Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

OG0005680

Physical Location & Seq

Genomic Coordinates Forward (+)

444337 .. 446196

Gene Structure 1860 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom15g00820.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 849 bp

ATGGACTATTCGAGGAAGGCAGTTGGTAGGGGGGACTTGTTTGAACCGGTTAAGCCCCAGAGAAAGACGGAGAAGAAGGCCAAGAATCATAGGAACAAAGACAAGAGGGGGACAATGGGACAAGGCCATAAGGCGAAGGAGAATGTTGTACCCAATTATGTTACTGTACCCAGCTCGAAAAACCGTGTTAACAAGAAGTGCTTCCAGCAAGAGAAGGGAAAAGCGGAAGCAAATGGATGGTTTGTTAAAAATGGAGAAGATGAAGGTAATAAGCTGGAGAAAAGTGACATTACCGAAGAGCATGAGCTGCCAAGCTGTGCTGAAAACAATTGCTACTTGTCTGATGGCAACCAAGGTGGCAATAAGAGGAAAAGGCCTTTGATCATTCGCTTTAAATTGCGAAAGCCCAGTGAACCAGATGCCTCACTTGCGCCCTCTTCTTCTGGAATGACAGATTTCCTCCCTCCAGAAAGGTCAGAAGTTGTTCCTGCACCCAATCAACCTCGTAGTTCGGAGGCAACTGTTGGAGTTGCATCCAATTGTGACCAAGAGTTGTCTTGTCCAACAACAGAGGGGTTCAAAATGACCGGTGAAAAGAGAATTGGGAGAGAAGATTCAGAGTGTGCAAATGTGATGGAGAATTGGATTCCACCTCCGTTCCAATTTGCCCTCCATGATGCCGATGGCGAAGAATGGCTCTTTGGGACAGCGTCACAAAACAGATGCCGGTCTAAAAGATCTAAAGCTGATAGTGAGGTTTCATGTCGTACAAGCAGCACGCAGTGGCCGAAAGCACAATTGTTGCCTGAGGCCGGCATATATGCATTGTCCTACACGGTTCCGTTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

283

Amino Acids

31.44

Weight (kDa)

8.8

Isoelectric Point (pI)

59.4

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005680)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G20100 AT1G20100 AT1G75860 AT1G75860 AT1G76230
fragaria_vesca	FvH4_2g38160 FvH4_2g38160 FvH4_6g14711
prunus_persica	Prupe.1G362500_v2.0.a1 Prupe.1G362800_v2.0.a1 Prupe.1G362800_v2.0.a1 Prupe.1G362800_v2.0.a1
pyrus_communis	pycom15g00820
rosa_chinensis	RchiOBHm_Chr6g0303321
rosa_laevigata	RLG00000011092 RLG00000024466
rosa_multiflora	Rmu_sc0007252.1_g000006 Rmu_sc0027227.1_g000002
rosa_roxburghii	Rroxscaffold_6G00413280 Rroxscaffold_7G00164870
rosa_rugosa	Rorug06G0320400 Rorug06G0320500
rosa_samantha	Rh6AG434800 Rh6BG468300 Rh6CG446800 Rh6DG433600 Rh6DG433700
rosa_wichuraiana	Rw6G037650

