Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6D

Orthogroup ID

OG0005680

Physical Location & Seq

Genomic Coordinates Reverse (-)

61243511 .. 61243855

Gene Structure 345 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6DG433600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 345 bp

ATGACAGAAATTGTTCATGCACCTAGTGCAGAGACAAATGTAGAATTTAAGGAAGCCACTTGTACTTCGGACCCAAAGGTGTCAACATGTGAAGACCATACGGAGGGTTTACTGCACCAGTGTCTGGTTGGTAATTGGGTTCAACCTCTACTTCAGACAGCACCCGACGATTGTGGTGATGAAGATTGGCTTTTTGAGACGAAGCAGGAAAATAAACGTGGTTTTGAAAGATTCAAAGCTAGCAATGAGGTGGTGTCCCGTTGTACAAGTCAGACGTTGTGGCCACAAGCACACTGGTTGCCTGAGCCTGGCTTATCCGCACTACCCTTTACTGTTCCATTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

114

Amino Acids

12.83

Weight (kDa)

4.62

Isoelectric Point (pI)

52.49

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005680)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G20100 AT1G20100 AT1G75860 AT1G75860 AT1G76230
fragaria_vesca	FvH4_2g38160 FvH4_2g38160 FvH4_6g14711
prunus_persica	Prupe.1G362500_v2.0.a1 Prupe.1G362800_v2.0.a1 Prupe.1G362800_v2.0.a1 Prupe.1G362800_v2.0.a1
pyrus_communis	pycom15g00820
rosa_chinensis	RchiOBHm_Chr6g0303321
rosa_laevigata	RLG00000011092 RLG00000024466
rosa_multiflora	Rmu_sc0007252.1_g000006 Rmu_sc0027227.1_g000002
rosa_roxburghii	Rroxscaffold_6G00413280 Rroxscaffold_7G00164870
rosa_rugosa	Rorug06G0320400 Rorug06G0320500
rosa_samantha	Rh6AG434800 Rh6BG468300 Rh6CG446800 Rh6DG433600 Rh6DG433700
rosa_wichuraiana	Rw6G037650

