Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0002598

Physical Location & Seq

Genomic Coordinates Reverse (-)

7938195 .. 7940805

Gene Structure 2611 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G22490.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 915 bp

ATGCCCTTAGAGGCTGTCGTATACCCGCAAGATCCATTCGGATATCTCTCCAATTGCAAAGATTTTATGTTCCACGACTTATACTCTCAAGAAGAGTTCGTAGCTCAAGATACGAAGAACAACATTGATAAGTTAGGGCATGAACAGAGCTTTGTGGAACAAGGTAAGGAGGACGATCATCAATGGCGAGACTATCATCAGTATCCTTTGTTGATCCCTTCGTTGGGAGAAGAGCTTGGTCTTACCGCCATTGATGTGGAGAGTCATCCTCCTCCACAGCACCGGAGGAAGAGGAGGAGAACGAGAAACTGCAAGAACAAGGAAGAGATCGAGAACCAGAGAATGACTCACATCGCCGTCGAGAGAAATCGCCGGAAACAGATGAACGAGTATCTGGCTGTGCTCCGTTCTCTAATGCCGTCGTCGTATGCTCAAAGAGGAGATCAAGCGTCGATAGTAGGAGGAGCTATAAACTACGTGAAGGAGTTAGAGCATATTTTACAATCTATGGAGCCGAAGAGAACTAGGACTCATGATCCCAAAGGAGACAAGACTAGCACTAGCTCGTTAGTGGGTCCATTCACAGATTTTTTCAGCTTCCCACAATATTCTACAAAGTCATCATCAGATGTACCGGAAAGCTCATCTTCACCGGCGGAGATAGAGGTTACGGTGGCAGAAAGCCATGCGAACATCAAGATAATGACGAAGAAGAAACCGAGGCAGCTTCTTAAGCTCATAACTTCTTTACAAAGCCTAAGGCTCACTCTTCTTCATCTCAATGTCACCACTCTCCACAACTCCATTCTCTACTCCATCAGCGTCAGGGTTGAAGAAGGAAGCCAACTGAATACCGTGGACGACATTGCAACAGCTTTGAATCAAACCATAAGGAGGATTCAAGAAGAGACATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HLH

Protein Analysis

304

Amino Acids

34.89

Weight (kDa)

6.47

Isoelectric Point (pI)

69.25

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HLH	PF00010	113 - 164	7e-14	Helix-loop-helix DNA-binding domain
bHLH-TF_ACT-like_plant	PF22754	220 - 297	8e-06	Plant bHLH transcription factor, ACT-like domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002598)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G22490 AT1G22490 AT1G72210 AT1G72210
fragaria_vesca	FvH4_5g36240 FvH4_5g36240 FvH4_6g05440 FvH4_6g05440
malus_domestica	MD04G1208700.v1.1 MD08G1190500.v1.1 MD12G1223000.v1.1 MD15G1377800.v1.1
prunus_persica	Prupe.1G524500_v2.0.a1 Prupe.1G524500_v2.0.a1 Prupe.6G329600_v2.0.a1 Prupe.6G329600_v2.0.a1
pyrus_communis	pycom04g18480 pycom08g16370 pycom12g20890 pycom15g33850
rosa_chinensis	RchiOBHm_Chr3g0454211 RchiOBHm_Chr7g0238141
rosa_laevigata	RLG00000000939 RLG00000025476
rosa_multiflora	Rmu_sc0007628.1_g000004
rosa_roxburghii	Rroxscaffold_165G00436990 Rroxscaffold_3G00223340 Rroxscaffold_6G00425370
rosa_rugosa	Rorug02G0653500 Rorug07G0310500
rosa_samantha	Rh3AG056600 Rh3BG058100 Rh3CG057300 Rh3DG058600 Rh7AG466000 Rh7BG436700 Rh7CG484000 Rh7DG452400
rosa_wichuraiana	Rw3G004360 Rw7G038590

