Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0005680

Physical Location & Seq

Genomic Coordinates Reverse (-)

47230109 .. 47233033

Gene Structure 2925 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0320500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 504 bp

ATGACGGTGGCGGCGGCGACAGTGAGTATAAGAAGAGAGACTCGGGGACAGTCTGAAGCCTCCTCTCCCTCTCTTCCCATATTTCCCTGCACCAGATCCCATTCCATGTCGACCCTCCGCTCCCATTGTCGCTGCTCCTCCTCCTCCTCCACTCCCAACCCGATCCCCGCCACCCAGCCTTCCCTCCTCGGAGGAAGCACCGCCGAGATTGTCCGGTGGTCCGGCCGTCGGAGATACACAGTCCAGATGCTTGAGATTGGCCGGGAAGCATGCACTTCTGCTGCATTTTCAAAGGAGCAAGCTAGTGCGCTGGTGTTGCCCACTGCCAGATTTATCAATTCTTGTGATAAGGTGCAAATTCAATTGGCACCTGAGAAATGTTTTAGTTTTTCCTCTTTCTTAGTTGACTTGTTTAAAGTGGTAAGTGTTTGCAGGAGGTTCAAAGATCATGTTATGCAGCTTGAAGCCCCATTGAGAGGAGTGGCACCAATGTTGACGTGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

167

Amino Acids

18.24

Weight (kDa)

9.57

Isoelectric Point (pI)

68.0

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005680)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G20100 AT1G20100 AT1G75860 AT1G75860 AT1G76230
fragaria_vesca	FvH4_2g38160 FvH4_2g38160 FvH4_6g14711
prunus_persica	Prupe.1G362500_v2.0.a1 Prupe.1G362800_v2.0.a1 Prupe.1G362800_v2.0.a1 Prupe.1G362800_v2.0.a1
pyrus_communis	pycom15g00820
rosa_chinensis	RchiOBHm_Chr6g0303321
rosa_laevigata	RLG00000011092 RLG00000024466
rosa_multiflora	Rmu_sc0007252.1_g000006 Rmu_sc0027227.1_g000002
rosa_roxburghii	Rroxscaffold_6G00413280 Rroxscaffold_7G00164870
rosa_rugosa	Rorug06G0320400 Rorug06G0320500
rosa_samantha	Rh6AG434800 Rh6BG468300 Rh6CG446800 Rh6DG433600 Rh6DG433700
rosa_wichuraiana	Rw6G037650

