FvH4_6g05440

transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0002598
Physical Location & Seq
Reverse (-)
3061799 .. 3063561
1763 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g05440.t2

Sequence Viewer

Length: 936 bp
ATGGCGCTAGACGCCGACGTCGTTTTCCCTCAAGATCCTTTTACTTACACTACTAACAAAGACCTTTACAACTTGTTAGTAGGGAATTGGAGCTATGATGGTCATGAAAACTATCATCATCAGCAGCAGCTGCAAGAAGCAGCAGCCTCATTTGATTTTCTCAGCAACCAAACAGATCACCATTTTACTAGTTACTCCACAACTCCTTCAATGGTTACCCATTTTGATGATTTGCAGCTCTCCAATTCAAACCCGGATGCCCCGACTGACTTTGATCAATATTCTCAGTTCCAACTTCCATCAGTGGAGTATACAGGTCAGACGACCACCACTCGTCCCAAACGACGGCGAGCCAGGAGTAAAAAGAACAAGGAGGAGATTGAGAACCAGAGAATGACGCACATTGCTGTTGAGCGTAACCGAAGAAAACAAATGAATGAGTATCTTTCTGCCCTTCGATCTATAATGCCCGATTCATATGTCCAAAGGGGTGACCAAGCATCAATCATTGGAGGTGCTATTAACTTTGTAAAGGAGTTAGAGAACCAAGTGCAATTCCTCGGTGCTCAAAACCCAAACAGAAACAGTTCGGATTTGCCTTTCTCAGACTTCTTTAGCTTCCCACAATACTCATCATCAACAAGAGCTAGTACTAGTACTGCTCATCAGACTAGTCATGAAAATCGATATGATTCCGATCAGATGCCGTCGGTTGAGCACAAGTACCCAGCGGATATGAATGTGAAGGCTGCAGCAGACATAGAGGTGACTATGGTGGAGAGCCATGCAAACCTCAAGGTCAGATCAAAAAGGGTTCCGAAGCAGCTCTTGAAGTTTGTTTCTGGGTTGCACACACTGCGCCTCACCATTCTTCACCTCAATGTTTCAACTGTTGACGAAATTGTCCTCTATTCACTTAGCGTCAAGAGCAGGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
HLH

Protein Analysis

312

Amino Acids

35.59

Weight (kDa)

6.35

Isoelectric Point (pI)

