Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr3

Orthogroup ID

OG0005680

Physical Location & Seq

Genomic Coordinates Forward (+)

6737012 .. 6739096

Gene Structure 2085 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000011092

Sequence Viewer

CDS Protein Promoter (2k)

Length: 870 bp

ATGTCTCGGTGCTTGCCTTACACGCCTTCCGTGAAGGCAGTGAATAGAGGGGCCTTGCTCGAACCGATTAAGCTCCAGAGAGAATTGGAGAAGAAAGCCAAGACACATAGGAAGACAGAGAAGAGAGATAAGAAAGAGAAGGGGGGGAAGAGAAAATGGCATAAAGAGGATGAGTTATCTACTTGCGCTGTTATTTGGGGAGTGGATGCAATAGCAAGGGGCCCTCAAGTAGTAGAATCAAATCAACTGGAGAAAAGTGACATTACCGAAGAACATGAATTTCCAACCTTGTCTGAAAACATTTGCTATTTGTCTGACGGCATCCAAAGTGGCACAAAGAGGAAAAGAACCATCATTCACATTAAATCATTGCCCAAGCGCGGTGATGCAGAGTCCTCACATGCCTCTTGTGCGGAGCATACTTATGGGAAGTCAGATTTCCAGACAGATCTAAAGATGACAGAAATTGTTCATGCACCTAGTGCAGAGACAAATGTAGAATTTGAGGAAGCCACTTGTACTTCGGACCAAAAGGTGTCAACATGTGAAGACCATACGGAGGGTTTACTGCACCAGTCTCTGATTGGTAATTGGGTTCAACCTCTACTGCAGACGGCACCCAACGATTGCAGTGATGAAGAATGGCTTTTTGAGACGAAGCAGGAAAATAAACGTGGTTTTGAAAGATTCAACGATTGTGGTGATGAACATTGGCTTTTTGAGACGAAGCAGGAAAATAAACGTGGTTTTGAAAGATTCAAAGCTAGCAATGAGGTGGTGTCCCGTTGTACAAGTCAGACGCTGTGGCCACAAGCACTCTGGTTGCCTGAGCCTGGCTTATCCGCACTACCCTTTACTGTTCCATTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

290

Amino Acids

32.97

Weight (kDa)

5.98

Isoelectric Point (pI)

55.92

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005680)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G20100 AT1G20100 AT1G75860 AT1G75860 AT1G76230
fragaria_vesca	FvH4_2g38160 FvH4_2g38160 FvH4_6g14711
prunus_persica	Prupe.1G362500_v2.0.a1 Prupe.1G362800_v2.0.a1 Prupe.1G362800_v2.0.a1 Prupe.1G362800_v2.0.a1
pyrus_communis	pycom15g00820
rosa_chinensis	RchiOBHm_Chr6g0303321
rosa_laevigata	RLG00000011092 RLG00000024466
rosa_multiflora	Rmu_sc0007252.1_g000006 Rmu_sc0027227.1_g000002
rosa_roxburghii	Rroxscaffold_6G00413280 Rroxscaffold_7G00164870
rosa_rugosa	Rorug06G0320400 Rorug06G0320500
rosa_samantha	Rh6AG434800 Rh6BG468300 Rh6CG446800 Rh6DG433600 Rh6DG433700
rosa_wichuraiana	Rw6G037650