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	21
AciI	CCGC	3 cut(s)	26, 246, 656
AclWI	GGATC	3 cut(s)	26, 208, 530
AfaI	GTAC	1 cut(s)	633
AfiI	CCNNNNNNNGG	3 cut(s)	223, 224, 894
AflII	CTTAAG	1 cut(s)	731
AgsI	TTSAA	3 cut(s)	833, 880, 902
Alw21I	GWGCWC	1 cut(s)	405
Alw26I	GTCTC	3 cut(s)	183, 540, 902
AlwI	GGATC	3 cut(s)	26, 208, 530
ApeKI	GCWGC	1 cut(s)	724
AspS9I	GGNCC	1 cut(s)	575
AsuHPI	GGTGA	2 cut(s)	642, 778
AvaII	GGWCC	1 cut(s)	575
AxyI	CCTNAGG	1 cut(s)	758
Bbv12I	GWGCWC	1 cut(s)	405
BbvI	GCAGC	1 cut(s)	736
BccI	CCATC	1 cut(s)	824
BceAI	ACGGC	2 cut(s)	341, 403
BciVI	GTATCC	1 cut(s)	213
BcoDI	GTCTC	3 cut(s)	183, 540, 902
BfaI	CTAG	3 cut(s)	525, 555, 561
BfrI	CTTAAG	1 cut(s)	731
BfuI	GTATCC	1 cut(s)	213
BisI	GCNGC	1 cut(s)	725
BlsI	GCNGC	1 cut(s)	726
Bme18I	GGWCC	1 cut(s)	575
BmgT120I	GGNCC	1 cut(s)	575
BmiI	GGNNCC	2 cut(s)	513, 576
BplI	GAGNNNNNCTC	4 cut(s)	253, 285, 331, 363
BpuEI	CTTGAG	2 cut(s)	72, 90
BsaAI	YACGTR	1 cut(s)	478
BsaJI	CCNNGG	2 cut(s)	719, 855
BsaWI	WCCGGW	2 cut(s)	282, 634
Bsc4I	CCNNNNNNNGG	3 cut(s)	223, 224, 894
Bse118I	RCCGGY	1 cut(s)	652
Bse21I	CCTNAGG	1 cut(s)	758
Bse3DI	GCAATG	1 cut(s)	864
BseDI	CCNNGG	2 cut(s)	719, 855
BseGI	GGATG	1 cut(s)	265
BseLI	CCNNNNNNNGG	3 cut(s)	223, 224, 894
BseMI	GCAATG	1 cut(s)	864
BseRI	GAGGAG	5 cut(s)	261, 307, 310, 453, 477
BseXI	GCAGC	1 cut(s)	736
BsiHKAI	GWGCWC	1 cut(s)	405
BsiSI	CCGG	4 cut(s)	283, 373, 635, 653
BslI	CCNNNNNNNGG	3 cut(s)	223, 224, 894
BsmAI	GTCTC	3 cut(s)	183, 540, 902
Bsp1286I	GDGCHC	1 cut(s)	405
Bsp143I	GATC	6 cut(s)	31, 175, 213, 327, 442, 535
BspACI	CCGC	3 cut(s)	26, 246, 656
BspHI	TCATGA	1 cut(s)	532
BspLI	GGNNCC	2 cut(s)	513, 576
BspPI	GGATC	3 cut(s)	26, 208, 530
BspQI	GCTCTTC	1 cut(s)	225
BspTI	CTTAAG	1 cut(s)	731
BsrDI	GCAATG	1 cut(s)	864
BsrFI	RCCGGY	1 cut(s)	652
BssAI	RCCGGY	1 cut(s)	652
BssECI	CCNNGG	2 cut(s)	719, 855
BssMI	GATC	6 cut(s)	31, 175, 213, 327, 442, 535
BssNAI	GTATAC	1 cut(s)	22
Bst1107I	GTATAC	1 cut(s)	22
Bst4CI	ACNGT	2 cut(s)	673, 856
Bst6I	CTCTTC	7 cut(s)	87, 225, 284, 318, 512, 774, 900
BstAFI	CTTAAG	1 cut(s)	731
BstBAI	YACGTR	1 cut(s)	478
