 cut(s)	337, 387, 435, 692, 854
Asp700I	GAANNNNTTC	1 cut(s)	558
AspLEI	GCGC	1 cut(s)	465
AspS9I	GGNCC	2 cut(s)	9, 837
AsuHPI	GGTGA	2 cut(s)	797, 803
AvaI	CYCGRG	1 cut(s)	6
AvaII	GGWCC	1 cut(s)	837
BalI	TGGCCA	1 cut(s)	898
BamHI	GGATCC	1 cut(s)	753
BarI	GAAGNNNNNNTAC	4 cut(s)	304, 336, 519, 551
Bbv12I	GWGCWC	1 cut(s)	890
BbvI	GCAGC	5 cut(s)	324, 399, 447, 679, 841
BccI	CCATC	5 cut(s)	88, 261, 368, 416, 782
BcgI	CGANNNNNNTGC	2 cut(s)	476, 510
BciT130I	CCWGG	1 cut(s)	180
BclI	TGATCA	1 cut(s)	298
BcoDI	GTCTC	3 cut(s)	581, 616, 874
BfaI	CTAG	1 cut(s)	958
BfrI	CTTAAG	1 cut(s)	476
BfuAI	ACCTGC	1 cut(s)	598
BisI	GCNGC	5 cut(s)	338, 388, 436, 693, 855
BlsI	GCNGC	5 cut(s)	339, 389, 437, 694, 856
Bme1390I	CCNGG	1 cut(s)	180
Bme18I	GGWCC	1 cut(s)	837
BmeT110I	CYCGRG	1 cut(s)	6
BmgT120I	GGNCC	2 cut(s)	9, 837
BmiI	GGNNCC	5 cut(s)	379, 427, 755, 838, 951
BmrFI	CCNGG	1 cut(s)	180
BmrI	ACTGGG	2 cut(s)	564, 573
BmsI	GCATC	1 cut(s)	829
BmuI	ACTGGG	2 cut(s)	564, 573
BpmI	CTGGAG	4 cut(s)	68, 326, 525, 856
BsaI	GGTCTC	2 cut(s)	616, 874
Bse1I	ACTGG	4 cut(s)	309, 570, 579, 873
BseBI	CCWGG	1 cut(s)	180
BseGI	GGATG	2 cut(s)	172, 272
BseMII	CTCAG	1 cut(s)	616
BseNI	ACTGG	4 cut(s)	309, 570, 579, 873
BseXI	GCAGC	5 cut(s)	324, 399, 447, 679, 841
BsgI	GTGCAG	1 cut(s)	603
BshFI	GGCC	3 cut(s)	11, 62, 898
BsiHKAI	GWGCWC	1 cut(s)	890
BsiHKCI	CYCGRG	1 cut(s)	6
BslFI	GGGAC	2 cut(s)	159, 826
BsmAI	GTCTC	3 cut(s)	581, 616, 874
BsmFI	GGGAC	2 cut(s)	159, 826
BsnI	GGCC	3 cut(s)	11, 62, 898
Bso31I	GGTCTC	2 cut(s)	616, 874
BsoBI	CYCGRG	1 cut(s)	6
Bsp1286I	GDGCHC	1 cut(s)	890
Bsp1407I	TGTACA	1 cut(s)	878
Bsp143I	GATC	4 cut(s)	298, 456, 703, 753
BspACI	CCGC	1 cut(s)	275
BspANI	GGCC	3 cut(s)	11, 62, 898
BspCNI	CTCAG	1 cut(s)	615
BspLI	GGNNCC	5 cut(s)	379, 427, 755, 838, 951
BspMI	ACCTGC	1 cut(s)	598
BspPI	GGATC	2 cut(s)	748, 761
BspTI	CTTAAG	1 cut(s)	476
BspTNI	GGTCTC	2 cut(s)	616, 874
BsrGI	TGTACA	1 cut(s)	878
BsrI	ACTGG	4 cut(s)	309, 570, 579, 873
BssMI	GATC	4 cut(s)	298, 456, 703, 753
Bst2UI	CCWGG	1 cut(s)	180
Bst4CI	ACNGT	2 cut(s)	909, 949
Bst6I	CTCTTC	2 cut(s)	198, 619
BstAFI	CTTAAG	1 cut(s)	476
BstAUI	TGTACA	1 cut(s)	878
BstC8I	GCNNGC	3 cut(s)	449, 508, 890
BstDEI	CTNAG	2 cut(s)	78, 602
BstF5I	GGATG	2 cut(s)	172, 272
BstHHI	GCGC	1 cut(s)	465
BstKTI	GATC	4 cut(s)	301, 459, 706, 756
BstMAI	GTCTC	3 cut(s)	581, 616, 874
BstMBI	GATC	4 cut(s)	298, 456, 703, 753
BstMWI	GCNNNNNNNGC	5 cut(s)	44, 396, 444, 503, 692
BstNI	CCWGG	1 cut(s)	180
BstSCI	CCNGG	1 cut(s)	178
BstV1I	GCAGC	5 cut(s)	324, 399, 447, 679, 841