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	616
AccII	CGCG	1 cut(s)	381
AciI	CCGC	3 cut(s)	381, 413, 843
AcoI	YGGCCR	1 cut(s)	806
AcsI	RAATTY	2 cut(s)	278, 500
AdeI	CACNNNGTG	1 cut(s)	482
AfaI	GTAC	2 cut(s)	520, 790
AfiI	CCNNNNNNNGG	3 cut(s)	380, 559, 833
AflIII	ACRYGT	1 cut(s)	542
AgsI	TTSAA	5 cut(s)	599, 683, 691, 752, 760
AjnI	CCWGG	1 cut(s)	832
AluBI	AGCT	2 cut(s)	73, 764
AluI	AGCT	2 cut(s)	73, 764
Alw26I	GTCTC	5 cut(s)	9, 482, 582, 647, 716
AlwNI	CAGNNNCTG	2 cut(s)	580, 802
AoxI	GGCC	3 cut(s)	51, 220, 806
ApaI	GGGCCC	1 cut(s)	224
ApoI	RAATTY	2 cut(s)	278, 500
Asp700I	GAANNNNTTC	1 cut(s)	468
AspLEI	GCGC	2 cut(s)	188, 381
AspS9I	GGNCC	4 cut(s)	51, 220, 221, 526
AsuHPI	GGTGA	2 cut(s)	395, 713
AsuNHI	GCTAGC	1 cut(s)	764
AvaII	GGWCC	1 cut(s)	526
BaeGI	GKGCMC	1 cut(s)	224
BalI	TGGCCA	1 cut(s)	808
BanI	GGYRCC	1 cut(s)	616
BanII	GRGCYC	1 cut(s)	224
BbsI	GAAGAC	2 cut(s)	119, 555
BccI	CCATC	1 cut(s)	359
BceAI	ACGGC	2 cut(s)	334, 630
BciT130I	CCWGG	1 cut(s)	834
BcoDI	GTCTC	5 cut(s)	9, 482, 582, 647, 716
BfaI	CTAG	2 cut(s)	480, 765
BfmI	CTRYAG	1 cut(s)	608
BglII	AGATCT	1 cut(s)	448
Bme1390I	CCNGG	1 cut(s)	834
Bme18I	GGWCC	1 cut(s)	526
BmgT120I	GGNCC	4 cut(s)	51, 220, 221, 526
BmiI	GGNNCC	4 cut(s)	52, 221, 222, 618
BmrFI	CCNGG	1 cut(s)	834
BmsI	GCATC	3 cut(s)	196, 330, 376
BmtI	GCTAGC	1 cut(s)	768
BpiI	GAAGAC	2 cut(s)	119, 555
BpmI	CTGGAG	2 cut(s)	59, 269
Bpu10I	CCTNAGC	1 cut(s)	828
BpuEI	CTTGAG	1 cut(s)	210
Bsc4I	CCNNNNNNNGG	3 cut(s)	380, 559, 833
Bse1I	ACTGG	2 cut(s)	252, 574
Bse3DI	GCAATG	2 cut(s)	368, 775
BseBI	CCWGG	1 cut(s)	834
BseGI	GGATG	3 cut(s)	175, 211, 321
BseLI	CCNNNNNNNGG	3 cut(s)	380, 559, 833
BseMI	GCAATG	2 cut(s)	368, 775
BseMII	CTCAG	1 cut(s)	819
BseNI	ACTGG	2 cut(s)	252, 574
BseSI	GKGCMC	1 cut(s)	224
BsgI	GTGCAG	2 cut(s)	504, 554
Bsh1236I	CGCG	1 cut(s)	381
BshFI	GGCC	3 cut(s)	53, 222, 808
BshNI	GGYRCC	1 cut(s)	616
BslFI	GGGAC	1 cut(s)	766
BslI	CCNNNNNNNGG	3 cut(s)	380, 559, 833
BsmAI	GTCTC	5 cut(s)	9, 482, 582, 647, 716
BsmBI	CGTCTC	2 cut(s)	647, 716
BsmFI	GGGAC	1 cut(s)	766
BsnI	GGCC	3 cut(s)	53, 222, 808
Bsp120I	GGGCCC	1 cut(s)	220
Bsp1286I	GDGCHC	1 cut(s)	224
Bsp1407I	TGTACA	1 cut(s)	788
Bsp143I	GATC	1 cut(s)	448
BspACI	CCGC	3 cut(s)	381, 413, 843
BspANI	GGCC	3 cut(s)	53, 222, 808
BspCNI	CTCAG	1 cut(s)	820
BspFNI	CGCG	1 cut(s)	381
BspLI	GGNNCC	4 cut(s)	52, 221, 222, 618
BspMAI	CTGCAG	1 cut(s)	612
BspOI	GCTAGC	1 cut(s)	768
BspT107I	GGYRCC	1 cut(s)	616
BsrDI	GCAATG	2 cut(s)	368, 775
BsrGI	TGTACA	1 cut(s)	788
BsrI	ACTGG	2 cut(s)	252, 574
BssMI	GATC	1 cut(s)	448
Bst2UI	CCWGG	1 cut(s)	834
Bst4CI	ACNGT	1 cut(s)	859
