Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr12

Orthogroup ID

OG0002598

Physical Location & Seq

Genomic Coordinates Forward (+)

29989936 .. 29991614

Gene Structure 1679 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD12G1223000.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 972 bp

ATGGCTCTGGAAGCCGTCGTTTTCCCTCAAGACCCATTTAGTTACACTGCTAACAAAGACCTCTACAACTTGTTAGGAGGAACTTTGAGCTATGTTGATGATCAGCAGCAAGCCTCTCTTGATTTTCTCGACTACCAAACAGACCAGAATTACCCTAACTATGGTTCTACGTATTCCTCACCGCCTTCAATGGTACCTCACTTCAACGAATTGCACCTCTCCAATCCAAACCCAGTTGCCAGCACTACAAACCCTACTGGTGATCAACCCGAATTTCAACTACCATTGGAGGACACAATCAACATGTCTAGAAGTTCTCGTGCGAAACGACGTCGTGCCAAGAGTAAAAAGAACGAGGAGGAGATTGAGAACCAGAGAATGACTCACATTGCAGTTGAGCGCAACAGGAGAAAACAGATGAATGAGTATCTCTCTGTGCTTCGATCGATAATGCCCGACTCGTACGTCCAAAGGGGAGACCAAGCATCAATCATTGGGGGTGCGATTAATTATGTGAAGGAGCTAGAGCAGGAAGTGCAATTCTTGGGCGTCCAAAAGCCAAATGATCGTGCGCCTTTTTCCGAATTCTTCACCTTCCCCCAGTACTCATCGAGGTCATCTACTAGTGATCATGAGTCTGCGGTGTCAGCCATGGCGGAGCTGCCGCTGCTCGAGTGCAGGTTGAGCAAAATTGCAGCTGACATAGAAGTGACAATGGTGGAGAGCCATGCAAGCCTCAAAGTAAGATCCAAAAAGGTCCCAAAGCAACTCTTGAAAATTGTTTCAGGGTTGCATGATATGCACCTTACCGTTCTCCATCTCAATGTTGTCACTGTTGATGATATTGTCCTCTATTCTCTCAGTCTCAAGGTAGAAGATGAGTGCATGCTGACTTCAGTGGATGAGATTGCAACAGCTGTCCATGAGATGCTAGCTAGGATTCAGGAAGAGGCAATGCTGAATTTGAACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HLH

Protein Analysis

324

Amino Acids

36.49

Weight (kDa)

5.18

Isoelectric Point (pI)

56.18

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HLH	PF00010	125 - 176	3.8e-13	Helix-loop-helix DNA-binding domain
bHLH-TF_ACT-like_plant	PF22754	234 - 310	4e-06	Plant bHLH transcription factor, ACT-like domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002598)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G22490 AT1G22490 AT1G72210 AT1G72210
fragaria_vesca	FvH4_5g36240 FvH4_5g36240 FvH4_6g05440 FvH4_6g05440
malus_domestica	MD04G1208700.v1.1 MD08G1190500.v1.1 MD12G1223000.v1.1 MD15G1377800.v1.1
prunus_persica	Prupe.1G524500_v2.0.a1 Prupe.1G524500_v2.0.a1 Prupe.6G329600_v2.0.a1 Prupe.6G329600_v2.0.a1
pyrus_communis	pycom04g18480 pycom08g16370 pycom12g20890 pycom15g33850
rosa_chinensis	RchiOBHm_Chr3g0454211 RchiOBHm_Chr7g0238141
rosa_laevigata	RLG00000000939 RLG00000025476
rosa_multiflora	Rmu_sc0007628.1_g000004
rosa_roxburghii	Rroxscaffold_165G00436990 Rroxscaffold_3G00223340 Rroxscaffold_6G00425370
rosa_rugosa	Rorug02G0653500 Rorug07G0310500
rosa_samantha	Rh3AG056600 Rh3BG058100 Rh3CG057300 Rh3DG058600 Rh7AG466000 Rh7BG436700 Rh7CG484000 Rh7DG452400
rosa_wichuraiana	Rw3G004360 Rw7G038590

