Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr1

Orthogroup ID

OG0002598

Physical Location & Seq

Genomic Coordinates Reverse (-)

8189829 .. 8192037

Gene Structure 2209 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000000939

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1020 bp

ATGGCATTAGAAGCCGTGGTTTACCCAAAAGACTACAACCCATTTAGCTATGTGTGCAAAGATTTCTACTCCCTTGCACCTTCTAACTGGGGCTATGATCTTAGCTTACAAGAGAATATTCAAGACAAAGCCCTTGTTGGACTTCTTGATCATCAGTATAACAACATACACCATCACCAAGGCAGTCTCATTGAAAATTGGGAGTATAACTGTTCATCATCTCCTCCTTCACTTCTGCAAAATGTGAAGGAATGGGATCCTCATTCCTCACCTGAGGCCTTGGAAACCCCGCCACCGCAACCGCCACCGGCAACAACAGGTAGACGCAAACGCCGTCGTACCAGAAGCAGCAAGAACAAAGAAGAAATGGAGAACCAACGCATGACCCACATTGTAGTGGAGCGCAACCGCCGCAAGCAAATGAACGAGTACCTCGCCGTCCTCCGCTCTTTGATGCCAACGTCTTATGTTCATAGGGGGGATCAAGCATCAATTATTGGGGGAGCAATTAACTTTGTGAAGGAGCTAGAGCAACTGTTGCAGTCCATGGACGGCAGCCATAAGAGGGCTACCAAGCCAGAACAAGTACCTTTGGCAGAGTTCTTTACCTTTCCACAGTTCTCCACACCTGCGACGACACAGTGTAACAGCAACACTTCATCATCGTCTTCGTCATCATCTGAGGGTATCCAAATAAACGACGAGCCGTCCTTGGCTCCTCGGAGCAACAATAACAACAACCAGTGGGCAGCTGCAGACATAGAAGTGACCATGGTGGACAGCCATGCCAATCTTAAGATATTGTCCAAGAAGAGGCCTAGGCAGTTGTTGAAGATGGTGGCCGGGTTTCAAAGTCTTGGGCTCAGTGTCCTTCACCTCAATGTCACCACTGTTGATGAAATGGTCCTCTACTCTGTTAGTGTTAAGATTGAAGAAGGGTGCCTGCTAAACACTGTGGATGAAATTGCAGCTGCTGTTAATGAAATGCTGCGCAGAATTCAAGAAGCTGGTTTTAGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HLH

Protein Analysis

340

Amino Acids

38.15

Weight (kDa)

6.22

Isoelectric Point (pI)

66.17

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HLH	PF00010	126 - 177	4.1e-11	Helix-loop-helix DNA-binding domain
bHLH-TF_ACT-like_plant	PF22754	253 - 328	1.7e-06	Plant bHLH transcription factor, ACT-like domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002598)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G22490 AT1G22490 AT1G72210 AT1G72210
fragaria_vesca	FvH4_5g36240 FvH4_5g36240 FvH4_6g05440 FvH4_6g05440
malus_domestica	MD04G1208700.v1.1 MD08G1190500.v1.1 MD12G1223000.v1.1 MD15G1377800.v1.1
prunus_persica	Prupe.1G524500_v2.0.a1 Prupe.1G524500_v2.0.a1 Prupe.6G329600_v2.0.a1 Prupe.6G329600_v2.0.a1
pyrus_communis	pycom04g18480 pycom08g16370 pycom12g20890 pycom15g33850
rosa_chinensis	RchiOBHm_Chr3g0454211 RchiOBHm_Chr7g0238141
rosa_laevigata	RLG00000000939 RLG00000025476
rosa_multiflora	Rmu_sc0007628.1_g000004
rosa_roxburghii	Rroxscaffold_165G00436990 Rroxscaffold_3G00223340 Rroxscaffold_6G00425370
rosa_rugosa	Rorug02G0653500 Rorug07G0310500
rosa_samantha	Rh3AG056600 Rh3BG058100 Rh3CG057300 Rh3DG058600 Rh7AG466000 Rh7BG436700 Rh7CG484000 Rh7DG452400
rosa_wichuraiana	Rw3G004360 Rw7G038590

