Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000007

Orthogroup ID

OG0002598

Physical Location & Seq

Genomic Coordinates Reverse (-)

31095913 .. 31097475

Gene Structure 1563 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug07G0310500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 957 bp

ATGGAAAAGATCGAGCACAAGTATGTGGAAGTAGGAGGACTAAAGCTTCATGTAGCTGAAATTGGAAGTGGTGCGTATGTCCAAAGGTGGTGCTTTTCCTGCATGGATTTCCAGAAATATGGTACTCGTGGAGGCACCAAATGGTTGCTGTTGCCAACAATGGCTACCGGGCAATTGCCTATGATTGCAGGGGATCGATATGGACTTTCTGAGCAGCCAGCTGAGCCTGAAAAGGCTACTTTTAATGACCTTGTTGAAGAGGTTCTTGGCCTTTTGGATTCTTTGGCCATTAACAAGGCTTTCCTTGTTGGTAAGGAATTTGGAGCTATGCCTGCATACATAGTAGCTGCTCTCCATCCTGATCGAGTAGCTGGTCTTATATCACTAGGTGTTCCTTTTATGCTACCAGGTCCGACTGCTGTCCAAAATCATCTTCTTCCTGAAGGTTTCTATGTATCAAGGTGGCAGGAGCCAGCTGGGAGGGCAGAAGCAGATTTTGGCCGCTTTGATGTTAAGTCAGTGATAAGGAACATCTACATTCTCTTCTGTGGAAGTGAGGTTCCAGTAGCTGCTAAGGATCAAGAGATCATGGATTTGTTTGATCCAGCTATTCCTCTACCACCATGGTTCTCTGAAGAAGATCTTTCAGTCTATGCATCTCTTTATGAGAAGTCTGGATTCCGTTTTCCATTGCAAATTCCATACCGGTGTTTAGCAGTGGACTGCGGTTATACTGATCCAAAAGTCTCTGCTCCAACACTGCTTGTCATGGGTGAGAAAGACTACATCTTAAAGATTCCGGGGTTTGGAGATTACATACGAACTGGGGCAGTGAAGCAATTTGTGCCTGATTTGGACATTAAATACATTGCAGAAGGGAATCATTTCGTGCAAGAACAACTTCCAGAGCAAATTAATCAGCTAATTCTCACTTTTCTTGGAAAACATGGTATCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HLH

Protein Analysis

318

Amino Acids

35.33

Weight (kDa)

5.08

Isoelectric Point (pI)

42.78

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002598)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G22490 AT1G22490 AT1G72210 AT1G72210
fragaria_vesca	FvH4_5g36240 FvH4_5g36240 FvH4_6g05440 FvH4_6g05440
malus_domestica	MD04G1208700.v1.1 MD08G1190500.v1.1 MD12G1223000.v1.1 MD15G1377800.v1.1
prunus_persica	Prupe.1G524500_v2.0.a1 Prupe.1G524500_v2.0.a1 Prupe.6G329600_v2.0.a1 Prupe.6G329600_v2.0.a1
pyrus_communis	pycom04g18480 pycom08g16370 pycom12g20890 pycom15g33850
rosa_chinensis	RchiOBHm_Chr3g0454211 RchiOBHm_Chr7g0238141
rosa_laevigata	RLG00000000939 RLG00000025476
rosa_multiflora	Rmu_sc0007628.1_g000004
rosa_roxburghii	Rroxscaffold_165G00436990 Rroxscaffold_3G00223340 Rroxscaffold_6G00425370
rosa_rugosa	Rorug02G0653500 Rorug07G0310500
rosa_samantha	Rh3AG056600 Rh3BG058100 Rh3CG057300 Rh3DG058600 Rh7AG466000 Rh7BG436700 Rh7CG484000 Rh7DG452400
rosa_wichuraiana	Rw3G004360 Rw7G038590

