Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0002598

Physical Location & Seq

Genomic Coordinates Forward (+)

27179458 .. 27182456

Gene Structure 2999 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G72210.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 963 bp

ATGGCCTTGGAGGCTGTAGTTTACCCGCAAGATCCGTTCTCCTACATCTCTTGCAAAGATTTTCCGTTTTACGACTTATACTTTCAAGAAGAAGAAGATCAAGATCCACAAGATACTAAGAACAACATTAAGCTAGGGCAAGGACAAGGACATGGTTTTGCGAGTAATAATTACAACGGTAGAACCGGAGATTATAGTGATGATTATAATTACAACGAAGAGGATCTCCAATGGCCACGAGACCTTCCTTATGGATCTGCCGTCGACACCGAGAGCCAGCCTCCACCGTCGGATGTGGCGGCGGGAGGAGGGAGGAGGAAAAGGAGGAGGACGAGGAGTAGCAAGAACAAAGAAGAGATCGAGAACCAGAGGATGACTCACATCGCCGTTGAAAGAAATCGCCGGAAACAGATGAACGAGTACCTCGCCGTTCTCCGGTCTCTCATGCCACCTTATTATGCTCAAAGGGGAGATCAAGCATCGATAGTAGGCGGAGCCATTAACTACTTAAAGGAGCTTGAGCATCATTTACAATCAATGGAACCTCCGGTTAAGACCGCCACAGAAGACACCGGAGCCGGCCACGACCAGACCAAAACAACCTCGGCTAGTTCGTCGGGACCATTCTCGGATTTCTTTGCATTTCCTCAGTACTCGAACCGGCCTACCTCTGCGGCGGCGGCTGAGGGGATGGCGGAGATAGAGGTAACGATGGTAGAGAGCCATGCGAGTCTGAAAATACTTGCGAAAAAGAGACCGAGACAGCTTCTTAAACTGGTCTCATCGATACAGAGCCTAAGGCTCACTCTTCTCCATCTAAACGTCACAACTCGAGACGACTCCGTCCTCTATTCCATCAGCGTCAAGGTTGAAGAAGGGAGCCAATTGAATACAGTAGAAGATATTGCAGCAGCTGTGAATCAAATCCTAAGGAGGATCGAAGAAGAGTCATCCTTTAGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HLH

Protein Analysis

320

Amino Acids

35.97

Weight (kDa)

5.31

Isoelectric Point (pI)

70.72

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HLH	PF00010	123 - 174	1.2e-13	Helix-loop-helix DNA-binding domain
bHLH-TF_ACT-like_plant	PF22754	233 - 310	4.4e-06	Plant bHLH transcription factor, ACT-like domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002598)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G22490 AT1G22490 AT1G72210 AT1G72210
fragaria_vesca	FvH4_5g36240 FvH4_5g36240 FvH4_6g05440 FvH4_6g05440
malus_domestica	MD04G1208700.v1.1 MD08G1190500.v1.1 MD12G1223000.v1.1 MD15G1377800.v1.1
prunus_persica	Prupe.1G524500_v2.0.a1 Prupe.1G524500_v2.0.a1 Prupe.6G329600_v2.0.a1 Prupe.6G329600_v2.0.a1
pyrus_communis	pycom04g18480 pycom08g16370 pycom12g20890 pycom15g33850
rosa_chinensis	RchiOBHm_Chr3g0454211 RchiOBHm_Chr7g0238141
rosa_laevigata	RLG00000000939 RLG00000025476
rosa_multiflora	Rmu_sc0007628.1_g000004
rosa_roxburghii	Rroxscaffold_165G00436990 Rroxscaffold_3G00223340 Rroxscaffold_6G00425370
rosa_rugosa	Rorug02G0653500 Rorug07G0310500
rosa_samantha	Rh3AG056600 Rh3BG058100 Rh3CG057300 Rh3DG058600 Rh7AG466000 Rh7BG436700 Rh7CG484000 Rh7DG452400
rosa_wichuraiana	Rw3G004360 Rw7G038590