BstX2I	RGATCY	1 cut(s)	753
BstYI	RGATCY	1 cut(s)	753
BsuRI	GGCC	3 cut(s)	11, 62, 898
BtsCI	GGATG	2 cut(s)	172, 272
BtsI	GCAGTG	1 cut(s)	54
BtsIMutI	CAGTG	3 cut(s)	54, 586, 914
BveI	ACCTGC	1 cut(s)	598
Cac8I	GCNNGC	3 cut(s)	449, 508, 890
CfoI	GCGC	1 cut(s)	465
Cfr13I	GGNCC	2 cut(s)	9, 837
CsiI	ACCWGGT	1 cut(s)	178
Csp6I	GTAC	2 cut(s)	19, 879
CspCI	CAANNNNNGTGG	2 cut(s)	890, 925
CviAII	CATG	2 cut(s)	290, 332
CviQI	GTAC	2 cut(s)	19, 879
DdeI	CTNAG	2 cut(s)	78, 602
DpnI	GATC	4 cut(s)	300, 458, 705, 755
DpnII	GATC	4 cut(s)	298, 456, 703, 753
DraI	TTTAAA	1 cut(s)	850
DraIII	CACNNNGTG	2 cut(s)	202, 894
EaeI	YGGCCR	1 cut(s)	896
Eam1104I	CTCTTC	2 cut(s)	198, 619
EarI	CTCTTC	2 cut(s)	198, 619
Eco147I	AGGCCT	1 cut(s)	62
Eco31I	GGTCTC	2 cut(s)	616, 874
Eco47I	GGWCC	1 cut(s)	837
Eco88I	CYCGRG	1 cut(s)	6
EcoRII	CCWGG	1 cut(s)	178
EcoT22I	ATGCAT	1 cut(s)	937
FaeI	CATG	2 cut(s)	293, 335
FaiI	YATR	8 cut(s)	36, 176, 186, 291, 333, 732, 931, 933
FalI	AAGNNNNNCTT	6 cut(s)	8, 40, 436, 468, 546, 578
FaqI	GGGAC	2 cut(s)	159, 826
FatI	CATG	2 cut(s)	289, 331
FbaI	TGATCA	1 cut(s)	298
Fnu4HI	GCNGC	5 cut(s)	338, 388, 436, 693, 855
FokI	GGATG	2 cut(s)	179, 279
Fsp4HI	GCNGC	5 cut(s)	338, 388, 436, 693, 855
FspAI	RTGCGCAY	1 cut(s)	464
FspBI	CTAG	1 cut(s)	958
FspI	TGCGCA	1 cut(s)	464
GlaI	GCGC	1 cut(s)	464
GluI	GCNGC	5 cut(s)	338, 388, 436, 693, 855
GsuI	CTGGAG	4 cut(s)	68, 326, 525, 856
HaeIII	GGCC	3 cut(s)	11, 62, 898
HhaI	GCGC	1 cut(s)	465
Hin1II	CATG	2 cut(s)	293, 335
Hin6I	GCGC	1 cut(s)	463
HinP1I	GCGC	1 cut(s)	463
HincII	GTYRAC	1 cut(s)	575
HindII	GTYRAC	1 cut(s)	575
HinfI	GANTC	5 cut(s)	112, 170, 709, 722, 766
HphI	GGTGA	2 cut(s)	797, 803
Hpy166II	GTNNAC	2 cut(s)	21, 575
Hpy188I	TCNGA	7 cut(s)	117, 373, 421, 675, 708, 714, 741
Hpy188III	TCNNGA	3 cut(s)	85, 519, 542
Hpy8I	GTNNAC	2 cut(s)	21, 575
HpyAV	CCTTC	6 cut(s)	126, 157, 235, 516, 525, 952
HpyCH4III	ACNGT	2 cut(s)	909, 949
HpyCH4IV	ACGT	1 cut(s)	201
HpyCH4V	TGCA	5 cut(s)	566, 584, 695, 734, 935
HpyF10VI	GCNNNNNNNGC	5 cut(s)	44, 396, 444, 503, 692
HpyF3I	CTNAG	2 cut(s)	78, 602
HpySE526I	ACGT	1 cut(s)	201
Hsp92II	CATG	2 cut(s)	293, 335
HspAI	GCGC	1 cut(s)	463
Ksp22I	TGATCA	1 cut(s)	298
Kzo9I	GATC	4 cut(s)	298, 456, 703, 753
LmnI	GCTCC	2 cut(s)	87, 885
Lsp1109I	GCAGC	5 cut(s)	324, 399, 447, 679, 841
LweI	GCATC	1 cut(s)	829
MabI	ACCWGGT	1 cut(s)	178
MaeI	CTAG	1 cut(s)	958
MaeII	ACGT	1 cut(s)	201
MaeIII	GTNAC	2 cut(s)	187, 314
MalI	GATC	4 cut(s)	300, 458, 705, 755
MboI	GATC	4 cut(s)	298, 456, 703, 753