Bst6I	CTCTTC	2 cut(s)	116, 143
BstAPI	GCANNNNNTGC	1 cut(s)	482
BstAUI	TGTACA	1 cut(s)	788
BstC8I	GCNNGC	2 cut(s)	14, 766
BstDEI	CTNAG	1 cut(s)	828
BstF5I	GGATG	3 cut(s)	175, 211, 321
BstFNI	CGCG	1 cut(s)	381
BstHHI	GCGC	2 cut(s)	188, 381
BstKTI	GATC	1 cut(s)	451
BstMAI	GTCTC	5 cut(s)	9, 482, 582, 647, 716
BstMBI	GATC	1 cut(s)	448
BstMWI	GCNNNNNNNGC	3 cut(s)	22, 410, 482
BstNI	CCWGG	1 cut(s)	834
BstNSI	RCATGY	2 cut(s)	404, 546
BstSCI	CCNGG	1 cut(s)	832
BstSFI	CTRYAG	1 cut(s)	608
BstSLI	GKGCMC	1 cut(s)	224
BstUI	CGCG	1 cut(s)	381
BstV2I	GAAGAC	2 cut(s)	119, 555
BstX2I	RGATCY	1 cut(s)	448
BstYI	RGATCY	1 cut(s)	448
BsuRI	GGCC	3 cut(s)	53, 222, 808
BtsCI	GGATG	3 cut(s)	175, 211, 321
BtsI	GCAGTG	2 cut(s)	45, 637
BtsIMutI	CAGTG	2 cut(s)	45, 637
Cac8I	GCNNGC	2 cut(s)	14, 766
CaiI	CAGNNNCTG	2 cut(s)	580, 802
CfoI	GCGC	2 cut(s)	188, 381
Cfr13I	GGNCC	4 cut(s)	51, 220, 221, 526
CseI	GACGC	1 cut(s)	808
Csp6I	GTAC	2 cut(s)	519, 789
CspCI	CAANNNNNGTGG	2 cut(s)	679, 714
CviAII	CATG	4 cut(s)	275, 401, 473, 543
CviQI	GTAC	2 cut(s)	519, 789
DdeI	CTNAG	1 cut(s)	828
DpnI	GATC	1 cut(s)	450
DpnII	GATC	1 cut(s)	448
DraIII	CACNNNGTG	1 cut(s)	482
EaeI	YGGCCR	1 cut(s)	806
Eam1104I	CTCTTC	2 cut(s)	116, 143
EarI	CTCTTC	2 cut(s)	116, 143
Eco24I	GRGCYC	1 cut(s)	224
Eco47I	GGWCC	1 cut(s)	526
EcoO109I	RGGNCCY	3 cut(s)	51, 220, 221
EcoRII	CCWGG	1 cut(s)	832
EcoT38I	GRGCYC	1 cut(s)	224
Esp3I	CGTCTC	2 cut(s)	647, 716
FaeI	CATG	4 cut(s)	278, 404, 476, 546
FaiI	YATR	9 cut(s)	108, 162, 276, 402, 420, 426, 474, 544, 555
FalI	AAGNNNNNCTT	2 cut(s)	630, 662
FaqI	GGGAC	1 cut(s)	766
FatI	CATG	4 cut(s)	274, 400, 472, 542
FokI	GGATG	3 cut(s)	182, 218, 308
FriOI	GRGCYC	1 cut(s)	224
FspBI	CTAG	2 cut(s)	480, 765
GlaI	GCGC	2 cut(s)	187, 380
GsuI	CTGGAG	2 cut(s)	59, 269
HaeIII	GGCC	3 cut(s)	53, 222, 808
HgaI	GACGC	1 cut(s)	808
HhaI	GCGC	2 cut(s)	188, 381
Hin1II	CATG	4 cut(s)	278, 404, 476, 546
Hin6I	GCGC	2 cut(s)	186, 379
HinP1I	GCGC	2 cut(s)	186, 379
HincII	GTYRAC	1 cut(s)	540
HindII	GTYRAC	1 cut(s)	540
HinfI	GANTC	4 cut(s)	236, 392, 687, 756
HphI	GGTGA	2 cut(s)	395, 713
Hpy166II	GTNNAC	2 cut(s)	540, 566
Hpy188I	TCNGA	6 cut(s)	295, 316, 436, 526, 582, 798
Hpy188III	TCNNGA	2 cut(s)	76, 442
Hpy8I	GTNNAC	2 cut(s)	540, 566
HpyAV	CCTTC	3 cut(s)	28, 36, 133
HpyCH4III	ACNGT	1 cut(s)	859
HpyCH4IV	ACGT	2 cut(s)	673, 742
HpyCH4V	TGCA	7 cut(s)	209, 389, 476, 485, 571, 610, 630
HpyF10VI	GCNNNNNNNGC	3 cut(s)	22, 410, 482
HpyF3I	CTNAG	1 cut(s)	828
HpySE526I	ACGT	2 cut(s)	673, 742
Hsp92II	CATG	4 cut(s)	278, 404, 476, 546
HspAI	GCGC	2 cut(s)	186, 379
Kzo9I	GATC	1 cut(s)	448