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	207
AasI	GACNNNNNNGTC	1 cut(s)	842
AccI	GTMKAC	1 cut(s)	264
AciI	CCGC	9 cut(s)	26, 299, 302, 492, 558, 674, 677, 680, 695
AclWI	GGATC	5 cut(s)	26, 98, 231, 262, 944
AcoI	YGGCCR	2 cut(s)	233, 580
AfaI	GTAC	2 cut(s)	422, 653
AfiI	CCNNNNNNNGG	1 cut(s)	435
AgsI	TTSAA	4 cut(s)	86, 392, 872, 889
AluBI	AGCT	5 cut(s)	133, 517, 766, 914, 960
AluI	AGCT	5 cut(s)	133, 517, 766, 914, 960
Alw26I	GTCTC	6 cut(s)	234, 444, 748, 754, 784, 828
AlwI	GGATC	5 cut(s)	26, 98, 231, 262, 944
AlwNI	CAGNNNCTG	1 cut(s)	914
Ama87I	CYCGRG	1 cut(s)	831
AoxI	GGCC	4 cut(s)	3, 233, 580, 662
ApeKI	GCWGC	2 cut(s)	908, 911
AspS9I	GGNCC	1 cut(s)	620
AvaI	CYCGRG	1 cut(s)	831
AvaII	GGWCC	1 cut(s)	620
AxyI	CCTNAGG	2 cut(s)	797, 929
BalI	TGGCCA	1 cut(s)	235
BauI	CACGAG	1 cut(s)	237
BbsI	GAAGAC	1 cut(s)	573
BbvCI	CCTCAGC	1 cut(s)	684
BbvI	GCAGC	2 cut(s)	920, 923
BccI	CCATC	4 cut(s)	685, 706, 822, 863
BceAI	ACGGC	3 cut(s)	245, 371, 413
BcoDI	GTCTC	6 cut(s)	234, 444, 748, 754, 784, 828
BfaI	CTAG	3 cut(s)	134, 609, 961
BfmI	CTRYAG	1 cut(s)	15
BglI	GCCNNNNNGGC	1 cut(s)	11
BisI	GCNGC	6 cut(s)	300, 675, 678, 681, 909, 912
BlsI	GCNGC	6 cut(s)	301, 676, 679, 682, 910, 913
BmcAI	AGTACT	1 cut(s)	653
Bme18I	GGWCC	1 cut(s)	620
BmeT110I	CYCGRG	1 cut(s)	831
BmgT120I	GGNCC	1 cut(s)	620
BmiI	GGNNCC	5 cut(s)	496, 543, 577, 621, 881
BmsI	GCATC	2 cut(s)	488, 532
BpiI	GAAGAC	1 cut(s)	573
BplI	GAGNNNNNCTC	4 cut(s)	265, 297, 361, 393
Bpu10I	CCTNAGC	1 cut(s)	684
BpuEI	CTTGAG	1 cut(s)	539
Bsa29I	ATCGAT	2 cut(s)	482, 785
BsaBI	GATNNNNATC	1 cut(s)	102
BsaI	GGTCTC	4 cut(s)	234, 444, 748, 784
BsaJI	CCNNGG	2 cut(s)	6, 603
BsaWI	WCCGGW	4 cut(s)	185, 435, 547, 572
Bsc4I	CCNNNNNNNGG	1 cut(s)	435
Bse118I	RCCGGY	2 cut(s)	578, 660
Bse1I	ACTGG	1 cut(s)	780
Bse21I	CCTNAGG	2 cut(s)	797, 929
Bse8I	GATNNNNATC	1 cut(s)	102
BseCI	ATCGAT	2 cut(s)	482, 785
BseDI	CCNNGG	2 cut(s)	6, 603
BseGI	GGATG	4 cut(s)	298, 378, 696, 950
BseJI	GATNNNNATC	1 cut(s)	102
BseLI	CCNNNNNNNGG	1 cut(s)	435
BseMII	CTCAG	2 cut(s)	662, 675
BseNI	ACTGG	1 cut(s)	780
BseRI	GAGGAG	4 cut(s)	321, 328, 340, 349
BseXI	GCAGC	2 cut(s)	920, 923
BshFI	GGCC	4 cut(s)	5, 235, 582, 664
BshVI	ATCGAT	2 cut(s)	482, 785
BsiHKCI	CYCGRG	1 cut(s)	831
BsiSI	CCGG	7 cut(s)	186, 403, 436, 548, 573, 579, 661
