Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000006

Orthogroup ID

OG0005680

Physical Location & Seq

Genomic Coordinates Reverse (-)

35675932 .. 35676438

Gene Structure 507 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_6G00413280.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 507 bp

ATGATGACGATGAAACATGAAGAAGCTTGGAACCACAATGCCCAAATTGGAACCACAATGAAACCGATACTGAAACTGAAACTGAAACTGAAACTGAAACAAAGATTGCAGACCGGCCAAGACGCCCACTTCATCTGCGCACAACAAGGCACCGAGAAAATCGAAGTGAAGTCGTCGCCAAAAGGTGATGGGGGTACCTCAGCCGGAGTTGGGGACCAGATTCAGAGGCAAGCTGATGCACCAGCTTCTGAAACTCCGATCAAGAACTTTGATCAGCTTCCACCTCTGATCCTAACTCAATCGATGTTCAACGATTCTGGTGATGAAGAATGGCTCTTTGAGAAGCAGAATCAGCAAACTGGACATGAATCTACATCTTCTAAAAGATTTAAAACTAACCTCGATGAGGCCAAGCCCGGTTCTGCAAGTCGGACTTTGTGGCCACCAAAAGCACACTGGTTGCCTCAGGCTGGCATATATGCGTCACCCTTCACTGTTCCACTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

168

Amino Acids

18.67

Weight (kDa)

8.65

Isoelectric Point (pI)

46.31

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005680)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G20100 AT1G20100 AT1G75860 AT1G75860 AT1G76230
fragaria_vesca	FvH4_2g38160 FvH4_2g38160 FvH4_6g14711
prunus_persica	Prupe.1G362500_v2.0.a1 Prupe.1G362800_v2.0.a1 Prupe.1G362800_v2.0.a1 Prupe.1G362800_v2.0.a1
pyrus_communis	pycom15g00820
rosa_chinensis	RchiOBHm_Chr6g0303321
rosa_laevigata	RLG00000011092 RLG00000024466
rosa_multiflora	Rmu_sc0007252.1_g000006 Rmu_sc0027227.1_g000002
rosa_roxburghii	Rroxscaffold_6G00413280 Rroxscaffold_7G00164870
rosa_rugosa	Rorug06G0320400 Rorug06G0320500
rosa_samantha	Rh6AG434800 Rh6BG468300 Rh6CG446800 Rh6DG433600 Rh6DG433700
rosa_wichuraiana	Rw6G037650

