Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr04

Orthogroup ID

OG0002598

Physical Location & Seq

Genomic Coordinates Forward (+)

29367170 .. 29368977

Gene Structure 1808 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD04G1208700.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1113 bp

ATGAAGCCCTTTAAAAGCTCAGTTTCCCCAACCTTAAATAACTCACGAGTTGCATTTAAAAGCCAAAGTACTAACTACCAAGAGACACAGAGTGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGCTGGCACAGAGCAAATGGCTCTGGAAGCCGTCGTTTTCCCTCAAGATCCATTTAGTTGCACTAACAAAGACCTCTACAACTTGTTAGGAGGAAATTTGAGCTATGTCGATGATCAGCAGCAAGCCTCTCTTGATTTTCTCGGCTACCAAACAGACCAGAATTACCCTAACTATGATACTTATTCCTCACCGCCTTCAATGGTATCGCACTTCAACGAATTGCACCTCTCCAATCCAAACCCAGTTGCCAGCACTATAAACCCTGATGGTGATCAACCCGAATTTCAACTACCATTGGAGGACACAATCAACGTATCTAGCAGTACTCGTGCGAAACGACGTCGTGCCAAGAGTAAAAAGAACGAGGAGGAGATTGAGAACCAGAGAATGACTCACATTGCGGTTGAGCGCAACAGAAGAAAACAGATGAATGAGTATCTCTCCGTTCTTCGATCTATAATGCCCGAGTCGTACGTCCAAAGGGGTGATCAAGCATCAATCATTGGGGGTGCGATTAACTTTGTGAAGGAGCTAGAGCAAGAAGTGCAATTCCTTGGCGTTCAAAAGCCAAATAATTGTGCGCCTTTTTCCGAATTCTTTACCTTCCCACAGTACTCAACAAGGTCTACTAGTGATCATGAGTCAACGGTGGCCGCCATGGCGGAGCTGCCGCTGCTCGAGTGCAGGTCGAGCAATATCGCAGCTGACATAGAAGTGACAATGGTGGAGAGCCATGCAAGCCTCAAAGTAAGATCCAAAAGGCTCCCAAAGCAGCTCTTGAAAATTGTTTCTGGGTTGCATGATATGCACCTCACCGTTCTCCATCTCAATGTTGTCACCGCTGATGATATTGTGCTCTATTCTCTCAGCCTCAAGGTTGAAGATGAGTGCATGCTGACTTCAGTGGATGAAATTGCAACCGCAGTCCATGAGATGCTAGCTAGGATTCAAGAAGAAGCAATGCTGGACTTGAACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HLH

Protein Analysis

371

Amino Acids

42.03

Weight (kDa)

5.15

Isoelectric Point (pI)

58.27

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HLH	PF00010	173 - 224	7.6e-12	Helix-loop-helix DNA-binding domain
bHLH-TF_ACT-like_plant	PF22754	281 - 357	1e-05	Plant bHLH transcription factor, ACT-like domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002598)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G22490 AT1G22490 AT1G72210 AT1G72210
fragaria_vesca	FvH4_5g36240 FvH4_5g36240 FvH4_6g05440 FvH4_6g05440
malus_domestica	MD04G1208700.v1.1 MD08G1190500.v1.1 MD12G1223000.v1.1 MD15G1377800.v1.1
prunus_persica	Prupe.1G524500_v2.0.a1 Prupe.1G524500_v2.0.a1 Prupe.6G329600_v2.0.a1 Prupe.6G329600_v2.0.a1
pyrus_communis	pycom04g18480 pycom08g16370 pycom12g20890 pycom15g33850
rosa_chinensis	RchiOBHm_Chr3g0454211 RchiOBHm_Chr7g0238141
rosa_laevigata	RLG00000000939 RLG00000025476
rosa_multiflora	Rmu_sc0007628.1_g000004
rosa_roxburghii	Rroxscaffold_165G00436990 Rroxscaffold_3G00223340 Rroxscaffold_6G00425370
rosa_rugosa	Rorug02G0653500 Rorug07G0310500
rosa_samantha	Rh3AG056600 Rh3BG058100 Rh3CG057300 Rh3DG058600 Rh7AG466000 Rh7BG436700 Rh7CG484000 Rh7DG452400
rosa_wichuraiana	Rw3G004360 Rw7G038590