BslFI	GGGAC	1 cut(s)	633
BslI	CCNNNNNNNGG	1 cut(s)	435
BsmAI	GTCTC	6 cut(s)	234, 444, 748, 754, 784, 828
BsmBI	CGTCTC	1 cut(s)	828
BsmFI	GGGAC	1 cut(s)	633
BsnI	GGCC	4 cut(s)	5, 235, 582, 664
Bso31I	GGTCTC	4 cut(s)	234, 444, 748, 784
BsoBI	CYCGRG	1 cut(s)	831
Bsp143I	GATC	8 cut(s)	31, 97, 103, 223, 254, 357, 472, 936
BspACI	CCGC	9 cut(s)	26, 299, 302, 492, 558, 674, 677, 680, 695
BspANI	GGCC	4 cut(s)	5, 235, 582, 664
BspCNI	CTCAG	2 cut(s)	661, 676
BspDI	ATCGAT	2 cut(s)	482, 785
BspLI	GGNNCC	5 cut(s)	496, 543, 577, 621, 881
BspPI	GGATC	5 cut(s)	26, 98, 231, 262, 944
BspTNI	GGTCTC	4 cut(s)	234, 444, 748, 784
BsrFI	RCCGGY	2 cut(s)	578, 660
BsrI	ACTGG	1 cut(s)	780
BssAI	RCCGGY	2 cut(s)	578, 660
BssECI	CCNNGG	2 cut(s)	6, 603
BssMI	GATC	8 cut(s)	31, 97, 103, 223, 254, 357, 472, 936
BssSI	CACGAG	1 cut(s)	237
BssT1I	CCWWGG	1 cut(s)	6
Bst2BI	CACGAG	1 cut(s)	237
Bst4CI	ACNGT	3 cut(s)	179, 288, 895
Bst6I	CTCTTC	4 cut(s)	213, 348, 813, 939
BstC8I	GCNNGC	2 cut(s)	278, 580
BstDEI	CTNAG	5 cut(s)	117, 648, 684, 797, 929
BstF5I	GGATG	4 cut(s)	298, 378, 696, 950
BstKTI	GATC	8 cut(s)	34, 100, 106, 226, 257, 360, 475, 939
BstMAI	GTCTC	6 cut(s)	234, 444, 748, 754, 784, 828
BstMBI	GATC	8 cut(s)	31, 97, 103, 223, 254, 357, 472, 936
BstMWI	GCNNNNNNNGC	2 cut(s)	11, 680
BstSFI	CTRYAG	1 cut(s)	15
BstV1I	GCAGC	2 cut(s)	920, 923
BstV2I	GAAGAC	1 cut(s)	573
BstX2I	RGATCY	4 cut(s)	31, 103, 223, 254
BstYI	RGATCY	4 cut(s)	31, 103, 223, 254
Bsu15I	ATCGAT	2 cut(s)	482, 785
Bsu36I	CCTNAGG	2 cut(s)	797, 929
BsuRI	GGCC	4 cut(s)	5, 235, 582, 664
BsuTUI	ATCGAT	2 cut(s)	482, 785
BtgZI	GCGATG	1 cut(s)	367
BtsCI	GGATG	4 cut(s)	298, 378, 696, 950
Cac8I	GCNNGC	2 cut(s)	278, 580
CaiI	CAGNNNCTG	1 cut(s)	914
Cfr10I	RCCGGY	2 cut(s)	578, 660
Cfr13I	GGNCC	1 cut(s)	620
ClaI	ATCGAT	2 cut(s)	482, 785
CseI	GACGC	1 cut(s)	850
Csp6I	GTAC	2 cut(s)	421, 652
CviAII	CATG	3 cut(s)	152, 445, 725
CviQI	GTAC	2 cut(s)	421, 652
DdeI	CTNAG	5 cut(s)	117, 648, 684, 797, 929
DpnI	GATC	8 cut(s)	33, 99, 105, 225, 256, 359, 474, 938
DpnII	GATC	8 cut(s)	31, 97, 103, 223, 254, 357, 472, 936
DrdI	GACNNNNNNGTC	1 cut(s)	842
DseDI	GACNNNNNNGTC	1 cut(s)	842
EaeI	YGGCCR	2 cut(s)	233, 580
Eam1104I	CTCTTC	4 cut(s)	213, 348, 813, 939
EarI	CTCTTC	4 cut(s)	213, 348, 813, 939
