RchiOBHm_Chr6g0303321

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
OG0005680
Physical Location & Seq
Reverse (-)
63078962 .. 63081272
2311 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ27249

Sequence Viewer

Length: 810 bp
ATGTCTCGGTGCTTGCCTTACACGCCTTCCGTGAAGGCAGTGAATAGAGAGGCCTTGCTCGAACCGATTAAGCTCCAGAGAGAATTGGAGAAGAAAGCCAAGACACATAGGAAGAAAGAGAAGAAAGAGAAGAAGGAGAAGAAAGAGAAGGGGGAGAAGAGAAAATGGCATAAAGAGGATGAGTTATCTACTTGCGCCGTTATTTGGGGAGTGGATGCAATAGCAAGGGGCCCTCAAGTAGTAGAATCAAATCAACTGGAGAAAAGTGACATTACCGAAGAACATGAATTACCAACCTTGTCTGATAACATTTGCTACTTGTCTGATGGTATCCAAAGTGGCACAAAGAGGAAAAGAACCATCATTCGCATTAAATCATTGCCCAAGTGCAGTGATACAGAGTCCTCACATGCCTCTTGTGCCATGCATACTTCTGGGAAGACAGATTTCCAAACAGATCTAAAGATGACAGAAATTGTTCATGCACCTAGTGCAGAGACAAATGTAGAATTTGAGGAAGCCACTTGTGCTTCGGACCAAAAGGTGTCAACATGTGAAGACCATACGGAGGGTTTACTGCACCGGTCTCTGATTGGTAATTGGGTTCAACCTCAACTTCAGACAGCACCCGACGATTGTGGTGATGAAGATTGGCTTTTTGAGACGAAGCAGGAAAATAAACGTGGTTTTGAAAGATTCAAAGCTAGCAATGAGGTGGTGTCCCGTTGTACAAGTCAGACGTTGTGGCCACAAGCACACTGGTTACCTGATCCTGGCTTATCCGCACTACCCTTTACTGTTCCATTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

269

Amino Acids

30.55

Weight (kDa)

6.34

Isoelectric Point (pI)