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	134
AciI	CCGC	2 cut(s)	502, 726
AclWI	GGATC	4 cut(s)	201, 585, 596, 731
AcoI	YGGCCR	2 cut(s)	285, 499
AcsI	RAATTY	2 cut(s)	317, 696
AcuI	CTGAAG	2 cut(s)	462, 654
AdeI	CACNNNGTG	1 cut(s)	389
AfaI	GTAC	1 cut(s)	124
AfiI	CCNNNNNNNGG	1 cut(s)	806
AgeI	ACCGGT	1 cut(s)	705
AgsI	TTSAA	1 cut(s)	257
AjnI	CCWGG	1 cut(s)	406
AjuI	GAANNNNNNNTTGG	6 cut(s)	249, 281, 417, 449, 480, 512
AloI	GAACNNNNNNTCC	2 cut(s)	543, 575
Alw21I	GWGCWC	1 cut(s)	18
Alw26I	GTCTC	1 cut(s)	751
AlwI	GGATC	4 cut(s)	201, 585, 596, 731
AlwNI	CAGNNNCTG	1 cut(s)	569
AoxI	GGCC	3 cut(s)	268, 285, 499
ApeKI	GCWGC	3 cut(s)	214, 347, 569
ApoI	RAATTY	2 cut(s)	317, 696
AseI	ATTAAT	1 cut(s)	915
AsiGI	ACCGGT	1 cut(s)	705
Asp700I	GAANNNNTTC	3 cut(s)	261, 884, 900
AspS9I	GGNCC	1 cut(s)	410
AsuC2I	CCSGG	2 cut(s)	169, 801
AsuHPI	GGTGA	1 cut(s)	785
AvaII	GGWCC	1 cut(s)	410
BalI	TGGCCA	1 cut(s)	287
BanI	GGYRCC	1 cut(s)	134
BauI	CACGAG	1 cut(s)	126
Bbv12I	GWGCWC	1 cut(s)	18
BbvI	GCAGC	3 cut(s)	226, 334, 556
BccI	CCATC	1 cut(s)	363
BciT130I	CCWGG	1 cut(s)	408
BcnI	CCSGG	2 cut(s)	169, 801
BcoDI	GTCTC	1 cut(s)	751
BfaI	CTAG	1 cut(s)	386
BglII	AGATCT	1 cut(s)	640
BisI	GCNGC	4 cut(s)	215, 348, 502, 570
BlpI	GCTNAGC	1 cut(s)	222
BlsI	GCNGC	4 cut(s)	216, 349, 503, 571
Bme1390I	CCNGG	3 cut(s)	169, 408, 801
Bme18I	GGWCC	1 cut(s)	410
BmgT120I	GGNCC	1 cut(s)	410
BmiI	GGNNCC	3 cut(s)	136, 471, 561
BmrFI	CCNGG	3 cut(s)	169, 408, 801
BmrI	ACTGGG	1 cut(s)	834
BmsI	GCATC	1 cut(s)	665
BmuI	ACTGGG	1 cut(s)	834
BoxI	GACNNNNGTC	1 cut(s)	419
Bpu10I	CCTNAGC	1 cut(s)	573
Bpu1102I	GCTNAGC	1 cut(s)	222
BpuMI	CCSGG	2 cut(s)	169, 801
Bsa29I	ATCGAT	1 cut(s)	196
BsaJI	CCNNGG	2 cut(s)	623, 800
BsaWI	WCCGGW	1 cut(s)	705
Bsc4I	CCNNNNNNNGG	1 cut(s)	806
Bse118I	RCCGGY	1 cut(s)	705
Bse1I	ACTGG	2 cut(s)	563, 829
Bse3DI	GCAATG	2 cut(s)	689, 867
BseBI	CCWGG	1 cut(s)	408
BseCI	ATCGAT	1 cut(s)	196
BseDI	CCNNGG	2 cut(s)	623, 800
BseGI	GGATG	1 cut(s)	355
BseLI	CCNNNNNNNGG	1 cut(s)	806
BseMI	GCAATG	2 cut(s)	689, 867
BseMII	CTCAG	2 cut(s)	201, 213
BseNI	ACTGG	2 cut(s)	563, 829
BseXI	GCAGC	3 cut(s)	226, 334, 556
BseYI	CCCAGC	1 cut(s)	476