BstDEI	CTNAG	2 cut(s)	7, 758
BstDSI	CCRYGG	1 cut(s)	855
BstF5I	GGATG	1 cut(s)	265
BstKTI	GATC	6 cut(s)	34, 178, 216, 330, 445, 538
BstMAI	GTCTC	3 cut(s)	183, 540, 902
BstMBI	GATC	6 cut(s)	31, 175, 213, 327, 442, 535
BstMWI	GCNNNNNNNGC	1 cut(s)	733
BstV1I	GCAGC	1 cut(s)	736
BstX2I	RGATCY	1 cut(s)	31
BstXI	CCANNNNNNTGG	1 cut(s)	256
BstYI	RGATCY	1 cut(s)	31
BstZ17I	GTATAC	1 cut(s)	22
Bsu36I	CCTNAGG	1 cut(s)	758
BsuI	GTATCC	1 cut(s)	213
BtgI	CCRYGG	1 cut(s)	855
BtgZI	GCGATG	1 cut(s)	337
BtsCI	GGATG	1 cut(s)	265
CciI	TCATGA	1 cut(s)	532
Cfr10I	RCCGGY	1 cut(s)	652
Cfr13I	GGNCC	1 cut(s)	575
CseI	GACGC	2 cut(s)	438, 811
Csp6I	GTAC	1 cut(s)	632
CviAII	CATG	3 cut(s)	140, 533, 686
CviQI	GTAC	1 cut(s)	632
DdeI	CTNAG	2 cut(s)	7, 758
DpnI	GATC	6 cut(s)	33, 177, 215, 329, 444, 537
DpnII	GATC	6 cut(s)	31, 175, 213, 327, 442, 535
Eam1104I	CTCTTC	7 cut(s)	87, 225, 284, 318, 512, 774, 900
EarI	CTCTTC	7 cut(s)	87, 225, 284, 318, 512, 774, 900
EciI	GGCGGA	1 cut(s)	671
Eco32I	GATATC	1 cut(s)	44
Eco47I	GGWCC	1 cut(s)	575
Eco81I	CCTNAGG	1 cut(s)	758
EcoRV	GATATC	1 cut(s)	44
FaeI	CATG	3 cut(s)	143, 536, 689
FalI	AAGNNNNNCTT	2 cut(s)	631, 663
FatI	CATG	3 cut(s)	139, 532, 685
FauI	CCCGC	1 cut(s)	33
FblI	GTMKAC	1 cut(s)	21
Fnu4HI	GCNGC	1 cut(s)	725
FokI	GGATG	1 cut(s)	252
Fsp4HI	GCNGC	1 cut(s)	725
FspBI	CTAG	3 cut(s)	525, 555, 561
GluI	GCNGC	1 cut(s)	725
HapII	CCGG	4 cut(s)	283, 373, 635, 653
HgaI	GACGC	2 cut(s)	438, 811
Hin1II	CATG	3 cut(s)	143, 536, 689
HinfI	GANTC	5 cut(s)	262, 346, 529, 880, 898
HpaII	CCGG	4 cut(s)	283, 373, 635, 653
HphI	GGTGA	2 cut(s)	642, 778
Hpy166II	GTNNAC	2 cut(s)	22, 859
Hpy188I	TCNGA	2 cut(s)	41, 628
Hpy188III	TCNNGA	7 cut(s)	89, 107, 331, 361, 533, 697, 902
Hpy8I	GTNNAC	2 cut(s)	22, 859
Hpy99I	CGWCG	4 cut(s)	362, 424, 427, 454
HpyAV	CCTTC	3 cut(s)	228, 475, 830
HpyCH4III	ACNGT	2 cut(s)	673, 856
HpyCH4IV	ACGT	1 cut(s)	477
HpyCH4V	TGCA	3 cut(s)	57, 312, 869
HpyF10VI	GCNNNNNNNGC	1 cut(s)	733
HpyF3I	CTNAG	2 cut(s)	7, 758
HpySE526I	ACGT	1 cut(s)	477
Hsp92II	CATG	3 cut(s)	143, 536, 689
Kzo9I	GATC	6 cut(s)	31, 175, 213, 327, 442, 535
LguI	GCTCTTC	1 cut(s)	225