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	637
Acc16I	TGCGCA	1 cut(s)	992
Acc36I	ACCTGC	1 cut(s)	637
AccB1I	GGYRCC	1 cut(s)	939
AccBSI	CCGCTC	1 cut(s)	447
AccI	GTMKAC	1 cut(s)	322
AciI	CCGC	6 cut(s)	290, 296, 302, 409, 412, 445
AclWI	GGATC	3 cut(s)	251, 264, 489
AcoI	YGGCCR	1 cut(s)	840
AcsI	RAATTY	1 cut(s)	996
AfaI	GTAC	3 cut(s)	340, 431, 588
AfiI	CCNNNNNNNGG	2 cut(s)	565, 813
AflII	CTTAAG	1 cut(s)	794
AgsI	TTSAA	6 cut(s)	122, 194, 832, 851, 932, 1001
AhdI	GACNNNNNGTC	1 cut(s)	706
AluBI	AGCT	7 cut(s)	48, 105, 526, 752, 971, 1007, 1017
AluI	AGCT	7 cut(s)	48, 105, 526, 752, 971, 1007, 1017
Alw26I	GTCTC	1 cut(s)	191
AlwI	GGATC	3 cut(s)	251, 264, 489
AlwNI	CAGNNNCTG	1 cut(s)	974
AoxI	GGCC	3 cut(s)	276, 815, 840
ApeKI	GCWGC	7 cut(s)	348, 555, 749, 752, 968, 971, 988
ApoI	RAATTY	1 cut(s)	996
AspA2I	CCTAGG	1 cut(s)	818
AspLEI	GCGC	2 cut(s)	405, 993
AspS9I	GGNCC	1 cut(s)	904
AsuC2I	CCSGG	1 cut(s)	844
AsuHPI	GGTGA	4 cut(s)	167, 261, 866, 877
AvaII	GGWCC	1 cut(s)	904
AvrII	CCTAGG	1 cut(s)	818
AxyI	CCTNAGG	1 cut(s)	273
BamHI	GGATCC	1 cut(s)	256
BanI	GGYRCC	1 cut(s)	939
BanII	GRGCYC	1 cut(s)	864
BbsI	GAAGAC	1 cut(s)	660
BbvI	GCAGC	7 cut(s)	360, 567, 739, 761, 958, 975, 980
BccI	CCATC	2 cut(s)	180, 829
BceAI	ACGGC	4 cut(s)	318, 422, 568, 691
BciVI	GTATCC	1 cut(s)	698
BclI	TGATCA	1 cut(s)	148
BcnI	CCSGG	1 cut(s)	844
BcoDI	GTCTC	1 cut(s)	191
BfaI	CTAG	2 cut(s)	527, 819
BfmI	CTRYAG	1 cut(s)	753
BfrI	CTTAAG	1 cut(s)	794
BfuAI	ACCTGC	1 cut(s)	637
BfuI	GTATCC	1 cut(s)	698
BisI	GCNGC	8 cut(s)	349, 412, 556, 750, 753, 969, 972, 989
BlnI	CCTAGG	1 cut(s)	818
BlsI	GCNGC	8 cut(s)	350, 413, 557, 751, 754, 970, 973, 990
Bme1390I	CCNGG	1 cut(s)	844
Bme18I	GGWCC	1 cut(s)	904
BmeRI	GACNNNNNGTC	1 cut(s)	706
BmgT120I	GGNCC	1 cut(s)	904
BmiI	GGNNCC	3 cut(s)	258, 717, 941
BmrFI	CCNGG	1 cut(s)	844
BmrI	ACTGGG	1 cut(s)	97
BmsI	GCATC	2 cut(s)	444, 497
BmuI	ACTGGG	1 cut(s)	97
BpiI	GAAGAC	1 cut(s)	660
BpuMI	CCSGG	1 cut(s)	844
BsaJI	CCNNGG	8 cut(s)	15, 178, 279, 546, 711, 719, 771, 818
Bsc4I	CCNNNNNNNGG	2 cut(s)	565, 813
Bse118I	RCCGGY	1 cut(s)	307
Bse1I	ACTGG	2 cut(s)	92, 742
Bse21I	CCTNAGG	1 cut(s)	273
BseDI	CCNNGG	8 cut(s)	15, 178, 279, 546, 711, 719, 771, 818
BseGI	GGATG	1 cut(s)	964
BseLI	CCNNNNNNNGG	2 cut(s)	565, 813
BseMII	CTCAG	3 cut(s)	264, 672, 877