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	367, 484
AccBSI	CCGCTC	1 cut(s)	120
AccI	GTMKAC	1 cut(s)	110
AciI	CCGC	5 cut(s)	11, 14, 118, 168, 201
AclWI	GGATC	2 cut(s)	90, 157
AcoI	YGGCCR	2 cut(s)	223, 259
AcsI	RAATTY	1 cut(s)	357
AcuI	CTGAAG	1 cut(s)	75
AfiI	CCNNNNNNNGG	2 cut(s)	228, 476
AgsI	TTSAA	4 cut(s)	291, 362, 442, 464
AjiI	CACGTC	1 cut(s)	498
AluBI	AGCT	2 cut(s)	302, 460
AluI	AGCT	2 cut(s)	302, 460
Alw26I	GTCTC	1 cut(s)	32
AlwI	GGATC	2 cut(s)	90, 157
Ama87I	CYCGRG	1 cut(s)	42
AoxI	GGCC	2 cut(s)	223, 259
ApeKI	GCWGC	3 cut(s)	132, 281, 457
ApoI	RAATTY	1 cut(s)	357
AspLEI	GCGC	1 cut(s)	310
AspS9I	GGNCC	1 cut(s)	219
AsuC2I	CCSGG	1 cut(s)	263
AvaI	CYCGRG	1 cut(s)	42
AvaII	GGWCC	1 cut(s)	219
BanI	GGYRCC	2 cut(s)	367, 484
BbvI	GCAGC	3 cut(s)	119, 268, 469
BceAI	ACGGC	1 cut(s)	210
BcnI	CCSGG	1 cut(s)	263
BcoDI	GTCTC	1 cut(s)	32
BfaI	CTAG	1 cut(s)	303
BisI	GCNGC	5 cut(s)	12, 15, 133, 282, 458
BlsI	GCNGC	5 cut(s)	13, 16, 134, 283, 459
Bme1390I	CCNGG	1 cut(s)	263
Bme18I	GGWCC	1 cut(s)	219
BmeT110I	CYCGRG	1 cut(s)	42
BmgBI	CACGTC	1 cut(s)	498
BmgT120I	GGNCC	1 cut(s)	219
BmiI	GGNNCC	2 cut(s)	369, 486
BmrFI	CCNGG	1 cut(s)	263
BmsI	GCATC	1 cut(s)	237
BpuEI	CTTGAG	1 cut(s)	272
BpuMI	CCSGG	1 cut(s)	263
BsaJI	CCNNGG	1 cut(s)	187
BsaWI	WCCGGW	1 cut(s)	213
Bsc4I	CCNNNNNNNGG	2 cut(s)	228, 476
BseDI	CCNNGG	1 cut(s)	187
BseLI	CCNNNNNNNGG	2 cut(s)	228, 476
BseMII	CTCAG	1 cut(s)	363
BseRI	GAGGAG	7 cut(s)	52, 127, 130, 133, 136, 176, 492
BseX3I	CGGCCG	1 cut(s)	223
BseXI	GCAGC	3 cut(s)	119, 268, 469
BseYI	CCCAGC	1 cut(s)	174
BsgI	GTGCAG	1 cut(s)	73
Bsh1285I	CGRYCG	1 cut(s)	226
BshFI	GGCC	2 cut(s)	225, 261
BshNI	GGYRCC	2 cut(s)	367, 484
BsiEI	CGRYCG	1 cut(s)	226
BsiHKCI	CYCGRG	1 cut(s)	42
BsiSI	CCGG	3 cut(s)	214, 222, 262
BslFI	GGGAC	1 cut(s)	60
BslI	CCNNNNNNNGG	2 cut(s)	228, 476
BsmAI	GTCTC	1 cut(s)	32
BsmFI	GGGAC	1 cut(s)	60
BsnI	GGCC	2 cut(s)	225, 261
BsoBI	CYCGRG	1 cut(s)	42
Bsp143I	GATC	3 cut(s)	95, 162, 445
BspACI	CCGC	5 cut(s)	11, 14, 118, 168, 201
BspANI	GGCC	2 cut(s)	225, 261
BspCNI	CTCAG	1 cut(s)	364
BspLI	GGNNCC	2 cut(s)	369, 486
BspPI	GGATC	2 cut(s)	90, 157
BspT107I	GGYRCC	2 cut(s)	367, 484
BsrBI	CCGCTC	1 cut(s)	120
