Prupe.1G362500_v2.0.a1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
OG0005680
Physical Location & Seq
Forward (+)
33342772 .. 33344882
2111 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G362500.1

Sequence Viewer

Length: 909 bp
ATGGCTCGGGCCTTGAAGTACACCTTTAGCGATTATGCGAGGAACGCAGTGAGTAGAGAGGCCTTGCTCGAACCGACTAAGCTCCAGAGAGAGGATAAAAATGGCAAGAGTCAGAGGAAGAAAGAGAGAAGGGAGATAAAGGGACAAGGGCGTAAAGAGAAGGATGAGTCCATACCTGGTTATGTTACTCTTCACAACGTGAAAAGCCTTGATGACAAAAAGTGTTTCCAGCAAAAGAAGGGTAAAAAAGGGGAAGCAAAGGGATGGTGTCCTCGGAAAATTGAACATGAAGTTGATCAACTGGAGAGAAGTGACATTACGAACGAACATGGGCTGCCAACCTGTATAGAGAACACTTCCTACTTGTCTGATGGAACCCAAAGCAGCAAGAAAAGCAAGCCTTTGATTGTTCGCATTAAATTGTTTAAGCACAGTGAACCAGATGCCTCACTTGCCTGCTCTCCTTCGGGAAGGGTAGATTTGCTTCCTCCAGAGAGAACGGAAGTTGTTCTTGCACCCAGTCAACCCAGTGCAGAGACAAATGTACAACTCGGGCGGGTCTCTTCAAAACCTGACCAAGATTTACCCTGTTCAACATCAGAGGGGATGGAAACGATTGGTCAGAAGAGAAGTGCGAGTGCTGCATTTGAAAATCAGATTCAGAGTGAAGATTCACTGCATGCAACTCTGATTGAGAATTGGATCCCTCCCCCGATTCAATTTGCCGATGTTGGTGATGGTGATGAAGAATGGCTCTTTGGGACCAAGCATCAAAACAGATGTGGGTCGAAAAGATTTAAAGCTTCTAACAATGAGGTCTCTAGTTTTACAAGGAGCACGCAGTGGCCACAAGCACAGTGGTTGTTGGAGGCTGGCGTATATGCATTATCCTTCACGGTTCCATTATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

303

Amino Acids

33.86

Weight (kDa)

8.61

Isoelectric Point (pI)