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	139
Acc65I	GGTACC	1 cut(s)	194
AccB1I	GGYRCC	2 cut(s)	149, 194
AclWI	GGATC	1 cut(s)	283
AcoI	YGGCCR	2 cut(s)	115, 440
AcyI	GRCGYC	1 cut(s)	123
AfaI	GTAC	1 cut(s)	196
AfiI	CCNNNNNNNGG	3 cut(s)	210, 406, 470
AgsI	TTSAA	1 cut(s)	310
AluBI	AGCT	4 cut(s)	26, 233, 245, 277
AluI	AGCT	4 cut(s)	26, 233, 245, 277
AlwI	GGATC	1 cut(s)	283
AlwNI	CAGNNNCTG	1 cut(s)	248
AoxI	GGCC	3 cut(s)	115, 408, 440
Asp718I	GGTACC	1 cut(s)	194
AspLEI	GCGC	1 cut(s)	140
AspS9I	GGNCC	1 cut(s)	214
AsuC2I	CCSGG	1 cut(s)	417
AsuHPI	GGTGA	3 cut(s)	197, 332, 477
AvaII	GGWCC	1 cut(s)	214
AxyI	CCTNAGG	1 cut(s)	465
BalI	TGGCCA	1 cut(s)	442
BanI	GGYRCC	2 cut(s)	149, 194
BbvCI	CCTCAGC	1 cut(s)	199
BccI	CCATC	1 cut(s)	182
BclI	TGATCA	1 cut(s)	271
BcnI	CCSGG	1 cut(s)	417
Bme1390I	CCNGG	1 cut(s)	417
Bme18I	GGWCC	1 cut(s)	214
BmgT120I	GGNCC	1 cut(s)	214
BmiI	GGNNCC	5 cut(s)	32, 52, 151, 196, 215
BmrFI	CCNGG	1 cut(s)	417
BmsI	GCATC	1 cut(s)	226
Bpu10I	CCTNAGC	1 cut(s)	199
BpuMI	CCSGG	1 cut(s)	417
Bsa29I	ATCGAT	1 cut(s)	302
BsaHI	GRCGYC	1 cut(s)	123
Bsc4I	CCNNNNNNNGG	3 cut(s)	210, 406, 470
Bse118I	RCCGGY	1 cut(s)	113
Bse1I	ACTGG	2 cut(s)	364, 461
Bse21I	CCTNAGG	1 cut(s)	465
BseCI	ATCGAT	1 cut(s)	302
BseLI	CCNNNNNNNGG	3 cut(s)	210, 406, 470
BseMII	CTCAG	2 cut(s)	213, 479
BseNI	ACTGG	2 cut(s)	364, 461
BshFI	GGCC	3 cut(s)	117, 410, 442
BshNI	GGYRCC	2 cut(s)	149, 194
BshVI	ATCGAT	1 cut(s)	302
BsiSI	CCGG	3 cut(s)	114, 204, 417
BslFI	GGGAC	1 cut(s)	227
BslI	CCNNNNNNNGG	3 cut(s)	210, 406, 470
BsmFI	GGGAC	1 cut(s)	227
BsnI	GGCC	3 cut(s)	117, 410, 442
Bsp143I	GATC	3 cut(s)	258, 271, 288
BspANI	GGCC	3 cut(s)	117, 410, 442
BspCNI	CTCAG	2 cut(s)	212, 478
BspDI	ATCGAT	1 cut(s)	302
BspLI	GGNNCC	5 cut(s)	32, 52, 151, 196, 215
BspPI	GGATC	1 cut(s)	283
BspT107I	GGYRCC	2 cut(s)	149, 194
BsrFI	RCCGGY	1 cut(s)	113
BsrI	ACTGG	2 cut(s)	364, 461
BssAI	RCCGGY	1 cut(s)	113
BssMI	GATC	3 cut(s)	258, 271, 288
BssNI	GRCGYC	1 cut(s)	123
Bst4CI	ACNGT	1 cut(s)	496
BstACI	GRCGYC	1 cut(s)	123
BstC8I	GCNNGC	2 cut(s)	231, 472
BstDEI	CTNAG	2 cut(s)	199, 465
BstENI	CCTNNNNNAGG	1 cut(s)	404
BstHHI	GCGC	1 cut(s)	140
BstKTI	GATC	3 cut(s)	261, 274, 291
BstMBI	GATC	3 cut(s)	258, 271, 288
BstMWI	GCNNNNNNNGC	1 cut(s)	352
BstSCI	CCNGG	1 cut(s)	415
Bsu15I	ATCGAT	1 cut(s)	302
Bsu36I	CCTNAGG	1 cut(s)	465
BsuRI	GGCC	3 cut(s)	117, 410, 442
BsuTUI	ATCGAT	1 cut(s)	302
BtsIMutI	CAGTG	2 cut(s)	454, 492
Cac8I	GCNNGC	2 cut(s)	231, 472
CaiI	CAGNNNCTG	1 cut(s)	248
CfoI	GCGC	1 cut(s)	140
Cfr10I	RCCGGY	1 cut(s)	113
Cfr13I	GGNCC	1 cut(s)	214
ClaI	ATCGAT	1 cut(s)	302
CseI	GACGC	2 cut(s)	131, 471
Csp6I	GTAC	1 cut(s)	195
CviAII	CATG	2 cut(s)	17, 365
CviQI	GTAC	1 cut(s)	195
DdeI	CTNAG	2 cut(s)	199, 465
DpnI	GATC	3 cut(s)	260, 273, 290
DpnII	GATC	3 cut(s)	258, 271, 288