EciI	GGCGGA	2 cut(s)	507, 710
Eco130I	CCWWGG	1 cut(s)	6
Eco31I	GGTCTC	4 cut(s)	234, 444, 748, 784
Eco47I	GGWCC	1 cut(s)	620
Eco81I	CCTNAGG	2 cut(s)	797, 929
Eco88I	CYCGRG	1 cut(s)	831
EcoT14I	CCWWGG	1 cut(s)	6
ErhI	CCWWGG	1 cut(s)	6
Esp3I	CGTCTC	1 cut(s)	828
FaeI	CATG	3 cut(s)	155, 448, 728
FaiI	YATR	8 cut(s)	79, 153, 195, 207, 252, 446, 459, 726
FaqI	GGGAC	1 cut(s)	633
FatI	CATG	3 cut(s)	151, 444, 724
FauI	CCCGC	2 cut(s)	33, 295
FblI	GTMKAC	1 cut(s)	264
Fnu4HI	GCNGC	6 cut(s)	300, 675, 678, 681, 909, 912
FokI	GGATG	4 cut(s)	305, 385, 703, 937
Fsp4HI	GCNGC	6 cut(s)	300, 675, 678, 681, 909, 912
FspBI	CTAG	3 cut(s)	134, 609, 961
GluI	GCNGC	6 cut(s)	300, 675, 678, 681, 909, 912
HaeIII	GGCC	4 cut(s)	5, 235, 582, 664
HapII	CCGG	7 cut(s)	186, 403, 436, 548, 573, 579, 661
HgaI	GACGC	1 cut(s)	850
Hin1II	CATG	3 cut(s)	155, 448, 728
HincII	GTYRAC	1 cut(s)	265
HindII	GTYRAC	1 cut(s)	265
HinfI	GANTC	5 cut(s)	376, 730, 839, 919, 947
HpaII	CCGG	7 cut(s)	186, 403, 436, 548, 573, 579, 661
Hpy166II	GTNNAC	2 cut(s)	22, 265
Hpy188I	TCNGA	3 cut(s)	292, 631, 735
Hpy188III	TCNNGA	5 cut(s)	86, 101, 361, 618, 833
Hpy8I	GTNNAC	2 cut(s)	22, 265
Hpy99I	CGWCG	3 cut(s)	266, 292, 619
HpyAV	CCTTC	2 cut(s)	254, 869
HpyCH4III	ACNGT	3 cut(s)	179, 288, 895
HpyCH4IV	ACGT	1 cut(s)	822
HpyCH4V	TGCA	3 cut(s)	54, 641, 908
HpyF10VI	GCNNNNNNNGC	2 cut(s)	11, 680
HpyF3I	CTNAG	5 cut(s)	117, 648, 684, 797, 929
HpySE526I	ACGT	1 cut(s)	822
Hsp92II	CATG	3 cut(s)	155, 448, 728
KroI	GCCGGC	1 cut(s)	578
KroNI	GCCGGC	1 cut(s)	580
Kzo9I	GATC	8 cut(s)	31, 97, 103, 223, 254, 357, 472, 936
LmnI	GCTCC	4 cut(s)	494, 514, 575, 879
Lsp1109I	GCAGC	2 cut(s)	920, 923
LweI	GCATC	2 cut(s)	488, 532
MaeI	CTAG	3 cut(s)	134, 609, 961
MaeII	ACGT	1 cut(s)	822
MaeIII	GTNAC	2 cut(s)	706, 823
MalI	GATC	8 cut(s)	33, 99, 105, 225, 256, 359, 474, 938
MboI	GATC	8 cut(s)	31, 97, 103, 223, 254, 357, 472, 936
MfeI	CAATTG	1 cut(s)	884
MflI	RGATCY	4 cut(s)	31, 103, 223, 254
MlsI	TGGCCA	1 cut(s)	235
MluCI	AATT	3 cut(s)	169, 208, 884
MluNI	TGGCCA	1 cut(s)	235
MlyI	GAGTC	4 cut(s)	370, 739, 833, 956
MmeI	TCCRAC	1 cut(s)	270
Mox20I	TGGCCA	1 cut(s)	235
MroNI	GCCGGC	1 cut(s)	578
MscI	TGGCCA	1 cut(s)	235
MseI	TTAA	5 cut(s)	129, 501, 509, 552, 771
Msp20I	TGGCCA	1 cut(s)	235