BshFI	GGCC	3 cut(s)	270, 287, 501
BshNI	GGYRCC	1 cut(s)	134
BshTI	ACCGGT	1 cut(s)	705
BshVI	ATCGAT	1 cut(s)	196
BsiHKAI	GWGCWC	1 cut(s)	18
BsiSI	CCGG	3 cut(s)	168, 706, 800
BslI	CCNNNNNNNGG	1 cut(s)	806
BsmAI	GTCTC	1 cut(s)	751
BsnI	GGCC	3 cut(s)	270, 287, 501
Bsp1286I	GDGCHC	1 cut(s)	18
Bsp143I	GATC	8 cut(s)	9, 193, 361, 577, 585, 601, 640, 736
Bsp1720I	GCTNAGC	1 cut(s)	222
Bsp19I	CCATGG	1 cut(s)	623
BspACI	CCGC	2 cut(s)	502, 726
BspANI	GGCC	3 cut(s)	270, 287, 501
BspCNI	CTCAG	2 cut(s)	202, 214
BspDI	ATCGAT	1 cut(s)	196
BspLI	GGNNCC	3 cut(s)	136, 471, 561
BspPI	GGATC	4 cut(s)	201, 585, 596, 731
BspT107I	GGYRCC	1 cut(s)	134
BsrDI	GCAATG	2 cut(s)	689, 867
BsrFI	RCCGGY	1 cut(s)	705
BsrI	ACTGG	2 cut(s)	563, 829
BssAI	RCCGGY	1 cut(s)	705
BssECI	CCNNGG	2 cut(s)	623, 800
BssMI	GATC	8 cut(s)	9, 193, 361, 577, 585, 601, 640, 736
BssSI	CACGAG	1 cut(s)	126
BssT1I	CCWWGG	1 cut(s)	623
Bst2BI	CACGAG	1 cut(s)	126
Bst2UI	CCWGG	1 cut(s)	408
Bst6I	CTCTTC	2 cut(s)	252, 548
BstAPI	GCANNNNNTGC	1 cut(s)	844
BstC8I	GCNNGC	3 cut(s)	219, 333, 474
BstDEI	CTNAG	3 cut(s)	210, 222, 573
BstDSI	CCRYGG	1 cut(s)	623
BstF5I	GGATG	1 cut(s)	355
BstKTI	GATC	8 cut(s)	12, 196, 364, 580, 588, 604, 643, 739
BstMAI	GTCTC	1 cut(s)	751
BstMBI	GATC	8 cut(s)	9, 193, 361, 577, 585, 601, 640, 736
BstMWI	GCNNNNNNNGC	5 cut(s)	99, 223, 332, 482, 844
BstNI	CCWGG	1 cut(s)	408
BstPAI	GACNNNNGTC	1 cut(s)	419
BstSCI	CCNGG	3 cut(s)	167, 406, 799
BstV1I	GCAGC	3 cut(s)	226, 334, 556
BstX2I	RGATCY	1 cut(s)	640
BstXI	CCANNNNNNTGG	1 cut(s)	119
BstYI	RGATCY	1 cut(s)	640
Bsu15I	ATCGAT	1 cut(s)	196
BsuRI	GGCC	3 cut(s)	270, 287, 501
BsuTUI	ATCGAT	1 cut(s)	196
BtgI	CCRYGG	1 cut(s)	623
BtsCI	GGATG	1 cut(s)	355
BtsI	GCAGTG	3 cut(s)	723, 758, 837
BtsIMutI	CAGTG	4 cut(s)	525, 723, 758, 837
Cac8I	GCNNGC	3 cut(s)	219, 333, 474
CaiI	CAGNNNCTG	1 cut(s)	569
Cfr10I	RCCGGY	1 cut(s)	705
Cfr13I	GGNCC	1 cut(s)	410
ClaI	ATCGAT	1 cut(s)	196
CsiI	ACCWGGT	1 cut(s)	406
Csp6I	GTAC	1 cut(s)	123
CspAI	ACCGGT	1 cut(s)	705
CviAII	CATG	6 cut(s)	50, 103, 589, 624, 769, 947
CviQI	GTAC	1 cut(s)	123
DdeI	CTNAG	3 cut(s)	210, 222, 573
DpnI	GATC	8 cut(s)	11, 195, 363, 579, 587, 603, 642, 738