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	124
AciI	CCGC	1 cut(s)	318
AcoI	YGGCCR	1 cut(s)	281
AcsI	RAATTY	1 cut(s)	44
AcuI	CTGAAG	1 cut(s)	137
AdeI	CACNNNGTG	1 cut(s)	26
AfaI	GTAC	2 cut(s)	64, 265
AfiI	CCNNNNNNNGG	3 cut(s)	103, 124, 308
AflIII	ACRYGT	1 cut(s)	86
AgsI	TTSAA	3 cut(s)	143, 227, 235
AjnI	CCWGG	1 cut(s)	307
AluBI	AGCT	1 cut(s)	239
AluI	AGCT	1 cut(s)	239
Alw26I	GTCTC	2 cut(s)	26, 191
AlwNI	CAGNNNCTG	1 cut(s)	124
AoxI	GGCC	1 cut(s)	281
ApoI	RAATTY	1 cut(s)	44
Asp700I	GAANNNNTTC	1 cut(s)	12
AspS9I	GGNCC	1 cut(s)	70
AsuHPI	GGTGA	1 cut(s)	188
AsuNHI	GCTAGC	1 cut(s)	239
AvaII	GGWCC	1 cut(s)	70
BalI	TGGCCA	1 cut(s)	283
BbsI	GAAGAC	1 cut(s)	99
BciT130I	CCWGG	1 cut(s)	309
BcoDI	GTCTC	2 cut(s)	26, 191
BfaI	CTAG	2 cut(s)	24, 240
Bme1390I	CCNGG	1 cut(s)	309
Bme18I	GGWCC	1 cut(s)	70
BmgT120I	GGNCC	1 cut(s)	70
BmiI	GGNNCC	1 cut(s)	72
BmrFI	CCNGG	1 cut(s)	309
BmtI	GCTAGC	1 cut(s)	243
BpiI	GAAGAC	1 cut(s)	99
Bpu10I	CCTNAGC	1 cut(s)	303
Bsc4I	CCNNNNNNNGG	3 cut(s)	103, 124, 308
Bse1I	ACTGG	2 cut(s)	118, 299
Bse3DI	GCAATG	1 cut(s)	250
BseBI	CCWGG	1 cut(s)	309
BseLI	CCNNNNNNNGG	3 cut(s)	103, 124, 308
BseMI	GCAATG	1 cut(s)	250
BseMII	CTCAG	1 cut(s)	294
BseNI	ACTGG	2 cut(s)	118, 299
BsgI	GTGCAG	2 cut(s)	48, 98
BshFI	GGCC	1 cut(s)	283
BslFI	GGGAC	1 cut(s)	241
BslI	CCNNNNNNNGG	3 cut(s)	103, 124, 308
BsmAI	GTCTC	2 cut(s)	26, 191
BsmBI	CGTCTC	1 cut(s)	191
BsmFI	GGGAC	1 cut(s)	241
BsnI	GGCC	1 cut(s)	283
Bsp1407I	TGTACA	1 cut(s)	263
BspACI	CCGC	1 cut(s)	318
BspANI	GGCC	1 cut(s)	283
BspCNI	CTCAG	1 cut(s)	295
BspLI	GGNNCC	1 cut(s)	72
BspOI	GCTAGC	1 cut(s)	243
BsrDI	GCAATG	1 cut(s)	250
BsrGI	TGTACA	1 cut(s)	263
BsrI	ACTGG	2 cut(s)	118, 299
Bst2UI	CCWGG	1 cut(s)	309
Bst4CI	ACNGT	1 cut(s)	334
BstAPI	GCANNNNNTGC	1 cut(s)	26
BstAUI	TGTACA	1 cut(s)	263
BstC8I	GCNNGC	1 cut(s)	241
BstDEI	CTNAG	1 cut(s)	303
BstMAI	GTCTC	2 cut(s)	26, 191
BstMWI	GCNNNNNNNGC	1 cut(s)	26
BstNI	CCWGG	1 cut(s)	309
BstNSI	RCATGY	1 cut(s)	90
BstSCI	CCNGG	1 cut(s)	307
BstV2I	GAAGAC	1 cut(s)	99
BsuRI	GGCC	1 cut(s)	283
BtsIMutI	CAGTG	2 cut(s)	125, 292
Cac8I	GCNNGC	1 cut(s)	241
CaiI	CAGNNNCTG	1 cut(s)	124
Cfr13I	GGNCC	1 cut(s)	70
Csp6I	GTAC	2 cut(s)	63, 264
CviAII	CATG	2 cut(s)	17, 87
CviJI	RGCY	6 cut(s)	56, 190, 239, 283, 307, 312
CviKI_1	RGCY	6 cut(s)	56, 190, 239, 283, 307, 312
CviQI	GTAC	2 cut(s)	63, 264
DdeI	CTNAG	1 cut(s)	303
DraIII	CACNNNGTG	1 cut(s)	26
EaeI	YGGCCR	1 cut(s)	281
Eco47I	GGWCC	1 cut(s)	70
