Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7C

Orthogroup ID

OG0002598

Physical Location & Seq

Genomic Coordinates Forward (+)

65161557 .. 65163881

Gene Structure 2325 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7CG484000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 972 bp

ATGGCATTAGAAGCCGTGGTTTACCCAAAAGACTACAACCCATTTAGCTATGTGTGCAAAGATTTCTACTCCCTTGCACCTTCTAACTGGGGCTATGATTTTAGCTTACAAGAGAATATTCAAGACAAAGCCCTTGTTGGACTTCTTGATCATCAGTATAACAACATACACCATCACCAAGGCAGTCTCAATGAAAATTGGGAGTATAACTGCTCATCATCTCCTCCTTCACTTCTGCAAAATGTGAAGGAATGGGATCCTCATTCCTCACCTGAGGCCTTGGAAACCCCGCCACCGCCACCGCCACTGGCAACAACAGGTAGACGCAAACGCCGTCGTACCAGAAGCAGCAAGAACAAAGAAGAAATGGAGAACCAACGCATGACCCACATTGTAGTGGAGCGCAACCGCCGCAAGCAAATGAACGAGTACCTCGCCGTCCTCCGCTCTTTGATGCCAACGTCTTATGTTCAAAGGGGGGATCAAGCATCAATTATTGGGGGAGCAATTAACTTTGTGAAGGAGCTAGAGCAACTGTTGCAGTCCATGGACGGCAGCCATAAGAGGGCTACCAAGCCAGAACAAGTACCTCTGGCAGAGTTCTTTACCTTTCCACAGTTCTCCACACCTGCGACGACACAGTGTAACAGCAACACTTCATCATCGTCTTCGTCATCATCTGAGGGTATCCAAATAAACGACGAGCCGTCCTTGGCTCCTCGGAGCAACAATAACAACAACCAGTGGGCAGCTGCAGACATAGAAGTGACCATGGTGGACAGCCATGCCAATCTTAAGATATTGTCCAAGAAGAGGCCTAGGCAGTTGTTGAAGATGGTGGCAGGGTTTCAAAGTCTTGGGCTAAGTGTCCTTCACCTCAATGTCACCACTGTTGATGAAATGGTCCTCTACTCTGTTAGTGTTAAGGTAATTAATCCAAAAGTGCTCTCATCTTCTCACTTACTTGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HLH

Protein Analysis

323

Amino Acids

36.39

Weight (kDa)

7.16

Isoelectric Point (pI)

61.2

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HLH	PF00010	126 - 177	6.6e-12	Helix-loop-helix DNA-binding domain
bHLH-TF_ACT-like_plant	PF22754	253 - 310	5.7e-06	Plant bHLH transcription factor, ACT-like domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002598)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G22490 AT1G22490 AT1G72210 AT1G72210
fragaria_vesca	FvH4_5g36240 FvH4_5g36240 FvH4_6g05440 FvH4_6g05440
malus_domestica	MD04G1208700.v1.1 MD08G1190500.v1.1 MD12G1223000.v1.1 MD15G1377800.v1.1
prunus_persica	Prupe.1G524500_v2.0.a1 Prupe.1G524500_v2.0.a1 Prupe.6G329600_v2.0.a1 Prupe.6G329600_v2.0.a1
pyrus_communis	pycom04g18480 pycom08g16370 pycom12g20890 pycom15g33850
rosa_chinensis	RchiOBHm_Chr3g0454211 RchiOBHm_Chr7g0238141
rosa_laevigata	RLG00000000939 RLG00000025476
rosa_multiflora	Rmu_sc0007628.1_g000004
rosa_roxburghii	Rroxscaffold_165G00436990 Rroxscaffold_3G00223340 Rroxscaffold_6G00425370
rosa_rugosa	Rorug02G0653500 Rorug07G0310500
rosa_samantha	Rh3AG056600 Rh3BG058100 Rh3CG057300 Rh3DG058600 Rh7AG466000 Rh7BG436700 Rh7CG484000 Rh7DG452400
rosa_wichuraiana	Rw3G004360 Rw7G038590