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	224
AcoI	YGGCCR	1 cut(s)	785
AdeI	CACNNNGTG	1 cut(s)	783
AfaI	GTAC	3 cut(s)	150, 168, 769
AfiI	CCNNNNNNNGG	1 cut(s)	812
AgeI	ACCGGT	2 cut(s)	46, 587
AgsI	TTSAA	2 cut(s)	44, 580
AjuI	GAANNNNNNNTTGG	4 cut(s)	585, 617, 684, 716
AluBI	AGCT	5 cut(s)	174, 274, 307, 315, 746
AluI	AGCT	5 cut(s)	174, 274, 307, 315, 746
AoxI	GGCC	5 cut(s)	78, 124, 374, 785, 810
ApeKI	GCWGC	2 cut(s)	307, 774
AsiGI	ACCGGT	2 cut(s)	46, 587
Asp700I	GAANNNNTTC	2 cut(s)	200, 483
AspLEI	GCGC	1 cut(s)	433
AsuHPI	GGTGA	1 cut(s)	602
AxyI	CCTNAGG	1 cut(s)	807
BbvI	GCAGC	2 cut(s)	294, 786
BccI	CCATC	4 cut(s)	231, 338, 628, 677
BclI	TGATCA	1 cut(s)	381
BfaI	CTAG	1 cut(s)	847
BglII	AGATCT	1 cut(s)	737
BisI	GCNGC	2 cut(s)	308, 775
BlsI	GCNGC	2 cut(s)	309, 776
BmiI	GGNNCC	1 cut(s)	840
BmrI	ACTGGG	1 cut(s)	402
BmsI	GCATC	4 cut(s)	409, 542, 667, 713
BmuI	ACTGGG	1 cut(s)	402
BpmI	CTGGAG	2 cut(s)	296, 450
BsaJI	CCNNGG	1 cut(s)	352
BsaWI	WCCGGW	2 cut(s)	46, 587
Bsc4I	CCNNNNNNNGG	1 cut(s)	812
Bse118I	RCCGGY	4 cut(s)	46, 587, 726, 812
Bse1I	ACTGG	1 cut(s)	408
Bse21I	CCTNAGG	1 cut(s)	807
BseDI	CCNNGG	1 cut(s)	352
BseGI	GGATG	2 cut(s)	242, 533
BseLI	CCNNNNNNNGG	1 cut(s)	812
BseMII	CTCAG	1 cut(s)	798
BseNI	ACTGG	1 cut(s)	408
BseXI	GCAGC	2 cut(s)	294, 786
BseYI	CCCAGC	1 cut(s)	170
BsgI	GTGCAG	1 cut(s)	474
BshFI	GGCC	5 cut(s)	80, 126, 376, 787, 812
BshTI	ACCGGT	2 cut(s)	46, 587
BsiSI	CCGG	4 cut(s)	47, 588, 727, 813
BslFI	GGGAC	4 cut(s)	47, 124, 132, 718
BslI	CCNNNNNNNGG	1 cut(s)	812
BsmFI	GGGAC	4 cut(s)	47, 124, 132, 718
BsnI	GGCC	5 cut(s)	80, 126, 376, 787, 812
Bsp143I	GATC	2 cut(s)	381, 737
BspACI	CCGC	1 cut(s)	224
BspANI	GGCC	5 cut(s)	80, 126, 376, 787, 812
BspCNI	CTCAG	1 cut(s)	799
BspLI	GGNNCC	1 cut(s)	840
BspQI	GCTCTTC	1 cut(s)	291
BsrFI	RCCGGY	4 cut(s)	46, 587, 726, 812
BsrI	ACTGG	1 cut(s)	408
BssAI	RCCGGY	4 cut(s)	46, 587, 726, 812
BssECI	CCNNGG	1 cut(s)	352
BssMI	GATC	2 cut(s)	381, 737
BssT1I	CCWWGG	1 cut(s)	352
Bst4CI	ACNGT	4 cut(s)	166, 185, 523, 838
Bst6I	CTCTTC	2 cut(s)	291, 442
BstAPI	GCANNNNNTGC	1 cut(s)	307
BstC8I	GCNNGC	2 cut(s)	779, 814
BstDEI	CTNAG	1 cut(s)	807
BstF5I	GGATG	2 cut(s)	242, 533
BstHHI	GCGC	1 cut(s)	433
BstKTI	GATC	2 cut(s)	384, 740
BstMBI	GATC	2 cut(s)	381, 737
BstMWI	GCNNNNNNNGC	2 cut(s)	307, 428
BstV1I	GCAGC	2 cut(s)	294, 786