50.0

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 783
AclWI GGATC 1 cut(s) 764
AcoI YGGCCR 1 cut(s) 746
AcsI RAATTY 1 cut(s) 509
AcuI CTGAAG 1 cut(s) 602
AdeI CACNNNGTG 1 cut(s) 491
AfaI GTAC 1 cut(s) 730
AfiI CCNNNNNNNGG 3 cut(s) 204, 568, 773
AflIII ACRYGT 1 cut(s) 551
AgeI ACCGGT 1 cut(s) 582
AgsI TTSAA 3 cut(s) 608, 692, 700
AjnI CCWGG 1 cut(s) 772
AluBI AGCT 2 cut(s) 73, 704
AluI AGCT 2 cut(s) 73, 704
Alw26I GTCTC 4 cut(s) 9, 491, 591, 656
AlwI GGATC 1 cut(s) 764
AoxI GGCC 3 cut(s) 51, 229, 746
ApaI GGGCCC 1 cut(s) 233
ApoI RAATTY 1 cut(s) 509
AsiGI ACCGGT 1 cut(s) 582
Asp700I GAANNNNTTC 1 cut(s) 477
AspLEI GCGC 1 cut(s) 197
AspS9I GGNCC 3 cut(s) 229, 230, 535
AsuHPI GGTGA 1 cut(s) 653
AsuNHI GCTAGC 1 cut(s) 704
AvaII GGWCC 1 cut(s) 535
BaeGI GKGCMC 1 cut(s) 233
BalI TGGCCA 1 cut(s) 748
BanII GRGCYC 1 cut(s) 233
BbsI GAAGAC 2 cut(s) 446, 564
BccI CCATC 2 cut(s) 320, 368
BceAI ACGGC 1 cut(s) 182
BciT130I CCWGG 1 cut(s) 774
BciVI GTATCC 1 cut(s) 341
BcoDI GTCTC 4 cut(s) 9, 491, 591, 656
BfaI CTAG 2 cut(s) 489, 705
BfuI GTATCC 1 cut(s) 341
BglII AGATCT 1 cut(s) 457
Bme1390I CCNGG 1 cut(s) 774
Bme18I GGWCC 1 cut(s) 535
BmgT120I GGNCC 3 cut(s) 229, 230, 535
BmiI GGNNCC 2 cut(s) 230, 231
BmrFI CCNGG 1 cut(s) 774
BmsI GCATC 1 cut(s) 205
BmtI GCTAGC 1 cut(s) 708
BpiI GAAGAC 2 cut(s) 446, 564
BpmI CTGGAG 2 cut(s) 59, 278
BpuEI CTTGAG 1 cut(s) 219
BsaI GGTCTC 1 cut(s) 591
BsaWI WCCGGW 1 cut(s) 582
Bsc4I CCNNNNNNNGG 3 cut(s) 204, 568, 773
Bse118I RCCGGY 1 cut(s) 582
Bse1I ACTGG 2 cut(s) 261, 764
Bse3DI GCAATG 2 cut(s) 377, 715
BseBI CCWGG 1 cut(s) 774
BseGI GGATG 2 cut(s) 184, 220
BseLI CCNNNNNNNGG 3 cut(s) 204, 568, 773
BseMI GCAATG 2 cut(s) 377, 715
BseNI ACTGG 2 cut(s) 261, 764
BseSI GKGCMC 1 cut(s) 233
BsgI GTGCAG 3 cut(s) 409, 513, 563
BshFI GGCC 3 cut(s) 53, 231, 748
BshTI ACCGGT 1 cut(s) 582
BsiSI CCGG 1 cut(s) 583
BslFI GGGAC 1 cut(s) 706
BslI CCNNNNNNNGG 3 cut(s) 204, 568, 773
BsmAI GTCTC 4 cut(s) 9, 491, 591, 656
BsmBI CGTCTC 1 cut(s) 656
BsmFI GGGAC 1 cut(s) 706
BsnI GGCC 3 cut(s) 53, 231, 748
Bso31I GGTCTC 1 cut(s) 591
Bsp120I GGGCCC 1 cut(s) 229
Bsp1286I GDGCHC 1 cut(s) 233
Bsp1407I TGTACA 1 cut(s) 728
Bsp143I GATC 2 cut(s) 457, 769
BspACI CCGC 1 cut(s) 783
BspANI GGCC 3 cut(s) 53, 231, 748
BspLI GGNNCC 2 cut(s) 230, 231
BspOI GCTAGC 1 cut(s) 708
BspPI GGATC 1 cut(s) 764
BspTNI GGTCTC 1 cut(s) 591
BsrDI GCAATG 2 cut(s) 377, 715
BsrFI RCCGGY 1 cut(s) 582
BsrGI TGTACA 1 cut(s) 728
BsrI ACTGG 2 cut(s) 261, 764
BssAI RCCGGY 1 cut(s) 582
BssMI GATC 2 cut(s) 457, 769
Bst2UI CCWGG 1 cut(s) 774
Bst4CI ACNGT 1 cut(s) 799
Bst6I CTCTTC 1 cut(s) 152