MspA1I	CMGCKG	1 cut(s)	914
MspI	CCGG	7 cut(s)	186, 403, 436, 548, 573, 579, 661
MunI	CAATTG	1 cut(s)	884
MwoI	GCNNNNNNNGC	2 cut(s)	11, 680
NaeI	GCCGGC	1 cut(s)	580
NdeII	GATC	8 cut(s)	31, 97, 103, 223, 254, 357, 472, 936
NgoMIV	GCCGGC	1 cut(s)	578
NlaIII	CATG	3 cut(s)	155, 448, 728
NlaIV	GGNNCC	5 cut(s)	496, 543, 577, 621, 881
NmeAIII	GCCGAG	1 cut(s)	584
NmuCI	GTSAC	1 cut(s)	823
PaeR7I	CTCGAG	1 cut(s)	831
PcsI	WCGNNNNNNNCGW	1 cut(s)	611
PdiI	GCCGGC	1 cut(s)	580
PfeI	GAWTC	1 cut(s)	919
PflFI	GACNNNGTC	1 cut(s)	842
PkrI	GCNGC	6 cut(s)	301, 676, 679, 682, 910, 913
PleI	GAGTC	4 cut(s)	370, 738, 833, 955
PpsI	GAGTC	4 cut(s)	370, 738, 833, 955
PsiI	TTATAA	1 cut(s)	207
PspN4I	GGNNCC	5 cut(s)	496, 543, 577, 621, 881
PspPI	GGNCC	1 cut(s)	620
PstNI	CAGNNNCTG	1 cut(s)	914
PsuI	RGATCY	4 cut(s)	31, 103, 223, 254
PsyI	GACNNNGTC	1 cut(s)	842
PvuII	CAGCTG	1 cut(s)	914
RsaI	GTAC	2 cut(s)	422, 653
RsaNI	GTAC	2 cut(s)	421, 652
SalI	GTCGAC	1 cut(s)	263
SaqAI	TTAA	5 cut(s)	129, 501, 509, 552, 771
SatI	GCNGC	6 cut(s)	300, 675, 678, 681, 909, 912
Sau3AI	GATC	8 cut(s)	31, 97, 103, 223, 254, 357, 472, 936
Sau96I	GGNCC	1 cut(s)	620
ScaI	AGTACT	1 cut(s)	653
SchI	GAGTC	4 cut(s)	370, 739, 833, 956
SfaNI	GCATC	2 cut(s)	488, 532
SfcI	CTRYAG	1 cut(s)	15
Sfr274I	CTCGAG	1 cut(s)	831
SinI	GGWCC	1 cut(s)	620
SlaI	CTCGAG	1 cut(s)	831
SmlI	CTYRAG	2 cut(s)	518, 831
SmoI	CTYRAG	2 cut(s)	518, 831
Sse9I	AATT	3 cut(s)	169, 208, 884
SsiI	CCGC	9 cut(s)	26, 299, 302, 492, 558, 674, 677, 680, 695
SspMI	CTAG	3 cut(s)	134, 609, 961
StyI	CCWWGG	1 cut(s)	6
TaaI	ACNGT	3 cut(s)	179, 288, 895
TaiI	ACGT	1 cut(s)	825
TaqI	TCGA	7 cut(s)	264, 360, 482, 656, 785, 832, 939
TaqII	GACCGA	1 cut(s)	772
TasI	AATT	3 cut(s)	169, 208, 884
TatI	WGTACW	1 cut(s)	651
TauI	GCSGC	4 cut(s)	302, 677, 680, 683
TfiI	GAWTC	1 cut(s)	919
Tru1I	TTAA	5 cut(s)	129, 501, 509, 552, 771
Tru9I	TTAA	5 cut(s)	129, 501, 509, 552, 771
TseFI	GTSAC	1 cut(s)	823
TseI	GCWGC	2 cut(s)	908, 911
Tsp45I	GTSAC	1 cut(s)	823
TspDTI	ATGAA	1 cut(s)	428
TspGWI	ACGGA	3 cut(s)	24, 54, 832
Tth111I	GACNNNGTC	1 cut(s)	842
VpaK11BI	GGWCC	1 cut(s)	620
XhoI	CTCGAG	1 cut(s)	831
XmiI	GTMKAC	1 cut(s)	264
XspI	CTAG	3 cut(s)	134, 609, 961
ZrmI	AGTACT	1 cut(s)	653

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.