BssECI	CCNNGG	1 cut(s)	187
BssMI	GATC	3 cut(s)	95, 162, 445
Bst4CI	ACNGT	4 cut(s)	7, 22, 51, 241
Bst6I	CTCTTC	2 cut(s)	28, 78
BstC8I	GCNNGC	2 cut(s)	271, 300
BstDEI	CTNAG	2 cut(s)	372, 400
BstHHI	GCGC	1 cut(s)	310
BstKTI	GATC	3 cut(s)	98, 165, 448
BstMAI	GTCTC	1 cut(s)	32
BstMBI	GATC	3 cut(s)	95, 162, 445
BstMCI	CGRYCG	1 cut(s)	226
BstMWI	GCNNNNNNNGC	1 cut(s)	316
BstNSI	RCATGY	1 cut(s)	273
BstSCI	CCNGG	1 cut(s)	261
BstV1I	GCAGC	3 cut(s)	119, 268, 469
BstX2I	RGATCY	1 cut(s)	95
BstYI	RGATCY	1 cut(s)	95
BstZI	CGGCCG	1 cut(s)	223
BsuRI	GGCC	2 cut(s)	225, 261
BtrI	CACGTC	1 cut(s)	498
BtsI	GCAGTG	1 cut(s)	321
BtsIMutI	CAGTG	2 cut(s)	27, 321
Cac8I	GCNNGC	2 cut(s)	271, 300
CfoI	GCGC	1 cut(s)	310
Cfr13I	GGNCC	1 cut(s)	219
CviAII	CATG	3 cut(s)	106, 270, 449
CviJI	RGCY	7 cut(s)	59, 178, 225, 261, 302, 460, 467
CviKI_1	RGCY	7 cut(s)	59, 178, 225, 261, 302, 460, 467
DdeI	CTNAG	2 cut(s)	372, 400
DpnI	GATC	3 cut(s)	97, 164, 447
DpnII	GATC	3 cut(s)	95, 162, 445
DraI	TTTAAA	1 cut(s)	415
EaeI	YGGCCR	2 cut(s)	223, 259
EagI	CGGCCG	1 cut(s)	223
Eam1104I	CTCTTC	2 cut(s)	28, 78
EarI	CTCTTC	2 cut(s)	28, 78
EclXI	CGGCCG	1 cut(s)	223
Eco47I	GGWCC	1 cut(s)	219
Eco52I	CGGCCG	1 cut(s)	223
Eco57I	CTGAAG	1 cut(s)	75
Eco88I	CYCGRG	1 cut(s)	42
FaeI	CATG	3 cut(s)	109, 273, 452
FaiI	YATR	6 cut(s)	29, 80, 107, 271, 450, 455
FaqI	GGGAC	1 cut(s)	60
FatI	CATG	3 cut(s)	105, 269, 448
FauI	CCCGC	1 cut(s)	175
FblI	GTMKAC	1 cut(s)	110
Fnu4HI	GCNGC	5 cut(s)	12, 15, 133, 282, 458
Fsp4HI	GCNGC	5 cut(s)	12, 15, 133, 282, 458
FspBI	CTAG	1 cut(s)	303
GlaI	GCGC	1 cut(s)	309
GluI	GCNGC	5 cut(s)	12, 15, 133, 282, 458
GsaI	CCCAGC	1 cut(s)	178
HaeIII	GGCC	2 cut(s)	225, 261
HapII	CCGG	3 cut(s)	214, 222, 262
HhaI	GCGC	1 cut(s)	310
Hin1II	CATG	3 cut(s)	109, 273, 452
Hin6I	GCGC	1 cut(s)	308
HinP1I	GCGC	1 cut(s)	308
HincII	GTYRAC	3 cut(s)	111, 406, 495
HindII	GTYRAC	3 cut(s)	111, 406, 495
HinfI	GANTC	1 cut(s)	40
HpaII	CCGG	3 cut(s)	214, 222, 262
Hpy166II	GTNNAC	3 cut(s)	111, 406, 495
Hpy188I	TCNGA	3 cut(s)	55, 191, 231
Hpy188III	TCNNGA	1 cut(s)	244
Hpy8I	GTNNAC	3 cut(s)	111, 406, 495
Hpy99I	CGWCG	1 cut(s)	231
HpyAV	CCTTC	1 cut(s)	189
HpyCH4III	ACNGT	4 cut(s)	7, 22, 51, 241