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	464
AatII	GACGTC	1 cut(s)	334
Acc36I	ACCTGC	1 cut(s)	669
Acc65I	GGTACC	1 cut(s)	193
AccB1I	GGYRCC	1 cut(s)	193
AciI	CCGC	4 cut(s)	182, 641, 656, 665
AclWI	GGATC	1 cut(s)	741
AcsI	RAATTY	3 cut(s)	272, 584, 961
AcuI	CTGAAG	1 cut(s)	879
AcyI	GRCGYC	2 cut(s)	331, 549
AfaI	GTAC	3 cut(s)	195, 464, 605
AfiI	CCNNNNNNNGG	1 cut(s)	161
AflIII	ACRYGT	1 cut(s)	303
AgsI	TTSAA	5 cut(s)	189, 205, 278, 775, 967
AhlI	ACTAGT	1 cut(s)	623
AluBI	AGCT	6 cut(s)	90, 523, 661, 698, 917, 935
AluI	AGCT	6 cut(s)	90, 523, 661, 698, 917, 935
Alw26I	GTCTC	2 cut(s)	471, 869
AlwI	GGATC	1 cut(s)	741
Ama87I	CYCGRG	1 cut(s)	671
ApeKI	GCWGC	4 cut(s)	106, 661, 667, 695
ApoI	RAATTY	3 cut(s)	272, 584, 961
AseI	ATTAAT	1 cut(s)	507
Asp718I	GGTACC	1 cut(s)	193
AspLEI	GCGC	2 cut(s)	402, 574
AspS9I	GGNCC	1 cut(s)	757
AsuHPI	GGTGA	3 cut(s)	171, 272, 583
AsuNHI	GCTAGC	1 cut(s)	931
AvaI	CYCGRG	1 cut(s)	671
AvaII	GGWCC	1 cut(s)	757
BanI	GGYRCC	1 cut(s)	193
BauI	CACGAG	1 cut(s)	318
BbvI	GCAGC	4 cut(s)	118, 648, 654, 707
BccI	CCATC	1 cut(s)	825
BclI	TGATCA	3 cut(s)	100, 262, 628
BcoDI	GTCTC	2 cut(s)	471, 869
BcuI	ACTAGT	1 cut(s)	623
BfaI	CTAG	5 cut(s)	309, 524, 624, 932, 936
BfuAI	ACCTGC	1 cut(s)	669
BisI	GCNGC	5 cut(s)	107, 662, 665, 668, 696
BlsI	GCNGC	5 cut(s)	108, 663, 666, 669, 697
BmcAI	AGTACT	1 cut(s)	605
Bme18I	GGWCC	1 cut(s)	757
BmeT110I	CYCGRG	1 cut(s)	671
BmgT120I	GGNCC	1 cut(s)	757
BmiI	GGNNCC	2 cut(s)	195, 759
BmrI	ACTGGG	2 cut(s)	227, 595
BmsI	GCATC	2 cut(s)	494, 918
BmtI	GCTAGC	1 cut(s)	935
BmuI	ACTGGG	2 cut(s)	227, 595
BplI	GAGNNNNNCTC	4 cut(s)	367, 399, 416, 448
BpuEI	CTTGAG	2 cut(s)	12, 851
Bsa29I	ATCGAT	1 cut(s)	446
BsaAI	YACGTR	1 cut(s)	171
BsaHI	GRCGYC	2 cut(s)	331, 549
BsaI	GGTCTC	1 cut(s)	471
BsaJI	CCNNGG	1 cut(s)	651
Bsc4I	CCNNNNNNNGG	1 cut(s)	161
Bse1I	ACTGG	3 cut(s)	233, 262, 601
Bse3DI	GCAATG	2 cut(s)	387, 960
BseCI	ATCGAT	1 cut(s)	446
BseDI	CCNNGG	1 cut(s)	651
BseGI	GGATG	1 cut(s)	907
BseLI	CCNNNNNNNGG	1 cut(s)	161
BseMI	GCAATG	2 cut(s)	387, 960
BseMII	CTCAG	1 cut(s)	874
BseNI	ACTGG	3 cut(s)	233, 262, 601
BseRI	GAGGAG	2 cut(s)	371, 374
BseXI	GCAGC	4 cut(s)	118, 648, 654, 707
BsgI	GTGCAG	1 cut(s)	697
Bsh1285I	CGRYCG	1 cut(s)	446
BshNI	GGYRCC	1 cut(s)	193
BshVI	ATCGAT	1 cut(s)	446
BsiEI	CGRYCG	1 cut(s)	446
BsiHKCI	CYCGRG	1 cut(s)	671