BstAPI GCANNNNNTGC 1 cut(s) 491
BstAUI TGTACA 1 cut(s) 728
BstC8I GCNNGC 2 cut(s) 14, 706
BstEII GGTNACC 1 cut(s) 762
BstF5I GGATG 2 cut(s) 184, 220
BstHHI GCGC 1 cut(s) 197
BstKTI GATC 2 cut(s) 460, 772
BstMAI GTCTC 4 cut(s) 9, 491, 591, 656
BstMBI GATC 2 cut(s) 457, 769
BstMWI GCNNNNNNNGC 4 cut(s) 22, 419, 491, 527
BstNI CCWGG 1 cut(s) 774
BstNSI RCATGY 2 cut(s) 413, 555
BstPI GGTNACC 1 cut(s) 762
BstSCI CCNGG 1 cut(s) 772
BstSLI GKGCMC 1 cut(s) 233
BstV2I GAAGAC 2 cut(s) 446, 564
BstX2I RGATCY 1 cut(s) 457
BstYI RGATCY 1 cut(s) 457
BsuI GTATCC 1 cut(s) 341
BsuRI GGCC 3 cut(s) 53, 231, 748
BtsCI GGATG 2 cut(s) 184, 220
BtsI GCAGTG 2 cut(s) 45, 397
BtsIMutI CAGTG 3 cut(s) 45, 397, 757
Cac8I GCNNGC 2 cut(s) 14, 706
CfoI GCGC 1 cut(s) 197
Cfr10I RCCGGY 1 cut(s) 582
Cfr13I GGNCC 3 cut(s) 229, 230, 535
Csp6I GTAC 1 cut(s) 729
CspAI ACCGGT 1 cut(s) 582
CviAII CATG 5 cut(s) 284, 410, 424, 482, 552
CviJI RGCY 9 cut(s) 53, 73, 98, 231, 521, 655, 704, 748, 777
CviKI_1 RGCY 9 cut(s) 53, 73, 98, 231, 521, 655, 704, 748, 777
CviQI GTAC 1 cut(s) 729
DpnI GATC 2 cut(s) 459, 771
DpnII GATC 2 cut(s) 457, 769
DraIII CACNNNGTG 1 cut(s) 491
EaeI YGGCCR 1 cut(s) 746
Eam1104I CTCTTC 1 cut(s) 152
EarI CTCTTC 1 cut(s) 152
Eco147I AGGCCT 1 cut(s) 53
Eco24I GRGCYC 1 cut(s) 233
Eco31I GGTCTC 1 cut(s) 591
Eco47I GGWCC 1 cut(s) 535
Eco57I CTGAAG 1 cut(s) 602
Eco91I GGTNACC 1 cut(s) 762
EcoO109I RGGNCCY 2 cut(s) 229, 230
EcoO65I GGTNACC 1 cut(s) 762
EcoRII CCWGG 1 cut(s) 772
EcoT22I ATGCAT 1 cut(s) 429
EcoT38I GRGCYC 1 cut(s) 233
Esp3I CGTCTC 1 cut(s) 656
FaeI CATG 5 cut(s) 287, 413, 427, 485, 555
FaiI YATR 9 cut(s) 108, 171, 285, 411, 425, 429, 483, 553, 564
FalI AAGNNNNNCTT 2 cut(s) 639, 671
FaqI GGGAC 1 cut(s) 706
FatI CATG 5 cut(s) 283, 409, 423, 481, 551
FokI GGATG 2 cut(s) 191, 227
FriOI GRGCYC 1 cut(s) 233
FspBI CTAG 2 cut(s) 489, 705
GlaI GCGC 1 cut(s) 196
GsuI CTGGAG 2 cut(s) 59, 278
HaeIII GGCC 3 cut(s) 53, 231, 748
HapII CCGG 1 cut(s) 583
HhaI GCGC 1 cut(s) 197
Hin1II CATG 5 cut(s) 287, 413, 427, 485, 555
Hin6I GCGC 1 cut(s) 195
HinP1I GCGC 1 cut(s) 195
HincII GTYRAC 1 cut(s) 549
HindII GTYRAC 1 cut(s) 549
HinfI GANTC 3 cut(s) 245, 401, 696
HpaII CCGG 1 cut(s) 583
HphI GGTGA 1 cut(s) 653
Hpy166II GTNNAC 2 cut(s) 549, 575
Hpy188I TCNGA 6 cut(s) 304, 325, 535, 591, 621, 738
Hpy188III TCNNGA 1 cut(s) 76
Hpy8I GTNNAC 2 cut(s) 549, 575
Hpy99I CGWCG 1 cut(s) 635
HpyAV CCTTC 4 cut(s) 28, 36, 127, 142
HpyCH4III ACNGT 1 cut(s) 799
HpyCH4IV ACGT 2 cut(s) 682, 740
HpyCH4V TGCA 6 cut(s) 218, 390, 427, 485, 494, 580
HpyF10VI GCNNNNNNNGC 4 cut(s) 22, 419, 491, 527
HpySE526I ACGT 2 cut(s) 682, 740