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	478
Acc36I	ACCTGC	1 cut(s)	810
AccI	GTMKAC	1 cut(s)	761
AciI	CCGC	7 cut(s)	326, 536, 789, 797, 806, 975, 1056
AclWI	GGATC	2 cut(s)	176, 882
AcoI	YGGCCR	1 cut(s)	786
AcsI	RAATTY	3 cut(s)	229, 416, 728
AcuI	CTGAAG	1 cut(s)	1020
AcyI	GRCGYC	1 cut(s)	475
AdeI	CACNNNGTG	1 cut(s)	92
AfaI	GTAC	4 cut(s)	70, 460, 608, 749
AgsI	TTSAA	8 cut(s)	333, 349, 422, 698, 916, 1016, 1085, 1108
AhlI	ACTAGT	1 cut(s)	764
AluBI	AGCT	8 cut(s)	18, 137, 237, 667, 802, 839, 910, 1076
AluI	AGCT	8 cut(s)	18, 137, 237, 667, 802, 839, 910, 1076
Alw21I	GWGCWC	1 cut(s)	993
Alw26I	GTCTC	1 cut(s)	77
AlwI	GGATC	2 cut(s)	176, 882
Ama87I	CYCGRG	2 cut(s)	599, 812
AoxI	GGCC	1 cut(s)	786
ApeKI	GCWGC	5 cut(s)	253, 802, 808, 836, 907
ApoI	RAATTY	3 cut(s)	229, 416, 728
AspLEI	GCGC	2 cut(s)	546, 718
AsuHPI	GGTGA	5 cut(s)	315, 416, 632, 940, 964
AsuNHI	GCTAGC	1 cut(s)	1072
AvaI	CYCGRG	2 cut(s)	599, 812
BauI	CACGAG	2 cut(s)	45, 462
Bbv12I	GWGCWC	1 cut(s)	993
BbvI	GCAGC	5 cut(s)	265, 789, 795, 848, 919
BccI	CCATC	2 cut(s)	395, 966
BceAI	ACGGC	1 cut(s)	149
BclI	TGATCA	4 cut(s)	247, 406, 622, 769
BcoDI	GTCTC	1 cut(s)	77
BcuI	ACTAGT	1 cut(s)	764
BfaI	CTAG	5 cut(s)	453, 668, 765, 1073, 1077
BfuAI	ACCTGC	1 cut(s)	810
BglI	GCCNNNNNGGC	1 cut(s)	794
BisI	GCNGC	7 cut(s)	254, 789, 803, 806, 809, 837, 908
BlsI	GCNGC	7 cut(s)	255, 790, 804, 807, 810, 838, 909
BmcAI	AGTACT	3 cut(s)	70, 460, 749
BmeT110I	CYCGRG	2 cut(s)	599, 812
BmiI	GGNNCC	1 cut(s)	899
BmrI	ACTGGG	1 cut(s)	371
BmsI	GCATC	2 cut(s)	638, 1059
BmtI	GCTAGC	1 cut(s)	1076
BmuI	ACTGGG	1 cut(s)	371
BplI	GAGNNNNNCTC	4 cut(s)	511, 543, 560, 592
BpuEI	CTTGAG	2 cut(s)	162, 992
BsaBI	GATNNNNATC	1 cut(s)	405
BsaHI	GRCGYC	1 cut(s)	475
BsaJI	CCNNGG	2 cut(s)	688, 792
Bse1I	ACTGG	1 cut(s)	377
Bse3DI	GCAATG	2 cut(s)	531, 1101
Bse8I	GATNNNNATC	1 cut(s)	405
BseDI	CCNNGG	2 cut(s)	688, 792
BseGI	GGATG	1 cut(s)	1048
BseJI	GATNNNNATC	1 cut(s)	405
BseMI	GCAATG	2 cut(s)	531, 1101
BseMII	CTCAG	2 cut(s)	33, 1015
BseNI	ACTGG	1 cut(s)	377
BseRI	GAGGAG	2 cut(s)	515, 518
BseXI	GCAGC	5 cut(s)	265, 789, 795, 848, 919
BsgI	GTGCAG	1 cut(s)	838
BshFI	GGCC	1 cut(s)	788
BsiHKAI	GWGCWC	1 cut(s)	993
BsiHKCI	CYCGRG	2 cut(s)	599, 812