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	637
Acc36I	ACCTGC	1 cut(s)	637
AccBSI	CCGCTC	1 cut(s)	447
AccI	GTMKAC	1 cut(s)	322
AciI	CCGC	6 cut(s)	290, 296, 302, 409, 412, 445
AclWI	GGATC	3 cut(s)	251, 264, 489
AfaI	GTAC	3 cut(s)	340, 431, 588
AfiI	CCNNNNNNNGG	2 cut(s)	565, 813
AflII	CTTAAG	1 cut(s)	794
AgsI	TTSAA	4 cut(s)	122, 473, 832, 851
AhdI	GACNNNNNGTC	1 cut(s)	706
AluBI	AGCT	4 cut(s)	48, 105, 526, 752
AluI	AGCT	4 cut(s)	48, 105, 526, 752
Alw21I	GWGCWC	1 cut(s)	948
Alw26I	GTCTC	1 cut(s)	191
AlwI	GGATC	3 cut(s)	251, 264, 489
AoxI	GGCC	2 cut(s)	276, 815
ApeKI	GCWGC	4 cut(s)	348, 555, 749, 752
AseI	ATTAAT	1 cut(s)	933
AspA2I	CCTAGG	1 cut(s)	818
AspLEI	GCGC	1 cut(s)	405
AspS9I	GGNCC	1 cut(s)	904
AsuHPI	GGTGA	4 cut(s)	167, 261, 866, 877
AvaII	GGWCC	1 cut(s)	904
AvrII	CCTAGG	1 cut(s)	818
AxyI	CCTNAGG	1 cut(s)	273
BamHI	GGATCC	1 cut(s)	256
BbsI	GAAGAC	1 cut(s)	660
Bbv12I	GWGCWC	1 cut(s)	948
BbvI	GCAGC	4 cut(s)	360, 567, 739, 761
BccI	CCATC	2 cut(s)	180, 829
BceAI	ACGGC	4 cut(s)	318, 422, 568, 691
BciVI	GTATCC	1 cut(s)	698
BclI	TGATCA	1 cut(s)	148
BcoDI	GTCTC	1 cut(s)	191
BfaI	CTAG	2 cut(s)	527, 819
BfmI	CTRYAG	1 cut(s)	753
BfrI	CTTAAG	1 cut(s)	794
BfuAI	ACCTGC	1 cut(s)	637
BfuI	GTATCC	1 cut(s)	698
BisI	GCNGC	5 cut(s)	349, 412, 556, 750, 753
BlnI	CCTAGG	1 cut(s)	818
BlsI	GCNGC	5 cut(s)	350, 413, 557, 751, 754
Bme18I	GGWCC	1 cut(s)	904
BmeRI	GACNNNNNGTC	1 cut(s)	706
BmgT120I	GGNCC	1 cut(s)	904
BmiI	GGNNCC	2 cut(s)	258, 717
BmrI	ACTGGG	1 cut(s)	97
BmsI	GCATC	2 cut(s)	444, 497
BmuI	ACTGGG	1 cut(s)	97
BpiI	GAAGAC	1 cut(s)	660
BsaJI	CCNNGG	8 cut(s)	15, 178, 279, 546, 711, 719, 771, 818
Bsc4I	CCNNNNNNNGG	2 cut(s)	565, 813
Bse1I	ACTGG	3 cut(s)	92, 312, 742
Bse21I	CCTNAGG	1 cut(s)	273
BseDI	CCNNGG	8 cut(s)	15, 178, 279, 546, 711, 719, 771, 818
BseLI	CCNNNNNNNGG	2 cut(s)	565, 813
BseMII	CTCAG	2 cut(s)	264, 672
BseNI	ACTGG	3 cut(s)	92, 312, 742
BseRI	GAGGAG	2 cut(s)	213, 708
BseXI	GCAGC	4 cut(s)	360, 567, 739, 761
BshFI	GGCC	2 cut(s)	278, 817
BsiHKAI	GWGCWC	1 cut(s)	948
BslI	CCNNNNNNNGG	2 cut(s)	565, 813
BsmAI	GTCTC	1 cut(s)	191
BsnI	GGCC	2 cut(s)	278, 817
Bsp1286I	GDGCHC	1 cut(s)	948
Bsp143I	GATC	3 cut(s)	148, 256, 481
Bsp19I	CCATGG	2 cut(s)	546, 771
BspACI	CCGC	6 cut(s)	290, 296, 302, 409, 412, 445
BspANI	GGCC	2 cut(s)	278, 817
BspCNI	CTCAG	2 cut(s)	265, 673
BspLI	GGNNCC	2 cut(s)	258, 717
BspMAI	CTGCAG	1 cut(s)	757
BspMI	ACCTGC	1 cut(s)	637
BspPI	GGATC	3 cut(s)	251, 264, 489
BspTI	CTTAAG	1 cut(s)	794
BsrBI	CCGCTC	1 cut(s)	447
BsrI	ACTGG	3 cut(s)	92, 312, 742