DpnII	GATC	8 cut(s)	9, 193, 361, 577, 585, 601, 640, 736
DraIII	CACNNNGTG	1 cut(s)	389
EaeI	YGGCCR	2 cut(s)	285, 499
Eam1104I	CTCTTC	2 cut(s)	252, 548
EarI	CTCTTC	2 cut(s)	252, 548
Eco130I	CCWWGG	1 cut(s)	623
Eco47I	GGWCC	1 cut(s)	410
Eco57I	CTGAAG	2 cut(s)	462, 654
EcoRII	CCWGG	1 cut(s)	406
EcoT14I	CCWWGG	1 cut(s)	623
EcoT22I	ATGCAT	1 cut(s)	658
ErhI	CCWWGG	1 cut(s)	623
FaeI	CATG	6 cut(s)	53, 106, 592, 627, 772, 950
FalI	AAGNNNNNCTT	6 cut(s)	249, 281, 627, 659, 885, 917
FatI	CATG	6 cut(s)	49, 102, 588, 623, 768, 946
Fnu4HI	GCNGC	4 cut(s)	215, 348, 502, 570
FokI	GGATG	1 cut(s)	342
Fsp4HI	GCNGC	4 cut(s)	215, 348, 502, 570
FspBI	CTAG	1 cut(s)	386
GluI	GCNGC	4 cut(s)	215, 348, 502, 570
GsaI	CCCAGC	1 cut(s)	480
HaeIII	GGCC	3 cut(s)	270, 287, 501
HapII	CCGG	3 cut(s)	168, 706, 800
Hin1II	CATG	6 cut(s)	53, 106, 592, 627, 772, 950
HindIII	AAGCTT	1 cut(s)	44
HinfI	GANTC	4 cut(s)	278, 678, 796, 880
HpaII	CCGG	3 cut(s)	168, 706, 800
HphI	GGTGA	1 cut(s)	785
Hpy166II	GTNNAC	1 cut(s)	721
Hpy188I	TCNGA	4 cut(s)	211, 414, 634, 956
Hpy188III	TCNNGA	6 cut(s)	112, 359, 440, 581, 675, 905
Hpy8I	GTNNAC	1 cut(s)	721
HpyAV	CCTTC	2 cut(s)	437, 869
HpyCH4V	TGCA	7 cut(s)	102, 188, 335, 656, 694, 872, 892
HpyF10VI	GCNNNNNNNGC	5 cut(s)	99, 223, 332, 482, 844
HpyF3I	CTNAG	3 cut(s)	210, 222, 573
Hsp92II	CATG	6 cut(s)	53, 106, 592, 627, 772, 950
Kzo9I	GATC	8 cut(s)	9, 193, 361, 577, 585, 601, 640, 736
LmnI	GCTCC	3 cut(s)	323, 469, 757
Lsp1109I	GCAGC	3 cut(s)	226, 334, 556
LweI	GCATC	1 cut(s)	665
MabI	ACCWGGT	1 cut(s)	406
MaeI	CTAG	1 cut(s)	386
MalI	GATC	8 cut(s)	11, 195, 363, 579, 587, 603, 642, 738
MboI	GATC	8 cut(s)	9, 193, 361, 577, 585, 601, 640, 736
MboII	GAAGA	6 cut(s)	269, 425, 428, 535, 647, 650
MfeI	CAATTG	1 cut(s)	173
MflI	RGATCY	1 cut(s)	640
MhlI	GDGCHC	1 cut(s)	18
MlsI	TGGCCA	1 cut(s)	287
MluCI	AATT	7 cut(s)	60, 173, 317, 696, 839, 912, 924
MluNI	TGGCCA	1 cut(s)	287
MmeI	TCCRAC	2 cut(s)	437, 779
MnlI	CCTC	6 cut(s)	29, 125, 253, 474, 550, 624
Mox20I	TGGCCA	1 cut(s)	287
Mph1103I	ATGCAT	1 cut(s)	658
MroXI	GAANNNNTTC	3 cut(s)	261, 884, 900
MscI	TGGCCA	1 cut(s)	287
MseI	TTAA	6 cut(s)	243, 291, 513, 791, 861, 915