BsiWI	CGTACG	1 cut(s)	606
BsmAI	GTCTC	1 cut(s)	77
BsnI	GGCC	1 cut(s)	788
BsoBI	CYCGRG	2 cut(s)	599, 812
Bsp1286I	GDGCHC	1 cut(s)	993
Bsp143I	GATC	7 cut(s)	181, 247, 406, 587, 622, 769, 887
Bsp19I	CCATGG	1 cut(s)	792
BspACI	CCGC	7 cut(s)	326, 536, 789, 797, 806, 975, 1056
BspANI	GGCC	1 cut(s)	788
BspCNI	CTCAG	2 cut(s)	32, 1014
BspHI	TCATGA	1 cut(s)	772
BspLI	GGNNCC	1 cut(s)	899
BspMI	ACCTGC	1 cut(s)	810
BspOI	GCTAGC	1 cut(s)	1076
BspPI	GGATC	2 cut(s)	176, 882
BsrDI	GCAATG	2 cut(s)	531, 1101
BsrI	ACTGG	1 cut(s)	377
BssECI	CCNNGG	2 cut(s)	688, 792
BssMI	GATC	7 cut(s)	181, 247, 406, 587, 622, 769, 887
BssNI	GRCGYC	1 cut(s)	475
BssSI	CACGAG	2 cut(s)	45, 462
BssT1I	CCWWGG	2 cut(s)	688, 792
Bst2BI	CACGAG	2 cut(s)	45, 462
Bst4CI	ACNGT	3 cut(s)	747, 784, 952
BstACI	GRCGYC	1 cut(s)	475
BstAPI	GCANNNNNTGC	2 cut(s)	679, 940
BstC8I	GCNNGC	6 cut(s)	139, 258, 385, 874, 1028, 1074
BstDEI	CTNAG	2 cut(s)	19, 1001
BstDSI	CCRYGG	1 cut(s)	792
BstF5I	GGATG	1 cut(s)	1048
BstHHI	GCGC	2 cut(s)	546, 718
BstKTI	GATC	7 cut(s)	184, 250, 409, 590, 625, 772, 890
BstMAI	GTCTC	1 cut(s)	77
BstMBI	GATC	7 cut(s)	181, 247, 406, 587, 622, 769, 887
BstMWI	GCNNNNNNNGC	8 cut(s)	161, 679, 794, 808, 825, 873, 904, 940
BstNSI	RCATGY	1 cut(s)	1030
BstV1I	GCAGC	5 cut(s)	265, 789, 795, 848, 919
BstX2I	RGATCY	2 cut(s)	181, 887
BstYI	RGATCY	2 cut(s)	181, 887
BsuRI	GGCC	1 cut(s)	788
BtgI	CCRYGG	1 cut(s)	792
BtsCI	GGATG	1 cut(s)	1048
BtsIMutI	CAGTG	1 cut(s)	1044
BveI	ACCTGC	1 cut(s)	810
Cac8I	GCNNGC	6 cut(s)	139, 258, 385, 874, 1028, 1074
CciI	TCATGA	1 cut(s)	772
CfoI	GCGC	2 cut(s)	546, 718
Csp6I	GTAC	4 cut(s)	69, 459, 607, 748
CviAII	CATG	6 cut(s)	773, 793, 869, 935, 1027, 1064
CviQI	GTAC	4 cut(s)	69, 459, 607, 748
DdeI	CTNAG	2 cut(s)	19, 1001
DpnI	GATC	7 cut(s)	183, 249, 408, 589, 624, 771, 889
DpnII	GATC	7 cut(s)	181, 247, 406, 587, 622, 769, 887
DraI	TTTAAA	2 cut(s)	13, 58
DraIII	CACNNNGTG	1 cut(s)	92
EaeI	YGGCCR	1 cut(s)	786
EciI	GGCGGA	1 cut(s)	812
Eco130I	CCWWGG	2 cut(s)	688, 792
Eco57I	CTGAAG	1 cut(s)	1020
Eco88I	CYCGRG	2 cut(s)	599, 812
EcoRI	GAATTC	1 cut(s)	728
EcoT14I	CCWWGG	2 cut(s)	688, 792
ErhI	CCWWGG	2 cut(s)	688, 792
FaeI	CATG	6 cut(s)	776, 796, 872, 938, 1030, 1067