48.95

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
HLH PF00010 130 - 181 2.5e-12 Helix-loop-helix DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 2 cut(s) 17, 902
AatII GACGTC 1 cut(s) 21
Acc36I ACCTGC 1 cut(s) 921
AccI GTMKAC 1 cut(s) 311
AciI CCGC 1 cut(s) 731
AclWI GGATC 1 cut(s) 29
AcyI GRCGYC 2 cut(s) 12, 18
AfaI GTAC 3 cut(s) 652, 658, 725
AfiI CCNNNNNNNGG 1 cut(s) 345
AgsI TTSAA 4 cut(s) 210, 249, 832, 888
AhlI ACTAGT 3 cut(s) 188, 653, 671
AjnI CCWGG 1 cut(s) 353
AluBI AGCT 6 cut(s) 93, 130, 238, 618, 647, 826
AluI AGCT 6 cut(s) 93, 130, 238, 618, 647, 826
Alw21I GWGCWC 2 cut(s) 568, 720
AlwI GGATC 1 cut(s) 29
AlwNI CAGNNNCTG 1 cut(s) 130
ApeKI GCWGC 9 cut(s) 124, 127, 130, 140, 143, 235, 749, 752, 823
Asp700I GAANNNNTTC 1 cut(s) 586
AspLEI GCGC 2 cut(s) 7, 861
AsuC2I CCSGG 1 cut(s) 254
AsuHPI GGTGA 5 cut(s) 170, 503, 778, 856, 866
Bbv12I GWGCWC 2 cut(s) 568, 720
BbvI GCAGC 9 cut(s) 117, 136, 139, 152, 155, 247, 736, 764, 835
BccI CCATC 2 cut(s) 92, 307
BceAI ACGGC 2 cut(s) 362, 691
BciT130I CCWGG 1 cut(s) 355
BclI TGATCA 1 cut(s) 274
BcnI CCSGG 1 cut(s) 254
BcuI ACTAGT 3 cut(s) 188, 653, 671
BfaI CTAG 5 cut(s) 8, 189, 648, 654, 672
BfmI CTRYAG 1 cut(s) 750
BfoI RGCGCY 1 cut(s) 8
BfuAI ACCTGC 1 cut(s) 921
BisI GCNGC 9 cut(s) 125, 128, 131, 141, 144, 236, 750, 753, 824
BlsI GCNGC 9 cut(s) 126, 129, 132, 142, 145, 237, 751, 754, 825
BmcAI AGTACT 2 cut(s) 652, 658
Bme1390I CCNGG 2 cut(s) 254, 355
BmiI GGNNCC 1 cut(s) 816
BmrFI CCNGG 2 cut(s) 254, 355
BmsI GCATC 3 cut(s) 247, 509, 693
BpuEI CTTGAG 2 cut(s) 15, 779
BpuMI CCSGG 1 cut(s) 254
Bsa29I ATCGAT 1 cut(s) 685
BsaBI GATNNNNATC 1 cut(s) 696
BsaHI GRCGYC 2 cut(s) 12, 18
BsaJI CCNNGG 1 cut(s) 559
Bsc4I CCNNNNNNNGG 1 cut(s) 345
Bse3DI GCAATG 1 cut(s) 402
Bse8I GATNNNNATC 1 cut(s) 696
BseBI CCWGG 1 cut(s) 355
BseCI ATCGAT 1 cut(s) 685
BseDI CCNNGG 1 cut(s) 559
BseGI GGATG 1 cut(s) 262
BseJI GATNNNNATC 1 cut(s) 696
BseLI CCNNNNNNNGG 1 cut(s) 345
BseMI GCAATG 1 cut(s) 402
BseMII CTCAG 3 cut(s) 175, 299, 618
BseRI GAGGAG 1 cut(s) 389
BseXI GCAGC 9 cut(s) 117, 136, 139, 152, 155, 247, 736, 764, 835
BseYI CCCAGC 1 cut(s) 727
BshVI ATCGAT 1 cut(s) 685
BsiHKAI GWGCWC 2 cut(s) 568, 720
BsiSI CCGG 1 cut(s) 254
BslFI GGGAC 1 cut(s) 321
BslI CCNNNNNNNGG 1 cut(s) 345
BsmFI GGGAC 1 cut(s) 321
Bsp1286I GDGCHC 2 cut(s) 568, 720
Bsp143I GATC 6 cut(s) 34, 175, 274, 458, 697, 803
BspACI CCGC 1 cut(s) 731
BspCNI CTCAG 3 cut(s) 174, 298, 617
BspDI ATCGAT 1 cut(s) 685
BspHI TCATGA 2 cut(s) 103, 676
BspLI GGNNCC 1 cut(s) 816
BspMAI CTGCAG 1 cut(s) 754
BspMI ACCTGC 1 cut(s) 921
BspPI GGATC 1 cut(s) 29
BsrDI GCAATG 1 cut(s) 402
BssECI CCNNGG 1 cut(s) 559
BssMI GATC 6 cut(s) 34, 175, 274, 458, 697, 803
BssNAI GTATAC 1 cut(s) 312
BssNI GRCGYC 2 cut(s) 12, 18
Bst1107I GTATAC 1 cut(s) 312
Bst2UI CCWGG 1 cut(s) 355
Bst4CI ACNGT 2 cut(s) 587, 892