MslI	CAYNNNNRTG	2 cut(s)	21, 706
Msp20I	TGGCCA	1 cut(s)	287
MspA1I	CMGCKG	2 cut(s)	221, 476
MspI	CCGG	3 cut(s)	168, 706, 800
MspR9I	CCNGG	3 cut(s)	169, 408, 801
MunI	CAATTG	1 cut(s)	173
MvaI	CCWGG	1 cut(s)	408
MwoI	GCNNNNNNNGC	5 cut(s)	99, 223, 332, 482, 844
NciI	CCSGG	2 cut(s)	169, 801
NcoI	CCATGG	1 cut(s)	623
NdeII	GATC	8 cut(s)	9, 193, 361, 577, 585, 601, 640, 736
NlaIII	CATG	6 cut(s)	53, 106, 592, 627, 772, 950
NlaIV	GGNNCC	3 cut(s)	136, 471, 561
NsiI	ATGCAT	1 cut(s)	658
PdmI	GAANNNNTTC	3 cut(s)	261, 884, 900
PfeI	GAWTC	4 cut(s)	278, 678, 796, 880
PinAI	ACCGGT	1 cut(s)	705
PkrI	GCNGC	4 cut(s)	216, 349, 503, 571
PshAI	GACNNNNGTC	1 cut(s)	419
PshBI	ATTAAT	1 cut(s)	915
Psp6I	CCWGG	1 cut(s)	406
PspFI	CCCAGC	1 cut(s)	476
PspGI	CCWGG	1 cut(s)	406
PspN4I	GGNNCC	3 cut(s)	136, 471, 561
PspPI	GGNCC	1 cut(s)	410
PstNI	CAGNNNCTG	1 cut(s)	569
PsuI	RGATCY	1 cut(s)	640
PvuII	CAGCTG	2 cut(s)	221, 476
RsaI	GTAC	1 cut(s)	124
RsaNI	GTAC	1 cut(s)	123
RseI	CAYNNNNRTG	2 cut(s)	21, 706
SaqAI	TTAA	6 cut(s)	243, 291, 513, 791, 861, 915
SatI	GCNGC	4 cut(s)	215, 348, 502, 570
Sau3AI	GATC	8 cut(s)	9, 193, 361, 577, 585, 601, 640, 736
Sau96I	GGNCC	1 cut(s)	410
ScrFI	CCNGG	3 cut(s)	169, 408, 801
SduI	GDGCHC	1 cut(s)	18
SexAI	ACCWGGT	1 cut(s)	406
SfaNI	GCATC	1 cut(s)	665
SinI	GGWCC	1 cut(s)	410
SmiMI	CAYNNNNRTG	2 cut(s)	21, 706
Sse9I	AATT	7 cut(s)	60, 173, 317, 696, 839, 912, 924
SsiI	CCGC	2 cut(s)	502, 726
SspMI	CTAG	1 cut(s)	386
StyD4I	CCNGG	3 cut(s)	167, 406, 799
StyI	CCWWGG	1 cut(s)	623
TaqI	TCGA	3 cut(s)	12, 196, 364
TasI	AATT	7 cut(s)	60, 173, 317, 696, 839, 912, 924
TauI	GCSGC	1 cut(s)	504
TfiI	GAWTC	4 cut(s)	278, 678, 796, 880
Tru1I	TTAA	6 cut(s)	243, 291, 513, 791, 861, 915
Tru9I	TTAA	6 cut(s)	243, 291, 513, 791, 861, 915
TscAI	CASTG	4 cut(s)	525, 723, 765, 837
TseI	GCWGC	3 cut(s)	214, 347, 569
TspDTI	ATGAA	1 cut(s)	38
TspGWI	ACGGA	1 cut(s)	671
TspRI	CASTG	4 cut(s)	525, 723, 765, 837
VpaK11BI	GGWCC	1 cut(s)	410
VspI	ATTAAT	1 cut(s)	915
XapI	RAATTY	2 cut(s)	317, 696
XmnI	GAANNNNTTC	3 cut(s)	261, 884, 900
XspI	CTAG	1 cut(s)	386
Zsp2I	ATGCAT	1 cut(s)	658

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.