MboII	GAAGA	6 cut(s)	133, 185, 606, 713, 731, 809
MflI	RGATCY	1 cut(s)	753
MhlI	GDGCHC	1 cut(s)	890
MlsI	TGGCCA	1 cut(s)	898
MluCI	AATT	5 cut(s)	282, 358, 406, 470, 748
MluNI	TGGCCA	1 cut(s)	898
MlyI	GAGTC	2 cut(s)	121, 179
MmeI	TCCRAC	1 cut(s)	897
MnlI	CCTC	8 cut(s)	33, 52, 111, 508, 549, 768, 859, 913
Mox20I	TGGCCA	1 cut(s)	898
Mph1103I	ATGCAT	1 cut(s)	937
MroXI	GAANNNNTTC	1 cut(s)	558
MscI	TGGCCA	1 cut(s)	898
MseI	TTAA	3 cut(s)	468, 477, 849
Msp20I	TGGCCA	1 cut(s)	898
MspCI	CTTAAG	1 cut(s)	476
MspR9I	CCNGG	1 cut(s)	180
MvaI	CCWGG	1 cut(s)	180
MwoI	GCNNNNNNNGC	5 cut(s)	44, 396, 444, 503, 692
NdeII	GATC	4 cut(s)	298, 456, 703, 753
NlaIII	CATG	2 cut(s)	293, 335
NlaIV	GGNNCC	5 cut(s)	379, 427, 755, 838, 951
NmuCI	GTSAC	1 cut(s)	314
NsbI	TGCGCA	1 cut(s)	464
NsiI	ATGCAT	1 cut(s)	937
PceI	AGGCCT	1 cut(s)	62
PdmI	GAANNNNTTC	1 cut(s)	558
PfeI	GAWTC	3 cut(s)	709, 722, 766
PkrI	GCNGC	5 cut(s)	339, 389, 437, 694, 856
PleI	GAGTC	2 cut(s)	120, 178
PpsI	GAGTC	2 cut(s)	120, 178
Psp6I	CCWGG	1 cut(s)	178
PspGI	CCWGG	1 cut(s)	178
PspN4I	GGNNCC	5 cut(s)	379, 427, 755, 838, 951
PspPI	GGNCC	2 cut(s)	9, 837
PsrI	GAACNNNNNNTAC	4 cut(s)	347, 379, 395, 427
PsuI	RGATCY	1 cut(s)	753
RsaI	GTAC	2 cut(s)	20, 880
RsaNI	GTAC	2 cut(s)	19, 879
SaqAI	TTAA	3 cut(s)	468, 477, 849
SatI	GCNGC	5 cut(s)	338, 388, 436, 693, 855
Sau3AI	GATC	4 cut(s)	298, 456, 703, 753
Sau96I	GGNCC	2 cut(s)	9, 837
SchI	GAGTC	2 cut(s)	121, 179
ScrFI	CCNGG	1 cut(s)	180
SduI	GDGCHC	1 cut(s)	890
SetI	ASST	9 cut(s)	26, 84, 181, 204, 347, 612, 625, 856, 870
SexAI	ACCWGGT	1 cut(s)	178
SfaNI	GCATC	1 cut(s)	829
SinI	GGWCC	1 cut(s)	837
SmlI	CTYRAG	1 cut(s)	476
SmoI	CTYRAG	1 cut(s)	476
Sse9I	AATT	5 cut(s)	282, 358, 406, 470, 748
SseBI	AGGCCT	1 cut(s)	62
SsiI	CCGC	1 cut(s)	275
SspMI	CTAG	1 cut(s)	958
StuI	AGGCCT	1 cut(s)	62
StyD4I	CCNGG	1 cut(s)	178
TaaI	ACNGT	2 cut(s)	909, 949
TaiI	ACGT	1 cut(s)	204
TaqI	TCGA	2 cut(s)	69, 660
TasI	AATT	5 cut(s)	282, 358, 406, 470, 748
TatI	WGTACW	2 cut(s)	18, 878
TfiI	GAWTC	3 cut(s)	709, 722, 766
Tru1I	TTAA	3 cut(s)	468, 477, 849
Tru9I	TTAA	3 cut(s)	468, 477, 849
TscAI	CASTG	3 cut(s)	54, 586, 914
TseFI	GTSAC	1 cut(s)	314
TseI	GCWGC	5 cut(s)	337, 387, 435, 692, 854
Tsp45I	GTSAC	1 cut(s)	314
TspDTI	ATGAA	2 cut(s)	306, 810
TspGWI	ACGGA	1 cut(s)	566
TspRI	CASTG	3 cut(s)	54, 586, 914
Vha464I	CTTAAG	1 cut(s)	476
VpaK11BI	GGWCC	1 cut(s)	837
XcmI	CCANNNNNNNNNTGG	1 cut(s)	906
XmnI	GAANNNNTTC	1 cut(s)	558
XspI	CTAG	1 cut(s)	958
Zsp2I	ATGCAT	1 cut(s)	937

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.