BstX2I	RGATCY	1 cut(s)	737
BstYI	RGATCY	1 cut(s)	737
Bsu36I	CCTNAGG	1 cut(s)	807
BsuRI	GGCC	5 cut(s)	80, 126, 376, 787, 812
BtsCI	GGATG	2 cut(s)	242, 533
BtsI	GCAGTG	1 cut(s)	788
BtsIMutI	CAGTG	2 cut(s)	415, 788
Cac8I	GCNNGC	2 cut(s)	779, 814
CfoI	GCGC	1 cut(s)	433
Cfr10I	RCCGGY	4 cut(s)	46, 587, 726, 812
CseI	GACGC	1 cut(s)	699
Csp6I	GTAC	3 cut(s)	149, 167, 768
CspAI	ACCGGT	2 cut(s)	46, 587
CspCI	CAANNNNNGTGG	2 cut(s)	337, 372
CviAII	CATG	3 cut(s)	302, 674, 762
CviQI	GTAC	3 cut(s)	149, 167, 768
DdeI	CTNAG	1 cut(s)	807
DpnI	GATC	2 cut(s)	383, 739
DpnII	GATC	2 cut(s)	381, 737
DraI	TTTAAA	1 cut(s)	394
DraIII	CACNNNGTG	1 cut(s)	783
EaeI	YGGCCR	1 cut(s)	785
Eam1104I	CTCTTC	2 cut(s)	291, 442
EarI	CTCTTC	2 cut(s)	291, 442
Eco130I	CCWWGG	1 cut(s)	352
Eco147I	AGGCCT	1 cut(s)	376
Eco81I	CCTNAGG	1 cut(s)	807
EcoT14I	CCWWGG	1 cut(s)	352
EcoT22I	ATGCAT	1 cut(s)	826
ErhI	CCWWGG	1 cut(s)	352
FaeI	CATG	3 cut(s)	305, 677, 765
FaiI	YATR	9 cut(s)	90, 129, 159, 303, 675, 763, 818, 820, 822
FalI	AAGNNNNNCTT	2 cut(s)	185, 217
FaqI	GGGAC	4 cut(s)	47, 124, 132, 718
FatI	CATG	3 cut(s)	301, 673, 761
FbaI	TGATCA	1 cut(s)	381
Fnu4HI	GCNGC	2 cut(s)	308, 775
FokI	GGATG	2 cut(s)	249, 520
Fsp4HI	GCNGC	2 cut(s)	308, 775
FspBI	CTAG	1 cut(s)	847
GlaI	GCGC	1 cut(s)	432
GluI	GCNGC	2 cut(s)	308, 775
GsaI	CCCAGC	1 cut(s)	174
GsuI	CTGGAG	2 cut(s)	296, 450
HaeIII	GGCC	5 cut(s)	80, 126, 376, 787, 812
HapII	CCGG	4 cut(s)	47, 588, 727, 813
HgaI	GACGC	1 cut(s)	699
HhaI	GCGC	1 cut(s)	433
Hin1II	CATG	3 cut(s)	305, 677, 765
Hin6I	GCGC	1 cut(s)	431
HinP1I	GCGC	1 cut(s)	431
HincII	GTYRAC	1 cut(s)	190
HindII	GTYRAC	1 cut(s)	190
HinfI	GANTC	3 cut(s)	85, 614, 646
HpaI	GTTAAC	1 cut(s)	190
HpaII	CCGG	4 cut(s)	47, 588, 727, 813
HphI	GGTGA	1 cut(s)	602
Hpy166II	GTNNAC	2 cut(s)	190, 413
Hpy188I	TCNGA	4 cut(s)	343, 478, 514, 619
Hpy188III	TCNNGA	2 cut(s)	444, 467
Hpy8I	GTNNAC	2 cut(s)	190, 413
HpyAV	CCTTC	5 cut(s)	10, 70, 130, 208, 257
HpyCH4III	ACNGT	4 cut(s)	166, 185, 523, 838
HpyCH4V	TGCA	4 cut(s)	491, 533, 626, 824
HpyF10VI	GCNNNNNNNGC	2 cut(s)	307, 428
HpyF3I	CTNAG	1 cut(s)	807
Hsp92II	CATG	3 cut(s)	305, 677, 765
HspAI	GCGC	1 cut(s)	431
KroI	GCCGGC	1 cut(s)	812
KroNI	GCCGGC	1 cut(s)	814
Ksp22I	TGATCA	1 cut(s)	381
KspAI	GTTAAC	1 cut(s)	190
Kzo9I	GATC	2 cut(s)	381, 737
LguI	GCTCTTC	1 cut(s)	291