Hsp92II CATG 5 cut(s) 287, 413, 427, 485, 555
HspAI GCGC 1 cut(s) 195
Kzo9I GATC 2 cut(s) 457, 769
LmnI GCTCC 1 cut(s) 78
LpnPI CCDG 9 cut(s) 89, 242, 420, 596, 656, 745, 759, 780, 786
LweI GCATC 1 cut(s) 205
MaeI CTAG 2 cut(s) 489, 705
MaeII ACGT 2 cut(s) 682, 740
MaeIII GTNAC 2 cut(s) 266, 762
MalI GATC 2 cut(s) 459, 771
MboI GATC 2 cut(s) 457, 769
MflI RGATCY 1 cut(s) 457
MhlI GDGCHC 1 cut(s) 233
MlsI TGGCCA 1 cut(s) 748
MluCI AATT 5 cut(s) 83, 287, 474, 509, 598
MluNI TGGCCA 1 cut(s) 748
MlyI GAGTC 1 cut(s) 410
Mox20I TGGCCA 1 cut(s) 748
Mph1103I ATGCAT 1 cut(s) 429
MroXI GAANNNNTTC 1 cut(s) 477
MscI TGGCCA 1 cut(s) 748
MseI TTAA 2 cut(s) 69, 372
Msp20I TGGCCA 1 cut(s) 748
MspI CCGG 1 cut(s) 583
MspR9I CCNGG 1 cut(s) 774
MvaI CCWGG 1 cut(s) 774
MwoI GCNNNNNNNGC 4 cut(s) 22, 419, 491, 527
NdeII GATC 2 cut(s) 457, 769
NheI GCTAGC 1 cut(s) 704
NlaIII CATG 5 cut(s) 287, 413, 427, 485, 555
NlaIV GGNNCC 2 cut(s) 230, 231
NmuCI GTSAC 1 cut(s) 266
NsiI ATGCAT 1 cut(s) 429
NspI RCATGY 2 cut(s) 413, 555
PceI AGGCCT 1 cut(s) 53
PciI ACATGT 1 cut(s) 551
PdmI GAANNNNTTC 1 cut(s) 477
PfeI GAWTC 2 cut(s) 245, 696
PinAI ACCGGT 1 cut(s) 582
PleI GAGTC 1 cut(s) 409
PpsI GAGTC 1 cut(s) 409
PscI ACATGT 1 cut(s) 551
Psp6I CCWGG 1 cut(s) 772
PspEI GGTNACC 1 cut(s) 762
PspGI CCWGG 1 cut(s) 772
PspN4I GGNNCC 2 cut(s) 230, 231
PspOMI GGGCCC 1 cut(s) 229
PspPI GGNCC 3 cut(s) 229, 230, 535
PsrI GAACNNNNNNTAC 2 cut(s) 273, 305
PsuI RGATCY 1 cut(s) 457
RsaI GTAC 1 cut(s) 730
RsaNI GTAC 1 cut(s) 729
SaqAI TTAA 2 cut(s) 69, 372
Sau3AI GATC 2 cut(s) 457, 769
Sau96I GGNCC 3 cut(s) 229, 230, 535
SchI GAGTC 1 cut(s) 410
ScrFI CCNGG 1 cut(s) 774
SduI GDGCHC 1 cut(s) 233
SfaNI GCATC 1 cut(s) 205
SinI GGWCC 1 cut(s) 535
SmlI CTYRAG 1 cut(s) 234
SmoI CTYRAG 1 cut(s) 234
Sse9I AATT 5 cut(s) 83, 287, 474, 509, 598
SseBI AGGCCT 1 cut(s) 53
SsiI CCGC 1 cut(s) 783
SspMI CTAG 2 cut(s) 489, 705
StuI AGGCCT 1 cut(s) 53
StyD4I CCNGG 1 cut(s) 772
TaaI ACNGT 1 cut(s) 799
TaiI ACGT 2 cut(s) 685, 743
TaqI TCGA 1 cut(s) 60
TasI AATT 5 cut(s) 83, 287, 474, 509, 598
TatI WGTACW 1 cut(s) 728
TfiI GAWTC 2 cut(s) 245, 696
Tru1I TTAA 2 cut(s) 69, 372
Tru9I TTAA 2 cut(s) 69, 372
TscAI CASTG 3 cut(s) 45, 397, 764
TseFI GTSAC 1 cut(s) 266
Tsp45I GTSAC 1 cut(s) 266
TspDTI ATGAA 3 cut(s) 300, 470, 660
TspGWI ACGGA 2 cut(s) 19, 581
TspRI CASTG 3 cut(s) 45, 397, 764
VpaK11BI GGWCC 1 cut(s) 535
XapI RAATTY 1 cut(s) 509
XceI RCATGY 2 cut(s) 413, 555
XcmI CCANNNNNNNNNTGG 1 cut(s) 756
XmnI GAANNNNTTC 1 cut(s) 477
XspI CTAG 2 cut(s) 489, 705
Zsp2I ATGCAT 1 cut(s) 429
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.