BseNI	ACTGG	2 cut(s)	92, 742
BseRI	GAGGAG	2 cut(s)	213, 708
BseXI	GCAGC	7 cut(s)	360, 567, 739, 761, 958, 975, 980
BshFI	GGCC	3 cut(s)	278, 817, 842
BshNI	GGYRCC	1 cut(s)	939
BsiSI	CCGG	2 cut(s)	308, 843
BslI	CCNNNNNNNGG	2 cut(s)	565, 813
BsmAI	GTCTC	1 cut(s)	191
BsnI	GGCC	3 cut(s)	278, 817, 842
Bsp1286I	GDGCHC	1 cut(s)	864
Bsp143I	GATC	4 cut(s)	97, 148, 256, 481
Bsp19I	CCATGG	2 cut(s)	546, 771
BspACI	CCGC	6 cut(s)	290, 296, 302, 409, 412, 445
BspANI	GGCC	3 cut(s)	278, 817, 842
BspCNI	CTCAG	3 cut(s)	265, 673, 876
BspLI	GGNNCC	3 cut(s)	258, 717, 941
BspMAI	CTGCAG	1 cut(s)	757
BspMI	ACCTGC	1 cut(s)	637
BspPI	GGATC	3 cut(s)	251, 264, 489
BspT107I	GGYRCC	1 cut(s)	939
BspTI	CTTAAG	1 cut(s)	794
BsrBI	CCGCTC	1 cut(s)	447
BsrFI	RCCGGY	1 cut(s)	307
BsrI	ACTGG	2 cut(s)	92, 742
BssAI	RCCGGY	1 cut(s)	307
BssECI	CCNNGG	8 cut(s)	15, 178, 279, 546, 711, 719, 771, 818
BssMI	GATC	4 cut(s)	97, 148, 256, 481
BssT1I	CCWWGG	6 cut(s)	178, 279, 546, 711, 771, 818
Bst4CI	ACNGT	6 cut(s)	212, 537, 618, 642, 892, 955
Bst6I	CTCTTC	1 cut(s)	806
BstAFI	CTTAAG	1 cut(s)	794
BstAPI	GCANNNNNTGC	1 cut(s)	538
BstC8I	GCNNGC	2 cut(s)	416, 944
BstDEI	CTNAG	4 cut(s)	101, 273, 681, 863
BstDSI	CCRYGG	3 cut(s)	15, 546, 771
BstF5I	GGATG	1 cut(s)	964
BstHHI	GCGC	2 cut(s)	405, 993
BstKTI	GATC	4 cut(s)	100, 151, 259, 484
BstMAI	GTCTC	1 cut(s)	191
BstMBI	GATC	4 cut(s)	97, 148, 256, 481
BstMWI	GCNNNNNNNGC	4 cut(s)	11, 54, 411, 538
BstSCI	CCNGG	1 cut(s)	842
BstSFI	CTRYAG	1 cut(s)	753
BstV1I	GCAGC	7 cut(s)	360, 567, 739, 761, 958, 975, 980
BstV2I	GAAGAC	1 cut(s)	660
BstX2I	RGATCY	1 cut(s)	256
BstYI	RGATCY	1 cut(s)	256
Bsu36I	CCTNAGG	1 cut(s)	273
BsuI	GTATCC	1 cut(s)	698
BsuRI	GGCC	3 cut(s)	278, 817, 842
BtgI	CCRYGG	3 cut(s)	15, 546, 771
BtsCI	GGATG	1 cut(s)	964
BtsIMutI	CAGTG	5 cut(s)	647, 749, 871, 888, 951
BveI	ACCTGC	1 cut(s)	637
Cac8I	GCNNGC	2 cut(s)	416, 944
CaiI	CAGNNNCTG	1 cut(s)	974
CfoI	GCGC	2 cut(s)	405, 993
Cfr10I	RCCGGY	1 cut(s)	307
Cfr13I	GGNCC	1 cut(s)	904
CseI	GACGC	1 cut(s)	333
Csp6I	GTAC	3 cut(s)	339, 430, 587
CviAII	CATG	4 cut(s)	382, 547, 772, 785
CviQI	GTAC	3 cut(s)	339, 430, 587
DdeI	CTNAG	4 cut(s)	101, 273, 681, 863
DpnI	GATC	4 cut(s)	99, 150, 258, 483
DpnII	GATC	4 cut(s)	97, 148, 256, 481
DriI	GACNNNNNGTC	1 cut(s)	706