Lsp1109I	GCAGC	2 cut(s)	294, 786
LweI	GCATC	4 cut(s)	409, 542, 667, 713
MaeI	CTAG	1 cut(s)	847
MaeIII	GTNAC	4 cut(s)	160, 284, 542, 711
MalI	GATC	2 cut(s)	383, 739
MboI	GATC	2 cut(s)	381, 737
MboII	GAAGA	7 cut(s)	85, 269, 308, 429, 432, 623, 701
MfeI	CAATTG	3 cut(s)	328, 538, 797
MflI	RGATCY	1 cut(s)	737
MluCI	AATT	8 cut(s)	154, 328, 395, 538, 600, 640, 662, 797
MmeI	TCCRAC	2 cut(s)	505, 587
Mph1103I	ATGCAT	1 cut(s)	826
MroNI	GCCGGC	1 cut(s)	812
MroXI	GAANNNNTTC	2 cut(s)	200, 483
MseI	TTAA	4 cut(s)	51, 189, 246, 393
MspI	CCGG	4 cut(s)	47, 588, 727, 813
MunI	CAATTG	3 cut(s)	328, 538, 797
MwoI	GCNNNNNNNGC	2 cut(s)	307, 428
NaeI	GCCGGC	1 cut(s)	814
NdeII	GATC	2 cut(s)	381, 737
NgoMIV	GCCGGC	1 cut(s)	812
NlaIII	CATG	3 cut(s)	305, 677, 765
NlaIV	GGNNCC	1 cut(s)	840
NmuCI	GTSAC	3 cut(s)	284, 542, 711
NsiI	ATGCAT	1 cut(s)	826
PceI	AGGCCT	1 cut(s)	376
PciSI	GCTCTTC	1 cut(s)	291
PcsI	WCGNNNNNNNCGW	1 cut(s)	785
PdiI	GCCGGC	1 cut(s)	814
PdmI	GAANNNNTTC	2 cut(s)	200, 483
PfeI	GAWTC	3 cut(s)	85, 614, 646
PflFI	GACNNNGTC	1 cut(s)	709
PinAI	ACCGGT	2 cut(s)	46, 587
PkrI	GCNGC	2 cut(s)	309, 776
PspFI	CCCAGC	1 cut(s)	170
PspN4I	GGNNCC	1 cut(s)	840
PsuI	RGATCY	1 cut(s)	737
PsyI	GACNNNGTC	1 cut(s)	709
RsaI	GTAC	3 cut(s)	150, 168, 769
RsaNI	GTAC	3 cut(s)	149, 167, 768
SapI	GCTCTTC	1 cut(s)	291
SaqAI	TTAA	4 cut(s)	51, 189, 246, 393
SatI	GCNGC	2 cut(s)	308, 775
Sau3AI	GATC	2 cut(s)	381, 737
SfaNI	GCATC	4 cut(s)	409, 542, 667, 713
Sse9I	AATT	8 cut(s)	154, 328, 395, 538, 600, 640, 662, 797
SseBI	AGGCCT	1 cut(s)	376
SsiI	CCGC	1 cut(s)	224
SspMI	CTAG	1 cut(s)	847
StuI	AGGCCT	1 cut(s)	376
StyI	CCWWGG	1 cut(s)	352
TaaI	ACNGT	4 cut(s)	166, 185, 523, 838
TaqI	TCGA	2 cut(s)	11, 176
TasI	AATT	8 cut(s)	154, 328, 395, 538, 600, 640, 662, 797
TfiI	GAWTC	3 cut(s)	85, 614, 646
Tru1I	TTAA	4 cut(s)	51, 189, 246, 393
Tru9I	TTAA	4 cut(s)	51, 189, 246, 393
TscAI	CASTG	2 cut(s)	415, 788
TseFI	GTSAC	3 cut(s)	284, 542, 711
TseI	GCWGC	2 cut(s)	307, 774
Tsp45I	GTSAC	3 cut(s)	284, 542, 711
TspDTI	ATGAA	2 cut(s)	276, 750
TspGWI	ACGGA	3 cut(s)	83, 645, 831
TspRI	CASTG	2 cut(s)	415, 788
Tth111I	GACNNNGTC	1 cut(s)	709
XcmI	CCANNNNNNNNNTGG	1 cut(s)	680
XmnI	GAANNNNTTC	2 cut(s)	200, 483
XspI	CTAG	1 cut(s)	847
Zsp2I	ATGCAT	1 cut(s)	826

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.