42.24

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 556
AclWI GGATC 2 cut(s) 697, 710
AcoI YGGCCR 1 cut(s) 845
AdeI CACNNNGTG 2 cut(s) 199, 843
AfaI GTAC 2 cut(s) 20, 546
AfiI CCNNNNNNNGG 1 cut(s) 91
AgsI TTSAA 6 cut(s) 16, 284, 567, 594, 650, 719
AjnI CCWGG 1 cut(s) 175
AjuI GAANNNNNNNTTGG 2 cut(s) 741, 773
AluBI AGCT 2 cut(s) 82, 803
AluI AGCT 2 cut(s) 82, 803
Alw21I GWGCWC 1 cut(s) 839
Alw26I GTCTC 3 cut(s) 530, 565, 823
AlwI GGATC 2 cut(s) 697, 710
Ama87I CYCGRG 2 cut(s) 6, 551
AoxI GGCC 3 cut(s) 9, 60, 845
ApeKI GCWGC 3 cut(s) 334, 384, 641
Asp700I GAANNNNTTC 1 cut(s) 507
AspS9I GGNCC 2 cut(s) 9, 762
AsuHPI GGTGA 2 cut(s) 746, 752
AvaI CYCGRG 2 cut(s) 6, 551
AvaII GGWCC 1 cut(s) 762
BalI TGGCCA 1 cut(s) 847
BamHI GGATCC 1 cut(s) 702
BarI GAAGNNNNNNTAC 4 cut(s) 301, 333, 468, 500
Bbv12I GWGCWC 1 cut(s) 839
BbvI GCAGC 3 cut(s) 321, 396, 628
BccI CCATC 4 cut(s) 258, 365, 601, 731
BciT130I CCWGG 1 cut(s) 177
BclI TGATCA 1 cut(s) 295
BcoDI GTCTC 3 cut(s) 530, 565, 823
BfaI CTAG 1 cut(s) 822
BisI GCNGC 3 cut(s) 335, 385, 642
BlsI GCNGC 3 cut(s) 336, 386, 643
Bme1390I CCNGG 1 cut(s) 177
Bme18I GGWCC 1 cut(s) 762
BmeT110I CYCGRG 2 cut(s) 6, 551
BmgT120I GGNCC 2 cut(s) 9, 762
BmiI GGNNCC 4 cut(s) 376, 704, 763, 900
BmrFI CCNGG 1 cut(s) 177
BmrI ACTGGG 2 cut(s) 513, 522
BmsI GCATC 2 cut(s) 433, 778
BmuI ACTGGG 2 cut(s) 513, 522
BpmI CTGGAG 3 cut(s) 68, 323, 474
BsaI GGTCTC 2 cut(s) 565, 823
BsaJI CCNNGG 1 cut(s) 272
Bsc4I CCNNNNNNNGG 1 cut(s) 91
Bse1I ACTGG 3 cut(s) 306, 519, 528
BseBI CCWGG 1 cut(s) 177
BseDI CCNNGG 1 cut(s) 272
BseGI GGATG 3 cut(s) 169, 269, 612
BseLI CCNNNNNNNGG 1 cut(s) 91
BseNI ACTGG 3 cut(s) 306, 519, 528
BseXI GCAGC 3 cut(s) 321, 396, 628
BsgI GTGCAG 1 cut(s) 552
BshFI GGCC 3 cut(s) 11, 62, 847
BsiHKAI GWGCWC 1 cut(s) 839
BsiHKCI CYCGRG 2 cut(s) 6, 551
BslFI GGGAC 2 cut(s) 156, 775
BslI CCNNNNNNNGG 1 cut(s) 91
BsmAI GTCTC 3 cut(s) 530, 565, 823
BsmFI GGGAC 2 cut(s) 156, 775
BsnI GGCC 3 cut(s) 11, 62, 847
Bso31I GGTCTC 2 cut(s) 565, 823
BsoBI CYCGRG 2 cut(s) 6, 551
Bsp1286I GDGCHC 1 cut(s) 839
Bsp1407I TGTACA 1 cut(s) 544
Bsp143I GATC 2 cut(s) 295, 702
BspACI CCGC 1 cut(s) 556
BspANI GGCC 3 cut(s) 11, 62, 847
BspLI GGNNCC 4 cut(s) 376, 704, 763, 900
BspPI GGATC 2 cut(s) 697, 710
BspTNI GGTCTC 2 cut(s) 565, 823
BsrGI TGTACA 1 cut(s) 544
BsrI ACTGG 3 cut(s) 306, 519, 528
BssECI CCNNGG 1 cut(s) 272
BssMI GATC 2 cut(s) 295, 702
Bst2UI CCWGG 1 cut(s) 177
Bst4CI ACNGT 3 cut(s) 434, 858, 898
Bst6I CTCTTC 3 cut(s) 195, 568, 620