LmnI	GCTCC	3 cut(s)	408, 464, 511
LpnPI	CCDG	7 cut(s)	296, 350, 380, 386, 648, 666, 811
Lsp1109I	GCAGC	1 cut(s)	736
MaeI	CTAG	3 cut(s)	525, 555, 561
MaeII	ACGT	1 cut(s)	477
MaeIII	GTNAC	2 cut(s)	667, 784
MalI	GATC	6 cut(s)	33, 177, 215, 329, 444, 537
MboI	GATC	6 cut(s)	31, 175, 213, 327, 442, 535
MfeI	CAATTG	1 cut(s)	52
MflI	RGATCY	1 cut(s)	31
MhlI	GDGCHC	1 cut(s)	405
MluCI	AATT	1 cut(s)	52
MlyI	GAGTC	3 cut(s)	271, 340, 523
MseI	TTAA	1 cut(s)	732
MslI	CAYNNNNRTG	2 cut(s)	254, 780
MspCI	CTTAAG	1 cut(s)	731
MspI	CCGG	4 cut(s)	283, 373, 635, 653
MunI	CAATTG	1 cut(s)	52
MwoI	GCNNNNNNNGC	1 cut(s)	733
NdeII	GATC	6 cut(s)	31, 175, 213, 327, 442, 535
NlaIII	CATG	3 cut(s)	143, 536, 689
NlaIV	GGNNCC	2 cut(s)	513, 576
NmuCI	GTSAC	1 cut(s)	784
PagI	TCATGA	1 cut(s)	532
PciSI	GCTCTTC	1 cut(s)	225
PfeI	GAWTC	2 cut(s)	880, 898
PkrI	GCNGC	1 cut(s)	726
PleI	GAGTC	3 cut(s)	270, 340, 523
PpsI	GAGTC	3 cut(s)	270, 340, 523
Ppu21I	YACGTR	1 cut(s)	478
PspN4I	GGNNCC	2 cut(s)	513, 576
PspPI	GGNCC	1 cut(s)	575
PsuI	RGATCY	1 cut(s)	31
RsaI	GTAC	1 cut(s)	633
RsaNI	GTAC	1 cut(s)	632
RseI	CAYNNNNRTG	2 cut(s)	254, 780
SapI	GCTCTTC	1 cut(s)	225
SaqAI	TTAA	1 cut(s)	732
SatI	GCNGC	1 cut(s)	725
Sau3AI	GATC	6 cut(s)	31, 175, 213, 327, 442, 535
Sau96I	GGNCC	1 cut(s)	575
SchI	GAGTC	3 cut(s)	271, 340, 523
SduI	GDGCHC	1 cut(s)	405
SgrAI	CRCCGGYG	1 cut(s)	652
SinI	GGWCC	1 cut(s)	575
SmiMI	CAYNNNNRTG	2 cut(s)	254, 780
SmlI	CTYRAG	3 cut(s)	87, 105, 731
SmoI	CTYRAG	3 cut(s)	87, 105, 731
Sse9I	AATT	1 cut(s)	52
SsiI	CCGC	3 cut(s)	26, 246, 656
SspI	AATATT	1 cut(s)	608
SspMI	CTAG	3 cut(s)	525, 555, 561
TaaI	ACNGT	2 cut(s)	673, 856
TaiI	ACGT	1 cut(s)	480
TaqI	TCGA	3 cut(s)	330, 360, 452
TasI	AATT	1 cut(s)	52
TfiI	GAWTC	2 cut(s)	880, 898
Tru1I	TTAA	1 cut(s)	732
Tru9I	TTAA	1 cut(s)	732
TseFI	GTSAC	1 cut(s)	784
TseI	GCWGC	1 cut(s)	724
Tsp45I	GTSAC	1 cut(s)	784
TspDTI	ATGAA	3 cut(s)	156, 398, 764
TspGWI	ACGGA	1 cut(s)	395
Vha464I	CTTAAG	1 cut(s)	731
VpaK11BI	GGWCC	1 cut(s)	575
XmiI	GTMKAC	1 cut(s)	21
XspI	CTAG	3 cut(s)	525, 555, 561

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.