BssECI	CCNNGG	8 cut(s)	15, 178, 279, 546, 711, 719, 771, 818
BssMI	GATC	3 cut(s)	148, 256, 481
BssT1I	CCWWGG	6 cut(s)	178, 279, 546, 711, 771, 818
Bst4CI	ACNGT	4 cut(s)	537, 618, 642, 892
Bst6I	CTCTTC	1 cut(s)	806
BstAFI	CTTAAG	1 cut(s)	794
BstAPI	GCANNNNNTGC	1 cut(s)	538
BstC8I	GCNNGC	1 cut(s)	416
BstDEI	CTNAG	3 cut(s)	273, 681, 863
BstDSI	CCRYGG	3 cut(s)	15, 546, 771
BstHHI	GCGC	1 cut(s)	405
BstKTI	GATC	3 cut(s)	151, 259, 484
BstMAI	GTCTC	1 cut(s)	191
BstMBI	GATC	3 cut(s)	148, 256, 481
BstMWI	GCNNNNNNNGC	4 cut(s)	11, 54, 411, 538
BstSFI	CTRYAG	1 cut(s)	753
BstV1I	GCAGC	4 cut(s)	360, 567, 739, 761
BstV2I	GAAGAC	1 cut(s)	660
BstX2I	RGATCY	1 cut(s)	256
BstYI	RGATCY	1 cut(s)	256
Bsu36I	CCTNAGG	1 cut(s)	273
BsuI	GTATCC	1 cut(s)	698
BsuRI	GGCC	2 cut(s)	278, 817
BtgI	CCRYGG	3 cut(s)	15, 546, 771
BtsIMutI	CAGTG	4 cut(s)	305, 647, 749, 888
BveI	ACCTGC	1 cut(s)	637
Cac8I	GCNNGC	1 cut(s)	416
CfoI	GCGC	1 cut(s)	405
Cfr13I	GGNCC	1 cut(s)	904
CseI	GACGC	1 cut(s)	333
Csp6I	GTAC	3 cut(s)	339, 430, 587
CviAII	CATG	4 cut(s)	382, 547, 772, 785
CviQI	GTAC	3 cut(s)	339, 430, 587
DdeI	CTNAG	3 cut(s)	273, 681, 863
DpnI	GATC	3 cut(s)	150, 258, 483
DpnII	GATC	3 cut(s)	148, 256, 481
DriI	GACNNNNNGTC	1 cut(s)	706
Eam1104I	CTCTTC	1 cut(s)	806
Eam1105I	GACNNNNNGTC	1 cut(s)	706
EarI	CTCTTC	1 cut(s)	806
Eco130I	CCWWGG	6 cut(s)	178, 279, 546, 711, 771, 818
Eco147I	AGGCCT	2 cut(s)	278, 817
Eco47I	GGWCC	1 cut(s)	904
Eco81I	CCTNAGG	1 cut(s)	273
EcoT14I	CCWWGG	6 cut(s)	178, 279, 546, 711, 771, 818
ErhI	CCWWGG	6 cut(s)	178, 279, 546, 711, 771, 818
FaeI	CATG	4 cut(s)	385, 550, 775, 788
FatI	CATG	4 cut(s)	381, 546, 771, 784
FauI	CCCGC	1 cut(s)	297
FbaI	TGATCA	1 cut(s)	148
FblI	GTMKAC	1 cut(s)	322
Fnu4HI	GCNGC	5 cut(s)	349, 412, 556, 750, 753
Fsp4HI	GCNGC	5 cut(s)	349, 412, 556, 750, 753
FspBI	CTAG	2 cut(s)	527, 819
GlaI	GCGC	1 cut(s)	404
GluI	GCNGC	5 cut(s)	349, 412, 556, 750, 753
HaeIII	GGCC	2 cut(s)	278, 817
HgaI	GACGC	1 cut(s)	333
HhaI	GCGC	1 cut(s)	405
Hin1II	CATG	4 cut(s)	385, 550, 775, 788
Hin6I	GCGC	1 cut(s)	403
HinP1I	GCGC	1 cut(s)	403
HphI	GGTGA	4 cut(s)	167, 261, 866, 877
Hpy166II	GTNNAC	3 cut(s)	22, 323, 778
Hpy188I	TCNGA	2 cut(s)	682, 723
Hpy188III	TCNNGA	2 cut(s)	122, 146
Hpy8I	GTNNAC	3 cut(s)	22, 323, 778
Hpy99I	CGWCG	3 cut(s)	339, 637, 704
HpyAV	CCTTC	5 cut(s)	90, 237, 241, 514, 881
HpyCH4III	ACNGT	4 cut(s)	537, 618, 642, 892
HpyCH4IV	ACGT	1 cut(s)	461
HpyCH4V	TGCA	5 cut(s)	57, 77, 238, 541, 755
HpyF10VI	GCNNNNNNNGC	4 cut(s)	11, 54, 411, 538
HpyF3I	CTNAG	3 cut(s)	273, 681, 863
HpySE526I	ACGT	1 cut(s)	461