BstAUI TGTACA 1 cut(s) 544
BstC8I GCNNGC 5 cut(s) 398, 457, 681, 839, 874
BstDEI CTNAG 1 cut(s) 78
BstF5I GGATG 3 cut(s) 169, 269, 612
BstKTI GATC 2 cut(s) 298, 705
BstMAI GTCTC 3 cut(s) 530, 565, 823
BstMBI GATC 2 cut(s) 295, 702
BstMWI GCNNNNNNNGC 4 cut(s) 44, 393, 452, 641
BstNI CCWGG 1 cut(s) 177
BstNSI RCATGY 1 cut(s) 683
BstSCI CCNGG 1 cut(s) 175
BstV1I GCAGC 3 cut(s) 321, 396, 628
BstX2I RGATCY 1 cut(s) 702
BstYI RGATCY 1 cut(s) 702
BsuRI GGCC 3 cut(s) 11, 62, 847
BtsCI GGATG 3 cut(s) 169, 269, 612
BtsI GCAGTG 3 cut(s) 54, 674, 848
BtsIMutI CAGTG 6 cut(s) 54, 439, 535, 674, 848, 863
Cac8I GCNNGC 5 cut(s) 398, 457, 681, 839, 874
Cfr13I GGNCC 2 cut(s) 9, 762
CsiI ACCWGGT 1 cut(s) 175
Csp6I GTAC 2 cut(s) 19, 545
CspCI CAANNNNNGTGG 2 cut(s) 839, 874
CviAII CATG 3 cut(s) 287, 329, 680
CviQI GTAC 2 cut(s) 19, 545
DdeI CTNAG 1 cut(s) 78
DpnI GATC 2 cut(s) 297, 704
DpnII GATC 2 cut(s) 295, 702
DraI TTTAAA 1 cut(s) 799
DraIII CACNNNGTG 2 cut(s) 199, 843
EaeI YGGCCR 1 cut(s) 845
Eam1104I CTCTTC 3 cut(s) 195, 568, 620
EarI CTCTTC 3 cut(s) 195, 568, 620
Eco147I AGGCCT 1 cut(s) 62
Eco31I GGTCTC 2 cut(s) 565, 823
Eco47I GGWCC 1 cut(s) 762
Eco88I CYCGRG 2 cut(s) 6, 551
EcoRII CCWGG 1 cut(s) 175
EcoT22I ATGCAT 1 cut(s) 886
FaeI CATG 3 cut(s) 290, 332, 683
FalI AAGNNNNNCTT 6 cut(s) 8, 40, 385, 417, 495, 527
FaqI GGGAC 2 cut(s) 156, 775
FatI CATG 3 cut(s) 286, 328, 679
FauI CCCGC 1 cut(s) 549
FbaI TGATCA 1 cut(s) 295
Fnu4HI GCNGC 3 cut(s) 335, 385, 642
FokI GGATG 3 cut(s) 176, 276, 619
Fsp4HI GCNGC 3 cut(s) 335, 385, 642
FspBI CTAG 1 cut(s) 822
GluI GCNGC 3 cut(s) 335, 385, 642
GsuI CTGGAG 3 cut(s) 68, 323, 474
HaeIII GGCC 3 cut(s) 11, 62, 847
Hin1II CATG 3 cut(s) 290, 332, 683
HincII GTYRAC 1 cut(s) 524
HindII GTYRAC 1 cut(s) 524
HindIII AAGCTT 1 cut(s) 801
HinfI GANTC 5 cut(s) 109, 167, 658, 671, 715
HphI GGTGA 2 cut(s) 746, 752
Hpy166II GTNNAC 3 cut(s) 21, 437, 524
Hpy188I TCNGA 8 cut(s) 114, 276, 370, 601, 624, 657, 663, 690
Hpy188III TCNNGA 3 cut(s) 85, 468, 491
Hpy8I GTNNAC 3 cut(s) 21, 437, 524
HpyAV CCTTC 6 cut(s) 123, 154, 232, 465, 474, 901
HpyCH4III ACNGT 3 cut(s) 434, 858, 898
HpyCH4IV ACGT 1 cut(s) 198
HpyCH4V TGCA 6 cut(s) 515, 533, 644, 679, 683, 884
HpyF10VI GCNNNNNNNGC 4 cut(s) 44, 393, 452, 641
HpyF3I CTNAG 1 cut(s) 78
HpySE526I ACGT 1 cut(s) 198
Hsp92II CATG 3 cut(s) 290, 332, 683
Ksp22I TGATCA 1 cut(s) 295
Kzo9I GATC 2 cut(s) 295, 702
LmnI GCTCC 2 cut(s) 87, 834
Lsp1109I GCAGC 3 cut(s) 321, 396, 628
LweI GCATC 2 cut(s) 433, 778
MabI ACCWGGT 1 cut(s) 175