BstACI GRCGYC 2 cut(s) 12, 18
BstAPI GCANNNNNTGC 2 cut(s) 130, 856
BstC8I GCNNGC 1 cut(s) 351
BstDEI CTNAG 4 cut(s) 161, 285, 604, 917
BstEII GGTNACC 2 cut(s) 214, 491
BstF5I GGATG 1 cut(s) 262
BstH2I RGCGCY 1 cut(s) 8
BstHHI GCGC 2 cut(s) 7, 861
BstKTI GATC 6 cut(s) 37, 178, 277, 461, 700, 806
BstMBI GATC 6 cut(s) 34, 175, 274, 458, 697, 803
BstMWI GCNNNNNNNGC 4 cut(s) 11, 130, 856, 927
BstNI CCWGG 1 cut(s) 355
BstPI GGTNACC 2 cut(s) 214, 491
BstSCI CCNGG 2 cut(s) 252, 353
BstSFI CTRYAG 1 cut(s) 750
BstV1I GCAGC 9 cut(s) 117, 136, 139, 152, 155, 247, 736, 764, 835
BstX2I RGATCY 1 cut(s) 34
BstYI RGATCY 1 cut(s) 34
BstZ17I GTATAC 1 cut(s) 312
Bsu15I ATCGAT 1 cut(s) 685
BsuTUI ATCGAT 1 cut(s) 685
BtsCI GGATG 1 cut(s) 262
BtsI GCAGTG 1 cut(s) 854
BtsIMutI CAGTG 2 cut(s) 309, 854
BveI ACCTGC 1 cut(s) 921
Cac8I GCNNGC 1 cut(s) 351
CaiI CAGNNNCTG 1 cut(s) 130
CciI TCATGA 2 cut(s) 103, 676
CfoI GCGC 2 cut(s) 7, 861
ClaI ATCGAT 1 cut(s) 685
CseI GACGC 3 cut(s) 20, 406, 910
Csp6I GTAC 3 cut(s) 651, 657, 724
CviAII CATG 3 cut(s) 104, 677, 785
CviQI GTAC 3 cut(s) 651, 657, 724
DdeI CTNAG 4 cut(s) 161, 285, 604, 917
DpnI GATC 6 cut(s) 36, 177, 276, 460, 699, 805
DpnII GATC 6 cut(s) 34, 175, 274, 458, 697, 803
DrdI GACNNNNNNGTC 2 cut(s) 17, 902
DseDI GACNNNNNNGTC 2 cut(s) 17, 902
Eco91I GGTNACC 2 cut(s) 214, 491
EcoO65I GGTNACC 2 cut(s) 214, 491
EcoRII CCWGG 1 cut(s) 353
FaeI CATG 3 cut(s) 107, 680, 788
FalI AAGNNNNNCTT 2 cut(s) 812, 844
FaqI GGGAC 1 cut(s) 321
FatI CATG 3 cut(s) 103, 676, 784
FauNDI CATATG 1 cut(s) 478
FbaI TGATCA 1 cut(s) 274
FblI GTMKAC 1 cut(s) 311
Fnu4HI GCNGC 9 cut(s) 125, 128, 131, 141, 144, 236, 750, 753, 824
FokI GGATG 1 cut(s) 269
Fsp4HI GCNGC 9 cut(s) 125, 128, 131, 141, 144, 236, 750, 753, 824
FspBI CTAG 5 cut(s) 8, 189, 648, 654, 672
GlaI GCGC 2 cut(s) 6, 860
GluI GCNGC 9 cut(s) 125, 128, 131, 141, 144, 236, 750, 753, 824
GsaI CCCAGC 1 cut(s) 731
HaeII RGCGCY 1 cut(s) 8
HapII CCGG 1 cut(s) 254
HgaI GACGC 3 cut(s) 20, 406, 910
HhaI GCGC 2 cut(s) 7, 861
Hin1I GRCGYC 2 cut(s) 12, 18
Hin1II CATG 3 cut(s) 107, 680, 788
Hin6I GCGC 2 cut(s) 5, 859
HinP1I GCGC 2 cut(s) 5, 859
HincII GTYRAC 1 cut(s) 895
HindII GTYRAC 1 cut(s) 895
HinfI GANTC 2 cut(s) 473, 692
HpaII CCGG 1 cut(s) 254
HphI GGTGA 5 cut(s) 170, 503, 778, 856, 866
Hpy166II GTNNAC 2 cut(s) 312, 895
Hpy188I TCNGA 8 cut(s) 321, 592, 607, 669, 697, 702, 803, 819
Hpy188III TCNNGA 5 cut(s) 32, 104, 677, 829, 925
Hpy8I GTNNAC 2 cut(s) 312, 895
Hpy99I CGWCG 4 cut(s) 20, 23, 348, 712
HpyAV CCTTC 3 cut(s) 216, 464, 739
HpyCH4III ACNGT 2 cut(s) 587, 892
HpyCH4IV ACGT 1 cut(s) 18
HpyCH4V TGCA 6 cut(s) 133, 235, 553, 752, 788, 850
HpyF10VI GCNNNNNNNGC 4 cut(s) 11, 130, 856, 927
HpyF3I CTNAG 4 cut(s) 161, 285, 604, 917
HpySE526I ACGT 1 cut(s) 18
Hsp92I GRCGYC 2 cut(s) 12, 18
Hsp92II CATG 3 cut(s) 107, 680, 788