LmnI	GCTCC	2 cut(s)	78, 415
LweI	GCATC	3 cut(s)	196, 330, 376
MaeI	CTAG	2 cut(s)	480, 765
MaeII	ACGT	2 cut(s)	673, 742
MaeIII	GTNAC	1 cut(s)	257
MalI	GATC	1 cut(s)	450
MboI	GATC	1 cut(s)	448
MboII	GAAGA	7 cut(s)	103, 124, 133, 160, 281, 560, 650
MflI	RGATCY	1 cut(s)	448
MhlI	GDGCHC	1 cut(s)	224
MlsI	TGGCCA	1 cut(s)	808
MluCI	AATT	5 cut(s)	83, 278, 465, 500, 589
MluNI	TGGCCA	1 cut(s)	808
MlyI	GAGTC	1 cut(s)	401
MmeI	TCCRAC	1 cut(s)	308
Mox20I	TGGCCA	1 cut(s)	808
MroXI	GAANNNNTTC	1 cut(s)	468
MscI	TGGCCA	1 cut(s)	808
MseI	TTAA	2 cut(s)	69, 363
MslI	CAYNNNNRTG	1 cut(s)	423
Msp20I	TGGCCA	1 cut(s)	808
MspR9I	CCNGG	1 cut(s)	834
MvaI	CCWGG	1 cut(s)	834
MvnI	CGCG	1 cut(s)	381
MwoI	GCNNNNNNNGC	3 cut(s)	22, 410, 482
NdeII	GATC	1 cut(s)	448
NheI	GCTAGC	1 cut(s)	764
NlaIII	CATG	4 cut(s)	278, 404, 476, 546
NlaIV	GGNNCC	4 cut(s)	52, 221, 222, 618
NmuCI	GTSAC	1 cut(s)	257
NspI	RCATGY	2 cut(s)	404, 546
PciI	ACATGT	1 cut(s)	542
PdmI	GAANNNNTTC	1 cut(s)	468
PfeI	GAWTC	3 cut(s)	236, 687, 756
PleI	GAGTC	1 cut(s)	400
PpsI	GAGTC	1 cut(s)	400
PscI	ACATGT	1 cut(s)	542
Psp6I	CCWGG	1 cut(s)	832
PspGI	CCWGG	1 cut(s)	832
PspN4I	GGNNCC	4 cut(s)	52, 221, 222, 618
PspOMI	GGGCCC	1 cut(s)	220
PspPI	GGNCC	4 cut(s)	51, 220, 221, 526
PstI	CTGCAG	1 cut(s)	612
PstNI	CAGNNNCTG	2 cut(s)	580, 802
PsuI	RGATCY	1 cut(s)	448
RsaI	GTAC	2 cut(s)	520, 790
RsaNI	GTAC	2 cut(s)	519, 789
RseI	CAYNNNNRTG	1 cut(s)	423
SaqAI	TTAA	2 cut(s)	69, 363
Sau3AI	GATC	1 cut(s)	448
Sau96I	GGNCC	4 cut(s)	51, 220, 221, 526
SchI	GAGTC	1 cut(s)	401
ScrFI	CCNGG	1 cut(s)	834
SduI	GDGCHC	1 cut(s)	224
SetI	ASST	9 cut(s)	75, 290, 481, 537, 604, 676, 745, 766, 777
SfaNI	GCATC	3 cut(s)	196, 330, 376
SfcI	CTRYAG	1 cut(s)	608
SinI	GGWCC	1 cut(s)	526
SmiMI	CAYNNNNRTG	1 cut(s)	423
SmlI	CTYRAG	1 cut(s)	225
SmoI	CTYRAG	1 cut(s)	225
Sse9I	AATT	5 cut(s)	83, 278, 465, 500, 589
SsiI	CCGC	3 cut(s)	381, 413, 843
SspMI	CTAG	2 cut(s)	480, 765
StyD4I	CCNGG	1 cut(s)	832
TaaI	ACNGT	1 cut(s)	859
TaiI	ACGT	2 cut(s)	676, 745
TaqI	TCGA	1 cut(s)	60
TasI	AATT	5 cut(s)	83, 278, 465, 500, 589
TatI	WGTACW	2 cut(s)	518, 788
TfiI	GAWTC	3 cut(s)	236, 687, 756
Tru1I	TTAA	2 cut(s)	69, 363
Tru9I	TTAA	2 cut(s)	69, 363
TscAI	CASTG	2 cut(s)	45, 637
TseFI	GTSAC	1 cut(s)	257
Tsp45I	GTSAC	1 cut(s)	257
TspDTI	ATGAA	4 cut(s)	291, 461, 651, 720
TspGWI	ACGGA	2 cut(s)	19, 572
TspRI	CASTG	2 cut(s)	45, 637
VpaK11BI	GGWCC	1 cut(s)	526
XapI	RAATTY	2 cut(s)	278, 500
XceI	RCATGY	2 cut(s)	404, 546
XcmI	CCANNNNNNNNNTGG	2 cut(s)	581, 816
XmnI	GAANNNNTTC	1 cut(s)	468
XspI	CTAG	2 cut(s)	480, 765

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.