EaeI	YGGCCR	1 cut(s)	840
Eam1104I	CTCTTC	1 cut(s)	806
Eam1105I	GACNNNNNGTC	1 cut(s)	706
EarI	CTCTTC	1 cut(s)	806
Eco130I	CCWWGG	6 cut(s)	178, 279, 546, 711, 771, 818
Eco147I	AGGCCT	2 cut(s)	278, 817
Eco24I	GRGCYC	1 cut(s)	864
Eco47I	GGWCC	1 cut(s)	904
Eco81I	CCTNAGG	1 cut(s)	273
EcoRI	GAATTC	1 cut(s)	996
EcoT14I	CCWWGG	6 cut(s)	178, 279, 546, 711, 771, 818
EcoT38I	GRGCYC	1 cut(s)	864
ErhI	CCWWGG	6 cut(s)	178, 279, 546, 711, 771, 818
FaeI	CATG	4 cut(s)	385, 550, 775, 788
FatI	CATG	4 cut(s)	381, 546, 771, 784
FauI	CCCGC	1 cut(s)	297
FbaI	TGATCA	1 cut(s)	148
FblI	GTMKAC	1 cut(s)	322
Fnu4HI	GCNGC	8 cut(s)	349, 412, 556, 750, 753, 969, 972, 989
FokI	GGATG	1 cut(s)	971
FriOI	GRGCYC	1 cut(s)	864
Fsp4HI	GCNGC	8 cut(s)	349, 412, 556, 750, 753, 969, 972, 989
FspBI	CTAG	2 cut(s)	527, 819
FspI	TGCGCA	1 cut(s)	992
GlaI	GCGC	2 cut(s)	404, 992
GluI	GCNGC	8 cut(s)	349, 412, 556, 750, 753, 969, 972, 989
HaeIII	GGCC	3 cut(s)	278, 817, 842
HapII	CCGG	2 cut(s)	308, 843
HgaI	GACGC	1 cut(s)	333
HhaI	GCGC	2 cut(s)	405, 993
Hin1II	CATG	4 cut(s)	385, 550, 775, 788
Hin6I	GCGC	2 cut(s)	403, 991
HinP1I	GCGC	2 cut(s)	403, 991
HpaII	CCGG	2 cut(s)	308, 843
HphI	GGTGA	4 cut(s)	167, 261, 866, 877
Hpy166II	GTNNAC	3 cut(s)	22, 323, 778
Hpy188I	TCNGA	2 cut(s)	682, 723
Hpy188III	TCNNGA	3 cut(s)	122, 146, 1001
Hpy8I	GTNNAC	3 cut(s)	22, 323, 778
Hpy99I	CGWCG	3 cut(s)	339, 637, 704
HpyAV	CCTTC	6 cut(s)	90, 237, 241, 514, 881, 929
HpyCH4III	ACNGT	6 cut(s)	212, 537, 618, 642, 892, 955
HpyCH4IV	ACGT	1 cut(s)	461
HpyCH4V	TGCA	6 cut(s)	57, 77, 238, 541, 755, 968
HpyF10VI	GCNNNNNNNGC	4 cut(s)	11, 54, 411, 538
HpyF3I	CTNAG	4 cut(s)	101, 273, 681, 863
HpySE526I	ACGT	1 cut(s)	461
Hsp92II	CATG	4 cut(s)	385, 550, 775, 788
HspAI	GCGC	2 cut(s)	403, 991
Ksp22I	TGATCA	1 cut(s)	148
Kzo9I	GATC	4 cut(s)	97, 148, 256, 481
LmnI	GCTCC	5 cut(s)	400, 503, 523, 721, 723
Lsp1109I	GCAGC	7 cut(s)	360, 567, 739, 761, 958, 975, 980
LweI	GCATC	2 cut(s)	444, 497
MaeI	CTAG	2 cut(s)	527, 819
MaeII	ACGT	1 cut(s)	461
MaeIII	GTNAC	3 cut(s)	644, 766, 883
MalI	GATC	4 cut(s)	99, 150, 258, 483
MbiI	CCGCTC	1 cut(s)	447
MboI	GATC	4 cut(s)	97, 148, 256, 481
MboII	GAAGA	5 cut(s)	374, 660, 823, 844, 944
MflI	RGATCY	1 cut(s)	256
MhlI	GDGCHC	1 cut(s)	864
MluCI	AATT	5 cut(s)	196, 492, 507, 963, 996