BsiWI	CGTACG	1 cut(s)	462
BslFI	GGGAC	1 cut(s)	743
BslI	CCNNNNNNNGG	1 cut(s)	161
BsmAI	GTCTC	2 cut(s)	471, 869
BsmFI	GGGAC	1 cut(s)	743
Bso31I	GGTCTC	1 cut(s)	471
BsoBI	CYCGRG	1 cut(s)	671
Bsp143I	GATC	6 cut(s)	100, 262, 443, 565, 628, 746
Bsp19I	CCATGG	1 cut(s)	651
BspACI	CCGC	4 cut(s)	182, 641, 656, 665
BspCNI	CTCAG	1 cut(s)	873
BspDI	ATCGAT	1 cut(s)	446
BspHI	TCATGA	1 cut(s)	631
BspLI	GGNNCC	2 cut(s)	195, 759
BspMI	ACCTGC	1 cut(s)	669
BspOI	GCTAGC	1 cut(s)	935
BspPI	GGATC	1 cut(s)	741
BspT107I	GGYRCC	1 cut(s)	193
BspTNI	GGTCTC	1 cut(s)	471
BsrDI	GCAATG	2 cut(s)	387, 960
BsrI	ACTGG	3 cut(s)	233, 262, 601
BssECI	CCNNGG	1 cut(s)	651
BssMI	GATC	6 cut(s)	100, 262, 443, 565, 628, 746
BssNI	GRCGYC	2 cut(s)	331, 549
BssSI	CACGAG	1 cut(s)	318
BssT1I	CCWWGG	1 cut(s)	651
Bst2BI	CACGAG	1 cut(s)	318
Bst4CI	ACNGT	2 cut(s)	811, 835
Bst6I	CTCTTC	1 cut(s)	942
BstACI	GRCGYC	2 cut(s)	331, 549
BstAPI	GCANNNNNTGC	2 cut(s)	535, 799
BstBAI	YACGTR	1 cut(s)	171
BstC8I	GCNNGC	5 cut(s)	111, 241, 733, 887, 933
BstDEI	CTNAG	1 cut(s)	860
BstDSI	CCRYGG	1 cut(s)	651
BstF5I	GGATG	1 cut(s)	907
BstHHI	GCGC	2 cut(s)	402, 574
BstKTI	GATC	6 cut(s)	103, 265, 446, 568, 631, 749
BstMAI	GTCTC	2 cut(s)	471, 869
BstMBI	GATC	6 cut(s)	100, 262, 443, 565, 628, 746
BstMCI	CGRYCG	1 cut(s)	446
BstMWI	GCNNNNNNNGC	7 cut(s)	11, 535, 647, 667, 684, 732, 799
BstNSI	RCATGY	2 cut(s)	307, 889
BstSNI	TACGTA	1 cut(s)	171
BstV1I	GCAGC	4 cut(s)	118, 648, 654, 707
BstX2I	RGATCY	1 cut(s)	746
BstYI	RGATCY	1 cut(s)	746
Bsu15I	ATCGAT	1 cut(s)	446
BsuTUI	ATCGAT	1 cut(s)	446
BtgI	CCRYGG	1 cut(s)	651
BtsCI	GGATG	1 cut(s)	907
BtsI	GCAGTG	1 cut(s)	45
BtsIMutI	CAGTG	3 cut(s)	45, 831, 903
BveI	ACCTGC	1 cut(s)	669
Cac8I	GCNNGC	5 cut(s)	111, 241, 733, 887, 933
CciI	TCATGA	1 cut(s)	631
CfoI	GCGC	2 cut(s)	402, 574
Cfr13I	GGNCC	1 cut(s)	757
ClaI	ATCGAT	1 cut(s)	446
CseI	GACGC	1 cut(s)	538
Csp6I	GTAC	3 cut(s)	194, 463, 604
CviAII	CATG	7 cut(s)	304, 632, 652, 728, 794, 886, 923
CviQI	GTAC	3 cut(s)	194, 463, 604
DdeI	CTNAG	1 cut(s)	860
DpnI	GATC	6 cut(s)	102, 264, 445, 567, 630, 748
DpnII	GATC	6 cut(s)	100, 262, 443, 565, 628, 746
DrdI	GACNNNNNNGTC	1 cut(s)	464
DseDI	GACNNNNNNGTC	1 cut(s)	464
Eam1104I	CTCTTC	1 cut(s)	942
EarI	CTCTTC	1 cut(s)	942
EciI	GGCGGA	1 cut(s)	671
Eco105I	TACGTA	1 cut(s)	171
Eco130I	CCWWGG	1 cut(s)	651