Eco57I	CTGAAG	1 cut(s)	137
EcoRII	CCWGG	1 cut(s)	307
Esp3I	CGTCTC	1 cut(s)	191
FaeI	CATG	2 cut(s)	20, 90
FaiI	YATR	3 cut(s)	18, 88, 99
FalI	AAGNNNNNCTT	2 cut(s)	174, 206
FaqI	GGGAC	1 cut(s)	241
FatI	CATG	2 cut(s)	16, 86
FspBI	CTAG	2 cut(s)	24, 240
HaeIII	GGCC	1 cut(s)	283
Hin1II	CATG	2 cut(s)	20, 90
HincII	GTYRAC	1 cut(s)	84
HindII	GTYRAC	1 cut(s)	84
HinfI	GANTC	1 cut(s)	231
HphI	GGTGA	1 cut(s)	188
Hpy166II	GTNNAC	2 cut(s)	84, 110
Hpy188I	TCNGA	3 cut(s)	70, 156, 273
Hpy8I	GTNNAC	2 cut(s)	84, 110
Hpy99I	CGWCG	1 cut(s)	170
HpyCH4III	ACNGT	1 cut(s)	334
HpyCH4IV	ACGT	2 cut(s)	217, 275
HpyCH4V	TGCA	3 cut(s)	20, 29, 115
HpyF10VI	GCNNNNNNNGC	1 cut(s)	26
HpyF3I	CTNAG	1 cut(s)	303
HpySE526I	ACGT	2 cut(s)	217, 275
Hsp92II	CATG	2 cut(s)	20, 90
LpnPI	CCDG	7 cut(s)	110, 131, 191, 280, 294, 315, 321
MaeI	CTAG	2 cut(s)	24, 240
MaeII	ACGT	2 cut(s)	217, 275
MboII	GAAGA	2 cut(s)	104, 194
MlsI	TGGCCA	1 cut(s)	283
MluCI	AATT	3 cut(s)	9, 44, 133
MluNI	TGGCCA	1 cut(s)	283
MnlI	CCTC	3 cut(s)	97, 156, 241
Mox20I	TGGCCA	1 cut(s)	283
MroXI	GAANNNNTTC	1 cut(s)	12
MscI	TGGCCA	1 cut(s)	283
MseI	TTAA	1 cut(s)	48
Msp20I	TGGCCA	1 cut(s)	283
MspR9I	CCNGG	1 cut(s)	309
MvaI	CCWGG	1 cut(s)	309
MwoI	GCNNNNNNNGC	1 cut(s)	26
NheI	GCTAGC	1 cut(s)	239
NlaIII	CATG	2 cut(s)	20, 90
NlaIV	GGNNCC	1 cut(s)	72
NspI	RCATGY	1 cut(s)	90
PciI	ACATGT	1 cut(s)	86
PdmI	GAANNNNTTC	1 cut(s)	12
PfeI	GAWTC	1 cut(s)	231
PflMI	CCANNNNNTGG	1 cut(s)	124
PscI	ACATGT	1 cut(s)	86
Psp6I	CCWGG	1 cut(s)	307
PspGI	CCWGG	1 cut(s)	307
PspN4I	GGNNCC	1 cut(s)	72
PspPI	GGNCC	1 cut(s)	70
PstNI	CAGNNNCTG	1 cut(s)	124
RsaI	GTAC	2 cut(s)	64, 265
RsaNI	GTAC	2 cut(s)	63, 264
SaqAI	TTAA	1 cut(s)	48
Sau96I	GGNCC	1 cut(s)	70
ScrFI	CCNGG	1 cut(s)	309
SetI	ASST	7 cut(s)	25, 81, 148, 220, 241, 252, 278
SinI	GGWCC	1 cut(s)	70
Sse9I	AATT	3 cut(s)	9, 44, 133
SsiI	CCGC	1 cut(s)	318
SspMI	CTAG	2 cut(s)	24, 240
StyD4I	CCNGG	1 cut(s)	307
TaaI	ACNGT	1 cut(s)	334
TaiI	ACGT	2 cut(s)	220, 278
TasI	AATT	3 cut(s)	9, 44, 133
TatI	WGTACW	2 cut(s)	62, 263
TfiI	GAWTC	1 cut(s)	231
Tru1I	TTAA	1 cut(s)	48
Tru9I	TTAA	1 cut(s)	48
TscAI	CASTG	2 cut(s)	125, 299
TspDTI	ATGAA	2 cut(s)	5, 195
TspGWI	ACGGA	1 cut(s)	116
TspRI	CASTG	2 cut(s)	125, 299
Van91I	CCANNNNNTGG	1 cut(s)	124
VpaK11BI	GGWCC	1 cut(s)	70
XapI	RAATTY	1 cut(s)	44
XceI	RCATGY	1 cut(s)	90
XcmI	CCANNNNNNNNNTGG	2 cut(s)	125, 291
XmnI	GAANNNNTTC	1 cut(s)	12
XspI	CTAG	2 cut(s)	24, 240

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.