MaeI CTAG 1 cut(s) 822
MaeII ACGT 1 cut(s) 198
MaeIII GTNAC 2 cut(s) 184, 311
MalI GATC 2 cut(s) 297, 704
MboI GATC 2 cut(s) 295, 702
MboII GAAGA 6 cut(s) 130, 182, 555, 637, 680, 758
MflI RGATCY 1 cut(s) 702
MhlI GDGCHC 1 cut(s) 839
MlsI TGGCCA 1 cut(s) 847
MluCI AATT 4 cut(s) 279, 419, 697, 719
MluNI TGGCCA 1 cut(s) 847
MlyI GAGTC 2 cut(s) 118, 176
MmeI TCCRAC 1 cut(s) 846
Mox20I TGGCCA 1 cut(s) 847
Mph1103I ATGCAT 1 cut(s) 886
MroXI GAANNNNTTC 1 cut(s) 507
MscI TGGCCA 1 cut(s) 847
MseI TTAA 3 cut(s) 417, 426, 798
Msp20I TGGCCA 1 cut(s) 847
MspR9I CCNGG 1 cut(s) 177
MvaI CCWGG 1 cut(s) 177
MwoI GCNNNNNNNGC 4 cut(s) 44, 393, 452, 641
NdeII GATC 2 cut(s) 295, 702
NlaIII CATG 3 cut(s) 290, 332, 683
NlaIV GGNNCC 4 cut(s) 376, 704, 763, 900
NmuCI GTSAC 1 cut(s) 311
NsiI ATGCAT 1 cut(s) 886
NspI RCATGY 1 cut(s) 683
PaeI GCATGC 1 cut(s) 683
PceI AGGCCT 1 cut(s) 62
PdmI GAANNNNTTC 1 cut(s) 507
PfeI GAWTC 3 cut(s) 658, 671, 715
PkrI GCNGC 3 cut(s) 336, 386, 643
PleI GAGTC 2 cut(s) 117, 175
PpsI GAGTC 2 cut(s) 117, 175
Psp6I CCWGG 1 cut(s) 175
PspGI CCWGG 1 cut(s) 175
PspN4I GGNNCC 4 cut(s) 376, 704, 763, 900
PspPI GGNCC 2 cut(s) 9, 762
PsrI GAACNNNNNNTAC 2 cut(s) 344, 376
PsuI RGATCY 1 cut(s) 702
RsaI GTAC 2 cut(s) 20, 546
RsaNI GTAC 2 cut(s) 19, 545
SaqAI TTAA 3 cut(s) 417, 426, 798
SatI GCNGC 3 cut(s) 335, 385, 642
Sau3AI GATC 2 cut(s) 295, 702
Sau96I GGNCC 2 cut(s) 9, 762
SchI GAGTC 2 cut(s) 118, 176
ScrFI CCNGG 1 cut(s) 177
SduI GDGCHC 1 cut(s) 839
SetI ASST 8 cut(s) 26, 84, 178, 201, 344, 574, 805, 819
SexAI ACCWGGT 1 cut(s) 175
SfaNI GCATC 2 cut(s) 433, 778
SinI GGWCC 1 cut(s) 762
SphI GCATGC 1 cut(s) 683
Sse9I AATT 4 cut(s) 279, 419, 697, 719
SseBI AGGCCT 1 cut(s) 62
SsiI CCGC 1 cut(s) 556
SspMI CTAG 1 cut(s) 822
StuI AGGCCT 1 cut(s) 62
StyD4I CCNGG 1 cut(s) 175
TaaI ACNGT 3 cut(s) 434, 858, 898
TaiI ACGT 1 cut(s) 201
TaqI TCGA 2 cut(s) 69, 788
TasI AATT 4 cut(s) 279, 419, 697, 719
TatI WGTACW 2 cut(s) 18, 544
TfiI GAWTC 3 cut(s) 658, 671, 715
Tru1I TTAA 3 cut(s) 417, 426, 798
Tru9I TTAA 3 cut(s) 417, 426, 798
TscAI CASTG 6 cut(s) 54, 439, 535, 681, 848, 863
TseFI GTSAC 1 cut(s) 311
TseI GCWGC 3 cut(s) 334, 384, 641
Tsp45I GTSAC 1 cut(s) 311
TspDTI ATGAA 2 cut(s) 303, 759
TspGWI ACGGA 1 cut(s) 515
TspRI CASTG 6 cut(s) 54, 439, 535, 681, 848, 863
VpaK11BI GGWCC 1 cut(s) 762
XceI RCATGY 1 cut(s) 683
XcmI CCANNNNNNNNNTGG 1 cut(s) 855
XmnI GAANNNNTTC 1 cut(s) 507
XspI CTAG 1 cut(s) 822
Zsp2I ATGCAT 1 cut(s) 886
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.