Eco31I	GGTCTC	1 cut(s)	471
Eco47I	GGWCC	1 cut(s)	757
Eco57I	CTGAAG	1 cut(s)	879
Eco88I	CYCGRG	1 cut(s)	671
EcoO109I	RGGNCCY	1 cut(s)	757
EcoRI	GAATTC	1 cut(s)	584
EcoT14I	CCWWGG	1 cut(s)	651
ErhI	CCWWGG	1 cut(s)	651
FaeI	CATG	7 cut(s)	307, 635, 655, 731, 797, 889, 926
FalI	AAGNNNNNCTT	4 cut(s)	102, 134, 755, 787
FaqI	GGGAC	1 cut(s)	743
FatI	CATG	7 cut(s)	303, 631, 651, 727, 793, 885, 922
FbaI	TGATCA	3 cut(s)	100, 262, 628
Fnu4HI	GCNGC	5 cut(s)	107, 662, 665, 668, 696
FokI	GGATG	1 cut(s)	914
Fsp4HI	GCNGC	5 cut(s)	107, 662, 665, 668, 696
FspBI	CTAG	5 cut(s)	309, 524, 624, 932, 936
GlaI	GCGC	2 cut(s)	401, 573
GluI	GCNGC	5 cut(s)	107, 662, 665, 668, 696
HgaI	GACGC	1 cut(s)	538
HhaI	GCGC	2 cut(s)	402, 574
Hin1I	GRCGYC	2 cut(s)	331, 549
Hin1II	CATG	7 cut(s)	307, 635, 655, 731, 797, 889, 926
Hin6I	GCGC	2 cut(s)	400, 572
HinP1I	GCGC	2 cut(s)	400, 572
HinfI	GANTC	4 cut(s)	382, 458, 635, 940
HphI	GGTGA	3 cut(s)	171, 272, 583
Hpy188I	TCNGA	1 cut(s)	583
Hpy188III	TCNNGA	8 cut(s)	8, 29, 119, 128, 309, 632, 772, 944
Hpy99I	CGWCG	3 cut(s)	20, 333, 336
HpyAV	CCTTC	3 cut(s)	195, 511, 604
HpyCH4III	ACNGT	2 cut(s)	811, 835
HpyCH4IV	ACGT	3 cut(s)	170, 331, 465
HpyF10VI	GCNNNNNNNGC	7 cut(s)	11, 535, 647, 667, 684, 732, 799
HpyF3I	CTNAG	1 cut(s)	860
HpySE526I	ACGT	3 cut(s)	170, 331, 465
Hsp92I	GRCGYC	2 cut(s)	331, 549
Hsp92II	CATG	7 cut(s)	307, 635, 655, 731, 797, 889, 926
HspAI	GCGC	2 cut(s)	400, 572
KpnI	GGTACC	1 cut(s)	197
Ksp22I	TGATCA	3 cut(s)	100, 262, 628
Kzo9I	GATC	6 cut(s)	100, 262, 443, 565, 628, 746
LmnI	GCTCC	2 cut(s)	520, 658
Lsp1109I	GCAGC	4 cut(s)	118, 648, 654, 707
LweI	GCATC	2 cut(s)	494, 918
MaeI	CTAG	5 cut(s)	309, 524, 624, 932, 936
MaeII	ACGT	3 cut(s)	170, 331, 465
MaeIII	GTNAC	3 cut(s)	41, 709, 829
MalI	GATC	6 cut(s)	102, 264, 445, 567, 630, 748
MboI	GATC	6 cut(s)	100, 262, 443, 565, 628, 746
MboII	GAAGA	3 cut(s)	580, 887, 959
MflI	RGATCY	1 cut(s)	746
MluCI	AATT	9 cut(s)	148, 209, 272, 508, 539, 584, 690, 777, 961
MlyI	GAGTC	3 cut(s)	376, 452, 644
MseI	TTAA	1 cut(s)	507
MslI	CAYNNNNRTG	2 cut(s)	707, 822
MspA1I	CMGCKG	3 cut(s)	667, 698, 917
MwoI	GCNNNNNNNGC	7 cut(s)	11, 535, 647, 667, 684, 732, 799
NcoI	CCATGG	1 cut(s)	651
NdeII	GATC	6 cut(s)	100, 262, 443, 565, 628, 746
NheI	GCTAGC	1 cut(s)	931
NlaIII	CATG	7 cut(s)	307, 635, 655, 731, 797, 889, 926
NlaIV	GGNNCC	2 cut(s)	195, 759