Hsp92II	CATG	4 cut(s)	385, 550, 775, 788
HspAI	GCGC	1 cut(s)	403
Ksp22I	TGATCA	1 cut(s)	148
Kzo9I	GATC	3 cut(s)	148, 256, 481
LmnI	GCTCC	5 cut(s)	400, 503, 523, 721, 723
Lsp1109I	GCAGC	4 cut(s)	360, 567, 739, 761
LweI	GCATC	2 cut(s)	444, 497
MaeI	CTAG	2 cut(s)	527, 819
MaeII	ACGT	1 cut(s)	461
MaeIII	GTNAC	3 cut(s)	644, 766, 883
MalI	GATC	3 cut(s)	150, 258, 483
MbiI	CCGCTC	1 cut(s)	447
MboI	GATC	3 cut(s)	148, 256, 481
MboII	GAAGA	5 cut(s)	374, 660, 823, 844, 945
MflI	RGATCY	1 cut(s)	256
MhlI	GDGCHC	1 cut(s)	948
MluCI	AATT	4 cut(s)	196, 492, 507, 930
MmeI	TCCRAC	1 cut(s)	118
MseI	TTAA	4 cut(s)	510, 795, 924, 933
MslI	CAYNNNNRTG	3 cut(s)	395, 764, 879
MspA1I	CMGCKG	1 cut(s)	752
MspCI	CTTAAG	1 cut(s)	794
MwoI	GCNNNNNNNGC	4 cut(s)	11, 54, 411, 538
NcoI	CCATGG	2 cut(s)	546, 771
NdeII	GATC	3 cut(s)	148, 256, 481
NlaIII	CATG	4 cut(s)	385, 550, 775, 788
NlaIV	GGNNCC	2 cut(s)	258, 717
NmuCI	GTSAC	2 cut(s)	766, 883
PaqCI	CACCTGC	1 cut(s)	637
PceI	AGGCCT	2 cut(s)	278, 817
PcsI	WCGNNNNNNNCGW	1 cut(s)	331
PkrI	GCNGC	5 cut(s)	350, 413, 557, 751, 754
PshBI	ATTAAT	1 cut(s)	933
PspN4I	GGNNCC	2 cut(s)	258, 717
PspPI	GGNCC	1 cut(s)	904
PstI	CTGCAG	1 cut(s)	757
PsuI	RGATCY	1 cut(s)	256
PvuII	CAGCTG	1 cut(s)	752
RsaI	GTAC	3 cut(s)	340, 431, 588
RsaNI	GTAC	3 cut(s)	339, 430, 587
RseI	CAYNNNNRTG	3 cut(s)	395, 764, 879
SaqAI	TTAA	4 cut(s)	510, 795, 924, 933
SatI	GCNGC	5 cut(s)	349, 412, 556, 750, 753
Sau3AI	GATC	3 cut(s)	148, 256, 481
Sau96I	GGNCC	1 cut(s)	904
SduI	GDGCHC	1 cut(s)	948
SfaNI	GCATC	2 cut(s)	444, 497
SfcI	CTRYAG	1 cut(s)	753
SinI	GGWCC	1 cut(s)	904
SmiMI	CAYNNNNRTG	3 cut(s)	395, 764, 879
SmlI	CTYRAG	1 cut(s)	794
SmoI	CTYRAG	1 cut(s)	794
Sse9I	AATT	4 cut(s)	196, 492, 507, 930
SseBI	AGGCCT	2 cut(s)	278, 817
SsiI	CCGC	6 cut(s)	290, 296, 302, 409, 412, 445
SspI	AATATT	1 cut(s)	118
SspMI	CTAG	2 cut(s)	527, 819
StuI	AGGCCT	2 cut(s)	278, 817
StyI	CCWWGG	6 cut(s)	178, 279, 546, 711, 771, 818
TaaI	ACNGT	4 cut(s)	537, 618, 642, 892
TaiI	ACGT	1 cut(s)	464
TasI	AATT	4 cut(s)	196, 492, 507, 930
TauI	GCSGC	1 cut(s)	414
Tru1I	TTAA	4 cut(s)	510, 795, 924, 933
Tru9I	TTAA	4 cut(s)	510, 795, 924, 933
TscAI	CASTG	4 cut(s)	312, 647, 749, 895
TseFI	GTSAC	2 cut(s)	766, 883
TseI	GCWGC	4 cut(s)	348, 555, 749, 752
Tsp45I	GTSAC	2 cut(s)	766, 883
TspDTI	ATGAA	4 cut(s)	207, 437, 648, 912
TspRI	CASTG	4 cut(s)	312, 647, 749, 895
Vha464I	CTTAAG	1 cut(s)	794
VpaK11BI	GGWCC	1 cut(s)	904
VspI	ATTAAT	1 cut(s)	933
XmaJI	CCTAGG	1 cut(s)	818
XmiI	GTMKAC	1 cut(s)	322
XspI	CTAG	2 cut(s)	527, 819

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.