DraI	TTTAAA	1 cut(s)	391
EaeI	YGGCCR	2 cut(s)	115, 440
Eco47I	GGWCC	1 cut(s)	214
Eco81I	CCTNAGG	1 cut(s)	465
EcoNI	CCTNNNNNAGG	1 cut(s)	404
FaeI	CATG	2 cut(s)	20, 368
FaiI	YATR	5 cut(s)	18, 366, 476, 478, 480
FalI	AAGNNNNNCTT	2 cut(s)	418, 450
FaqI	GGGAC	1 cut(s)	227
FatI	CATG	2 cut(s)	16, 364
FbaI	TGATCA	1 cut(s)	271
FspI	TGCGCA	1 cut(s)	139
GlaI	GCGC	1 cut(s)	139
HaeIII	GGCC	3 cut(s)	117, 410, 442
HapII	CCGG	3 cut(s)	114, 204, 417
HgaI	GACGC	2 cut(s)	131, 471
HhaI	GCGC	1 cut(s)	140
Hin1I	GRCGYC	1 cut(s)	123
Hin1II	CATG	2 cut(s)	20, 368
Hin6I	GCGC	1 cut(s)	138
HinP1I	GCGC	1 cut(s)	138
HindIII	AAGCTT	1 cut(s)	24
HinfI	GANTC	4 cut(s)	220, 314, 349, 368
HpaII	CCGG	3 cut(s)	114, 204, 417
HphI	GGTGA	3 cut(s)	197, 332, 477
Hpy188I	TCNGA	5 cut(s)	225, 250, 258, 288, 432
Hpy188III	TCNNGA	1 cut(s)	262
Hpy99I	CGWCG	1 cut(s)	178
HpyAV	CCTTC	1 cut(s)	499
HpyCH4III	ACNGT	1 cut(s)	496
HpyCH4V	TGCA	3 cut(s)	109, 239, 425
HpyF10VI	GCNNNNNNNGC	1 cut(s)	352
HpyF3I	CTNAG	2 cut(s)	199, 465
Hsp92I	GRCGYC	1 cut(s)	123
Hsp92II	CATG	2 cut(s)	20, 368
HspAI	GCGC	1 cut(s)	138
KpnI	GGTACC	1 cut(s)	198
Ksp22I	TGATCA	1 cut(s)	271
Kzo9I	GATC	3 cut(s)	258, 271, 288
LweI	GCATC	1 cut(s)	226
MaeIII	GTNAC	1 cut(s)	483
MalI	GATC	3 cut(s)	260, 273, 290
MboI	GATC	3 cut(s)	258, 271, 288
MboII	GAAGA	3 cut(s)	32, 338, 369
MlsI	TGGCCA	1 cut(s)	442
MluCI	AATT	1 cut(s)	45
MluNI	TGGCCA	1 cut(s)	442
MmeI	TCCRAC	1 cut(s)	410
MnlI	CCTC	6 cut(s)	208, 219, 294, 400, 410, 474
Mox20I	TGGCCA	1 cut(s)	442
MscI	TGGCCA	1 cut(s)	442
MseI	TTAA	1 cut(s)	390
Msp20I	TGGCCA	1 cut(s)	442
MspI	CCGG	3 cut(s)	114, 204, 417
MspR9I	CCNGG	1 cut(s)	417
MwoI	GCNNNNNNNGC	1 cut(s)	352
NciI	CCSGG	1 cut(s)	417
NdeII	GATC	3 cut(s)	258, 271, 288
NlaIII	CATG	2 cut(s)	20, 368
NlaIV	GGNNCC	5 cut(s)	32, 52, 151, 196, 215
NmuCI	GTSAC	1 cut(s)	483
NsbI	TGCGCA	1 cut(s)	139
PfeI	GAWTC	4 cut(s)	220, 314, 349, 368
PspN4I	GGNNCC	5 cut(s)	32, 52, 151, 196, 215
PspPI	GGNCC	1 cut(s)	214
PstNI	CAGNNNCTG	1 cut(s)	248
RsaI	GTAC	1 cut(s)	196
RsaNI	GTAC	1 cut(s)	195
SaqAI	TTAA	1 cut(s)	390
Sau3AI	GATC	3 cut(s)	258, 271, 288
Sau96I	GGNCC	1 cut(s)	214
ScrFI	CCNGG	1 cut(s)	417
SetI	ASST	8 cut(s)	28, 187, 200, 235, 247, 279, 286, 402
SfaNI	GCATC	1 cut(s)	226
SinI	GGWCC	1 cut(s)	214
Sse9I	AATT	1 cut(s)	45
StyD4I	CCNGG	1 cut(s)	415
TaaI	ACNGT	1 cut(s)	496
TaqI	TCGA	3 cut(s)	162, 302, 402
TasI	AATT	1 cut(s)	45
TfiI	GAWTC	4 cut(s)	220, 314, 349, 368
Tru1I	TTAA	1 cut(s)	390
Tru9I	TTAA	1 cut(s)	390
TscAI	CASTG	2 cut(s)	461, 499
TseFI	GTSAC	1 cut(s)	483
Tsp45I	GTSAC	1 cut(s)	483
TspDTI	ATGAA	6 cut(s)	26, 33, 74, 121, 339, 381
TspRI	CASTG	2 cut(s)	461, 499
VpaK11BI	GGWCC	1 cut(s)	214
XagI	CCTNNNNNAGG	1 cut(s)	404
XcmI	CCANNNNNNNNNTGG	1 cut(s)	453

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.