HspAI GCGC 2 cut(s) 5, 859
Ksp22I TGATCA 1 cut(s) 274
Kzo9I GATC 6 cut(s) 34, 175, 274, 458, 697, 803
LmnI GCTCC 1 cut(s) 90
LpnPI CCDG 8 cut(s) 267, 300, 340, 367, 401, 741, 828, 916
Lsp1109I GCAGC 9 cut(s) 117, 136, 139, 152, 155, 247, 736, 764, 835
LweI GCATC 3 cut(s) 247, 509, 693
MaeI CTAG 5 cut(s) 8, 189, 648, 654, 672
MaeII ACGT 1 cut(s) 18
MaeIII GTNAC 5 cut(s) 191, 214, 416, 491, 766
MalI GATC 6 cut(s) 36, 177, 276, 460, 699, 805
MboI GATC 6 cut(s) 34, 175, 274, 458, 697, 803
MboII GAAGA 2 cut(s) 435, 863
MflI RGATCY 1 cut(s) 34
MhlI GDGCHC 2 cut(s) 568, 720
MluCI AATT 4 cut(s) 85, 244, 554, 900
MmeI TCCRAC 1 cut(s) 316
MroXI GAANNNNTTC 1 cut(s) 586
MseI TTAA 1 cut(s) 522
MslI CAYNNNNRTG 3 cut(s) 225, 764, 879
MspA1I CMGCKG 2 cut(s) 130, 731
MspI CCGG 1 cut(s) 254
MspR9I CCNGG 2 cut(s) 254, 355
MvaI CCWGG 1 cut(s) 355
MwoI GCNNNNNNNGC 4 cut(s) 11, 130, 856, 927
NciI CCSGG 1 cut(s) 254
NdeI CATATG 1 cut(s) 478
NdeII GATC 6 cut(s) 34, 175, 274, 458, 697, 803
NlaIII CATG 3 cut(s) 107, 680, 788
NlaIV GGNNCC 1 cut(s) 816
NmuCI GTSAC 2 cut(s) 491, 766
PagI TCATGA 2 cut(s) 103, 676
PcsI WCGNNNNNNNCGW 2 cut(s) 18, 340
PdmI GAANNNNTTC 1 cut(s) 586
PfeI GAWTC 2 cut(s) 473, 692
PkrI GCNGC 9 cut(s) 126, 129, 132, 142, 145, 237, 751, 754, 825
Psp6I CCWGG 1 cut(s) 353
PspEI GGTNACC 2 cut(s) 214, 491
PspFI CCCAGC 1 cut(s) 727
PspGI CCWGG 1 cut(s) 353
PspN4I GGNNCC 1 cut(s) 816
PstI CTGCAG 1 cut(s) 754
PstNI CAGNNNCTG 1 cut(s) 130
PsuI RGATCY 1 cut(s) 34
PvuII CAGCTG 1 cut(s) 130
RsaI GTAC 3 cut(s) 652, 658, 725
RsaNI GTAC 3 cut(s) 651, 657, 724
RseI CAYNNNNRTG 3 cut(s) 225, 764, 879
SaqAI TTAA 1 cut(s) 522
SatI GCNGC 9 cut(s) 125, 128, 131, 141, 144, 236, 750, 753, 824
Sau3AI GATC 6 cut(s) 34, 175, 274, 458, 697, 803
ScaI AGTACT 2 cut(s) 652, 658
ScrFI CCNGG 2 cut(s) 254, 355
SduI GDGCHC 2 cut(s) 568, 720
SfaNI GCATC 3 cut(s) 247, 509, 693
SfcI CTRYAG 1 cut(s) 750
SmiMI CAYNNNNRTG 3 cut(s) 225, 764, 879
SmlI CTYRAG 2 cut(s) 30, 794
SmoI CTYRAG 2 cut(s) 30, 794
SpeI ACTAGT 3 cut(s) 188, 653, 671
Sse9I AATT 4 cut(s) 85, 244, 554, 900
SsiI CCGC 1 cut(s) 731
SspI AATATT 1 cut(s) 281
SspMI CTAG 5 cut(s) 8, 189, 648, 654, 672
StyD4I CCNGG 2 cut(s) 252, 353
TaaI ACNGT 2 cut(s) 587, 892
TaiI ACGT 1 cut(s) 21
TaqI TCGA 2 cut(s) 457, 685
TasI AATT 4 cut(s) 85, 244, 554, 900
TatI WGTACW 2 cut(s) 650, 656
TfiI GAWTC 2 cut(s) 473, 692
Tru1I TTAA 1 cut(s) 522
Tru9I TTAA 1 cut(s) 522
TscAI CASTG 2 cut(s) 309, 861
TseFI GTSAC 2 cut(s) 491, 766
TseI GCWGC 9 cut(s) 124, 127, 130, 140, 143, 235, 749, 752, 823
Tsp45I GTSAC 2 cut(s) 491, 766
TspDTI ATGAA 5 cut(s) 120, 449, 465, 693, 752
TspRI CASTG 2 cut(s) 309, 861
XmiI GTMKAC 1 cut(s) 311
XmnI GAANNNNTTC 1 cut(s) 586
XspI CTAG 5 cut(s) 8, 189, 648, 654, 672
ZraI GACGTC 1 cut(s) 19
ZrmI AGTACT 2 cut(s) 652, 658
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.