NmuCI	GTSAC	2 cut(s)	709, 829
NspI	RCATGY	2 cut(s)	307, 889
PaeI	GCATGC	1 cut(s)	889
PaeR7I	CTCGAG	1 cut(s)	671
PagI	TCATGA	1 cut(s)	631
PciI	ACATGT	1 cut(s)	303
PcsI	WCGNNNNNNNCGW	1 cut(s)	325
PfeI	GAWTC	1 cut(s)	940
Pfl23II	CGTACG	1 cut(s)	462
PkrI	GCNGC	5 cut(s)	108, 663, 666, 669, 697
Ple19I	CGATCG	1 cut(s)	446
PleI	GAGTC	3 cut(s)	376, 452, 643
PpsI	GAGTC	3 cut(s)	376, 452, 643
Ppu21I	YACGTR	1 cut(s)	171
PpuMI	RGGWCCY	1 cut(s)	757
PscI	ACATGT	1 cut(s)	303
PshBI	ATTAAT	1 cut(s)	507
Psp5II	RGGWCCY	1 cut(s)	757
PspLI	CGTACG	1 cut(s)	462
PspN4I	GGNNCC	2 cut(s)	195, 759
PspPI	GGNCC	1 cut(s)	757
PspPPI	RGGWCCY	1 cut(s)	757
PspXI	VCTCGAGB	1 cut(s)	671
PsuI	RGATCY	1 cut(s)	746
PvuI	CGATCG	1 cut(s)	446
PvuII	CAGCTG	2 cut(s)	698, 917
RsaI	GTAC	3 cut(s)	195, 464, 605
RsaNI	GTAC	3 cut(s)	194, 463, 604
RseI	CAYNNNNRTG	2 cut(s)	707, 822
SaqAI	TTAA	1 cut(s)	507
SatI	GCNGC	5 cut(s)	107, 662, 665, 668, 696
Sau3AI	GATC	6 cut(s)	100, 262, 443, 565, 628, 746
Sau96I	GGNCC	1 cut(s)	757
ScaI	AGTACT	1 cut(s)	605
SchI	GAGTC	3 cut(s)	376, 452, 644
SfaNI	GCATC	2 cut(s)	494, 918
Sfr274I	CTCGAG	1 cut(s)	671
SinI	GGWCC	1 cut(s)	757
SlaI	CTCGAG	1 cut(s)	671
SmiMI	CAYNNNNRTG	2 cut(s)	707, 822
SmlI	CTYRAG	3 cut(s)	27, 671, 866
SmoI	CTYRAG	3 cut(s)	27, 671, 866
SnaBI	TACGTA	1 cut(s)	171
SpeI	ACTAGT	1 cut(s)	623
SphI	GCATGC	1 cut(s)	889
Sse9I	AATT	9 cut(s)	148, 209, 272, 508, 539, 584, 690, 777, 961
SsiI	CCGC	4 cut(s)	182, 641, 656, 665
SspMI	CTAG	5 cut(s)	309, 524, 624, 932, 936
StyI	CCWWGG	1 cut(s)	651
TaaI	ACNGT	2 cut(s)	811, 835
TaiI	ACGT	3 cut(s)	173, 334, 468
TaqI	TCGA	5 cut(s)	129, 442, 446, 611, 672
TasI	AATT	9 cut(s)	148, 209, 272, 508, 539, 584, 690, 777, 961
TatI	WGTACW	1 cut(s)	603
TauI	GCSGC	1 cut(s)	667
TfiI	GAWTC	1 cut(s)	940
Tru1I	TTAA	1 cut(s)	507
Tru9I	TTAA	1 cut(s)	507
TscAI	CASTG	3 cut(s)	52, 838, 903
TseFI	GTSAC	2 cut(s)	709, 829
TseI	GCWGC	4 cut(s)	106, 661, 667, 695
Tsp45I	GTSAC	2 cut(s)	709, 829
TspDTI	ATGAA	1 cut(s)	434
TspRI	CASTG	3 cut(s)	52, 838, 903
VpaK11BI	GGWCC	1 cut(s)	757
VspI	ATTAAT	1 cut(s)	507
XapI	RAATTY	3 cut(s)	272, 584, 961
XbaI	TCTAGA	1 cut(s)	308
XceI	RCATGY	2 cut(s)	307, 889
XhoI	CTCGAG	1 cut(s)	671
XspI	CTAG	5 cut(s)	309, 524, 624, 932, 936
ZraI	GACGTC	1 cut(s)	332
ZrmI	AGTACT	1 cut(s)	605

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.