HpyCH4IV	ACGT	1 cut(s)	497
HpyCH4V	TGCA	6 cut(s)	90, 273, 284, 355, 432, 457
HpyF10VI	GCNNNNNNNGC	1 cut(s)	316
HpyF3I	CTNAG	2 cut(s)	372, 400
HpySE526I	ACGT	1 cut(s)	497
Hsp92II	CATG	3 cut(s)	109, 273, 452
HspAI	GCGC	1 cut(s)	308
Kzo9I	GATC	3 cut(s)	95, 162, 445
LmnI	GCTCC	3 cut(s)	125, 140, 295
Lsp1109I	GCAGC	3 cut(s)	119, 268, 469
LweI	GCATC	1 cut(s)	237
MaeI	CTAG	1 cut(s)	303
MaeII	ACGT	1 cut(s)	497
MalI	GATC	3 cut(s)	97, 164, 447
MbiI	CCGCTC	1 cut(s)	120
MboI	GATC	3 cut(s)	95, 162, 445
MboII	GAAGA	2 cut(s)	45, 65
MfeI	CAATTG	1 cut(s)	362
MflI	RGATCY	1 cut(s)	95
MluCI	AATT	3 cut(s)	337, 357, 362
MlyI	GAGTC	1 cut(s)	34
MmeI	TCCRAC	1 cut(s)	209
MseI	TTAA	1 cut(s)	414
MspI	CCGG	3 cut(s)	214, 222, 262
MspR9I	CCNGG	1 cut(s)	263
MunI	CAATTG	1 cut(s)	362
MwoI	GCNNNNNNNGC	1 cut(s)	316
NciI	CCSGG	1 cut(s)	263
NdeII	GATC	3 cut(s)	95, 162, 445
NlaIII	CATG	3 cut(s)	109, 273, 452
NlaIV	GGNNCC	2 cut(s)	369, 486
NmeAIII	GCCGAG	1 cut(s)	229
NspI	RCATGY	1 cut(s)	273
PaeI	GCATGC	1 cut(s)	273
PkrI	GCNGC	5 cut(s)	13, 16, 134, 283, 459
PleI	GAGTC	1 cut(s)	34
PpsI	GAGTC	1 cut(s)	34
PspFI	CCCAGC	1 cut(s)	174
PspN4I	GGNNCC	2 cut(s)	369, 486
PspPI	GGNCC	1 cut(s)	219
PsuI	RGATCY	1 cut(s)	95
SalI	GTCGAC	1 cut(s)	109
SaqAI	TTAA	1 cut(s)	414
SatI	GCNGC	5 cut(s)	12, 15, 133, 282, 458
Sau3AI	GATC	3 cut(s)	95, 162, 445
Sau96I	GGNCC	1 cut(s)	219
SchI	GAGTC	1 cut(s)	34
ScrFI	CCNGG	1 cut(s)	263
SetI	ASST	6 cut(s)	304, 354, 373, 440, 462, 500
SfaNI	GCATC	1 cut(s)	237
SinI	GGWCC	1 cut(s)	219
SmlI	CTYRAG	1 cut(s)	251
SmoI	CTYRAG	1 cut(s)	251
SphI	GCATGC	1 cut(s)	273
Sse9I	AATT	3 cut(s)	337, 357, 362
SsiI	CCGC	5 cut(s)	11, 14, 118, 168, 201
SspMI	CTAG	1 cut(s)	303
StyD4I	CCNGG	1 cut(s)	261
TaaI	ACNGT	4 cut(s)	7, 22, 51, 241
TaiI	ACGT	1 cut(s)	500
TaqI	TCGA	1 cut(s)	110
TasI	AATT	3 cut(s)	337, 357, 362
TauI	GCSGC	2 cut(s)	14, 17
Tru1I	TTAA	1 cut(s)	414
Tru9I	TTAA	1 cut(s)	414
TscAI	CASTG	2 cut(s)	27, 328
TseI	GCWGC	3 cut(s)	132, 281, 457
TspRI	CASTG	2 cut(s)	27, 328
VpaK11BI	GGWCC	1 cut(s)	219
XapI	RAATTY	1 cut(s)	357
XceI	RCATGY	1 cut(s)	273
XmiI	GTMKAC	1 cut(s)	110
XspI	CTAG	1 cut(s)	303

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.