FalI	AAGNNNNNCTT	4 cut(s)	249, 281, 896, 928
FatI	CATG	6 cut(s)	772, 792, 868, 934, 1026, 1063
FbaI	TGATCA	4 cut(s)	247, 406, 622, 769
FblI	GTMKAC	1 cut(s)	761
Fnu4HI	GCNGC	7 cut(s)	254, 789, 803, 806, 809, 837, 908
FokI	GGATG	1 cut(s)	1055
Fsp4HI	GCNGC	7 cut(s)	254, 789, 803, 806, 809, 837, 908
FspBI	CTAG	5 cut(s)	453, 668, 765, 1073, 1077
GlaI	GCGC	2 cut(s)	545, 717
GluI	GCNGC	7 cut(s)	254, 789, 803, 806, 809, 837, 908
HaeIII	GGCC	1 cut(s)	788
HhaI	GCGC	2 cut(s)	546, 718
Hin1I	GRCGYC	1 cut(s)	475
Hin1II	CATG	6 cut(s)	776, 796, 872, 938, 1030, 1067
Hin6I	GCGC	2 cut(s)	544, 716
HinP1I	GCGC	2 cut(s)	544, 716
HincII	GTYRAC	1 cut(s)	780
HindII	GTYRAC	1 cut(s)	780
HinfI	GANTC	4 cut(s)	526, 602, 776, 1081
HphI	GGTGA	5 cut(s)	315, 416, 632, 940, 964
Hpy166II	GTNNAC	2 cut(s)	762, 780
Hpy188I	TCNGA	1 cut(s)	727
Hpy188III	TCNNGA	7 cut(s)	45, 158, 179, 266, 773, 913, 1085
Hpy8I	GTNNAC	2 cut(s)	762, 780
Hpy99I	CGWCG	3 cut(s)	170, 477, 480
HpyAV	CCTTC	3 cut(s)	339, 655, 748
HpyCH4III	ACNGT	3 cut(s)	747, 784, 952
HpyCH4IV	ACGT	3 cut(s)	447, 475, 609
HpyF10VI	GCNNNNNNNGC	8 cut(s)	161, 679, 794, 808, 825, 873, 904, 940
HpyF3I	CTNAG	2 cut(s)	19, 1001
HpySE526I	ACGT	3 cut(s)	447, 475, 609
Hsp92I	GRCGYC	1 cut(s)	475
Hsp92II	CATG	6 cut(s)	776, 796, 872, 938, 1030, 1067
HspAI	GCGC	2 cut(s)	544, 716
Ksp22I	TGATCA	4 cut(s)	247, 406, 622, 769
Kzo9I	GATC	7 cut(s)	181, 247, 406, 587, 622, 769, 887
LmnI	GCTCC	3 cut(s)	664, 799, 903
Lsp1109I	GCAGC	5 cut(s)	265, 789, 795, 848, 919
LweI	GCATC	2 cut(s)	638, 1059
MaeI	CTAG	5 cut(s)	453, 668, 765, 1073, 1077
MaeII	ACGT	3 cut(s)	447, 475, 609
MaeIII	GTNAC	2 cut(s)	850, 970
MalI	GATC	7 cut(s)	183, 249, 408, 589, 624, 771, 889
MboI	GATC	7 cut(s)	181, 247, 406, 587, 622, 769, 887
MboII	GAAGA	4 cut(s)	564, 575, 1028, 1100
MflI	RGATCY	2 cut(s)	181, 887
MhlI	GDGCHC	1 cut(s)	993
MluCI	AATT	9 cut(s)	229, 295, 353, 416, 683, 709, 728, 918, 1047
MlyI	GAGTC	3 cut(s)	520, 611, 785
MseI	TTAA	4 cut(s)	12, 35, 57, 651
MslI	CAYNNNNRTG	2 cut(s)	848, 963
MspA1I	CMGCKG	3 cut(s)	808, 839, 977
MwoI	GCNNNNNNNGC	8 cut(s)	161, 679, 794, 808, 825, 873, 904, 940
NcoI	CCATGG	1 cut(s)	792
NdeII	GATC	7 cut(s)	181, 247, 406, 587, 622, 769, 887
NheI	GCTAGC	1 cut(s)	1072