MmeI	TCCRAC	1 cut(s)	118
MseI	TTAA	4 cut(s)	510, 795, 924, 978
MslI	CAYNNNNRTG	3 cut(s)	395, 764, 879
MspA1I	CMGCKG	2 cut(s)	752, 971
MspCI	CTTAAG	1 cut(s)	794
MspI	CCGG	2 cut(s)	308, 843
MspR9I	CCNGG	1 cut(s)	844
MwoI	GCNNNNNNNGC	4 cut(s)	11, 54, 411, 538
NciI	CCSGG	1 cut(s)	844
NcoI	CCATGG	2 cut(s)	546, 771
NdeII	GATC	4 cut(s)	97, 148, 256, 481
NlaIII	CATG	4 cut(s)	385, 550, 775, 788
NlaIV	GGNNCC	3 cut(s)	258, 717, 941
NmuCI	GTSAC	2 cut(s)	766, 883
NsbI	TGCGCA	1 cut(s)	992
PaqCI	CACCTGC	1 cut(s)	637
PceI	AGGCCT	2 cut(s)	278, 817
PcsI	WCGNNNNNNNCGW	1 cut(s)	331
PkrI	GCNGC	8 cut(s)	350, 413, 557, 751, 754, 970, 973, 990
PspN4I	GGNNCC	3 cut(s)	258, 717, 941
PspPI	GGNCC	1 cut(s)	904
PstI	CTGCAG	1 cut(s)	757
PstNI	CAGNNNCTG	1 cut(s)	974
PsuI	RGATCY	1 cut(s)	256
PvuII	CAGCTG	2 cut(s)	752, 971
RsaI	GTAC	3 cut(s)	340, 431, 588
RsaNI	GTAC	3 cut(s)	339, 430, 587
RseI	CAYNNNNRTG	3 cut(s)	395, 764, 879
SaqAI	TTAA	4 cut(s)	510, 795, 924, 978
SatI	GCNGC	8 cut(s)	349, 412, 556, 750, 753, 969, 972, 989
Sau3AI	GATC	4 cut(s)	97, 148, 256, 481
Sau96I	GGNCC	1 cut(s)	904
ScrFI	CCNGG	1 cut(s)	844
SduI	GDGCHC	1 cut(s)	864
SfaNI	GCATC	2 cut(s)	444, 497
SfcI	CTRYAG	1 cut(s)	753
SinI	GGWCC	1 cut(s)	904
SmiMI	CAYNNNNRTG	3 cut(s)	395, 764, 879
SmlI	CTYRAG	1 cut(s)	794
SmoI	CTYRAG	1 cut(s)	794
Sse9I	AATT	5 cut(s)	196, 492, 507, 963, 996
SseBI	AGGCCT	2 cut(s)	278, 817
SsiI	CCGC	6 cut(s)	290, 296, 302, 409, 412, 445
SspI	AATATT	1 cut(s)	118
SspMI	CTAG	2 cut(s)	527, 819
StuI	AGGCCT	2 cut(s)	278, 817
StyD4I	CCNGG	1 cut(s)	842
StyI	CCWWGG	6 cut(s)	178, 279, 546, 711, 771, 818
TaaI	ACNGT	6 cut(s)	212, 537, 618, 642, 892, 955
TaiI	ACGT	1 cut(s)	464
TasI	AATT	5 cut(s)	196, 492, 507, 963, 996
TauI	GCSGC	1 cut(s)	414
Tru1I	TTAA	4 cut(s)	510, 795, 924, 978
Tru9I	TTAA	4 cut(s)	510, 795, 924, 978
TscAI	CASTG	5 cut(s)	647, 749, 871, 895, 958
TseFI	GTSAC	2 cut(s)	766, 883
TseI	GCWGC	7 cut(s)	348, 555, 749, 752, 968, 971, 988
Tsp45I	GTSAC	2 cut(s)	766, 883
TspDTI	ATGAA	7 cut(s)	204, 437, 461, 648, 912, 975, 996
TspRI	CASTG	5 cut(s)	647, 749, 871, 895, 958
Vha464I	CTTAAG	1 cut(s)	794
VpaK11BI	GGWCC	1 cut(s)	904
XapI	RAATTY	1 cut(s)	996
XmaJI	CCTAGG	1 cut(s)	818
XmiI	GTMKAC	1 cut(s)	322
XspI	CTAG	2 cut(s)	527, 819

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.