NlaIII	CATG	6 cut(s)	776, 796, 872, 938, 1030, 1067
NlaIV	GGNNCC	1 cut(s)	899
NmeAIII	GCCGAG	1 cut(s)	255
NmuCI	GTSAC	2 cut(s)	850, 970
NspI	RCATGY	1 cut(s)	1030
PaeI	GCATGC	1 cut(s)	1030
PaeR7I	CTCGAG	1 cut(s)	812
PagI	TCATGA	1 cut(s)	772
PcsI	WCGNNNNNNNCGW	1 cut(s)	469
PfeI	GAWTC	1 cut(s)	1081
Pfl23II	CGTACG	1 cut(s)	606
PkrI	GCNGC	7 cut(s)	255, 790, 804, 807, 810, 838, 909
PleI	GAGTC	3 cut(s)	520, 610, 784
PpsI	GAGTC	3 cut(s)	520, 610, 784
PspLI	CGTACG	1 cut(s)	606
PspN4I	GGNNCC	1 cut(s)	899
PspXI	VCTCGAGB	1 cut(s)	812
PsuI	RGATCY	2 cut(s)	181, 887
PvuII	CAGCTG	1 cut(s)	839
RsaI	GTAC	4 cut(s)	70, 460, 608, 749
RsaNI	GTAC	4 cut(s)	69, 459, 607, 748
RseI	CAYNNNNRTG	2 cut(s)	848, 963
SaqAI	TTAA	4 cut(s)	12, 35, 57, 651
SatI	GCNGC	7 cut(s)	254, 789, 803, 806, 809, 837, 908
Sau3AI	GATC	7 cut(s)	181, 247, 406, 587, 622, 769, 887
ScaI	AGTACT	3 cut(s)	70, 460, 749
SchI	GAGTC	3 cut(s)	520, 611, 785
SduI	GDGCHC	1 cut(s)	993
SfaNI	GCATC	2 cut(s)	638, 1059
Sfr274I	CTCGAG	1 cut(s)	812
SlaI	CTCGAG	1 cut(s)	812
SmiMI	CAYNNNNRTG	2 cut(s)	848, 963
SmlI	CTYRAG	3 cut(s)	177, 812, 1007
SmoI	CTYRAG	3 cut(s)	177, 812, 1007
SpeI	ACTAGT	1 cut(s)	764
SphI	GCATGC	1 cut(s)	1030
Sse9I	AATT	9 cut(s)	229, 295, 353, 416, 683, 709, 728, 918, 1047
SsiI	CCGC	7 cut(s)	326, 536, 789, 797, 806, 975, 1056
SspMI	CTAG	5 cut(s)	453, 668, 765, 1073, 1077
StyI	CCWWGG	2 cut(s)	688, 792
TaaI	ACNGT	3 cut(s)	747, 784, 952
TaiI	ACGT	3 cut(s)	450, 478, 612
TaqI	TCGA	4 cut(s)	243, 586, 813, 824
TasI	AATT	9 cut(s)	229, 295, 353, 416, 683, 709, 728, 918, 1047
TatI	WGTACW	3 cut(s)	68, 458, 747
TauI	GCSGC	2 cut(s)	791, 808
TfiI	GAWTC	1 cut(s)	1081
Tru1I	TTAA	4 cut(s)	12, 35, 57, 651
Tru9I	TTAA	4 cut(s)	12, 35, 57, 651
TscAI	CASTG	1 cut(s)	1044
TseFI	GTSAC	2 cut(s)	850, 970
TseI	GCWGC	5 cut(s)	253, 802, 808, 836, 907
Tsp45I	GTSAC	2 cut(s)	850, 970
TspDTI	ATGAA	3 cut(s)	17, 578, 1059
TspGWI	ACGGA	1 cut(s)	568
TspRI	CASTG	1 cut(s)	1044
XapI	RAATTY	3 cut(s)	229, 416, 728
XceI	RCATGY	1 cut(s)	1030
XhoI	CTCGAG	1 cut(s)	812
XmiI	GTMKAC	1 cut(s)	761
XspI	CTAG	5 cut(s)	453, 668, 765, 1073, 1077
ZraI	GACGTC	1 cut(s)	476
ZrmI	AGTACT	3 cut(s)	70, 460, 749

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.