Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr4

Orthogroup ID

OG0002598

Physical Location & Seq

Genomic Coordinates Forward (+)

20492819 .. 20494136

Gene Structure 1318 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom04g18480.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 963 bp

ATGGCTCTGGAAGCGGTCGTTTTCCCTCAAGATCCATTTAGTTGCACTAACAAAGACCTCTACAACTTGTTAGGAGGAAATTTGAGCTATGTCGATGATCAGCAGCAAGCCTCTCTTGATTTTCTCGGCTACCAAACAGACCAGAATTACCCTAACTATGATACTTATTCCTCACCGCCTTCAATGGTATCGCACTTCAGTGAATTGCACCTCTCCAATCCAAATCCAGTTGGCAGCACTATAAACCCTGCTGGTGATCAACCCGAATTTCAACTACCATTGGAGGACACAATCAACGTATCTAGCAGTACTCGTGCGAAACGACGTCGTGCGAAGAGGAAAAAGAACGAGGAGGAGATTGAGAACCAGAGAATGACTCACATTGCGGTTGAGCGCAACAGAAGAAAACAGATGAATGAGTATCTCTCCGTTCTTCGATCTATAATGCCCGAGTCGTACGTCCAAAGGGGTGATCAAGCATCAATTATTGGGGGTGCGATTAACTTTGTGAAGGAGCTAGAGCAAGAAGTGCAATTCCTTGGCGTTCAAAAGCCAAATAATCGTGCGCCTTTTTCCGAATTCTTTACCTTCCCACAGTACTCAACAAGGTCTACTAGTGATCATGAGTCTACGGTGGCCACCATGGCGGAGCTGCCGCTACTCGAGTGCAGGTCGAGCAATATCGCAGCTGACATAGAAGTGACAATGGTGGAGAGCCATGCAAGCCTCAAAGTAAGATCCAAAAGGCTCCCAAAGCAGCTCTTGAAAATTGTTTCTGGGTTGCATGATATGCACCTCACCGTTCTCCATCTCAATGTTGTCACCGCTGATGATATTGTGCTCTATTCCCTGAGCCTCAAGGTTGAAGATGAGTGCATGCTGACTTCAGTGGATGAAATTGCAACAGCTGTCCATGAGATGCTAGCTAGGATTCAAGAAGAAGCAATGCTGGATTTGAACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HLH

Protein Analysis

321

Amino Acids

36.14

Weight (kDa)

5.11

Isoelectric Point (pI)

61.3

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HLH	PF00010	123 - 174	6.2e-12	Helix-loop-helix DNA-binding domain
bHLH-TF_ACT-like_plant	PF22754	231 - 307	8.2e-06	Plant bHLH transcription factor, ACT-like domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002598)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G22490 AT1G22490 AT1G72210 AT1G72210
fragaria_vesca	FvH4_5g36240 FvH4_5g36240 FvH4_6g05440 FvH4_6g05440
malus_domestica	MD04G1208700.v1.1 MD08G1190500.v1.1 MD12G1223000.v1.1 MD15G1377800.v1.1
prunus_persica	Prupe.1G524500_v2.0.a1 Prupe.1G524500_v2.0.a1 Prupe.6G329600_v2.0.a1 Prupe.6G329600_v2.0.a1
pyrus_communis	pycom04g18480 pycom08g16370 pycom12g20890 pycom15g33850
rosa_chinensis	RchiOBHm_Chr3g0454211 RchiOBHm_Chr7g0238141
rosa_laevigata	RLG00000000939 RLG00000025476
rosa_multiflora	Rmu_sc0007628.1_g000004
rosa_roxburghii	Rroxscaffold_165G00436990 Rroxscaffold_3G00223340 Rroxscaffold_6G00425370
rosa_rugosa	Rorug02G0653500 Rorug07G0310500
rosa_samantha	Rh3AG056600 Rh3BG058100 Rh3CG057300 Rh3DG058600 Rh7AG466000 Rh7BG436700 Rh7CG484000 Rh7DG452400
rosa_wichuraiana	Rw3G004360 Rw7G038590

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	328
Acc36I	ACCTGC	1 cut(s)	660
AccI	GTMKAC	2 cut(s)	611, 629
AciI	CCGC	6 cut(s)	14, 176, 386, 647, 656, 825
AclWI	GGATC	2 cut(s)	26, 732
AcoI	YGGCCR	1 cut(s)	636
AcsI	RAATTY	3 cut(s)	79, 266, 578
AcuI	CTGAAG	2 cut(s)	181, 870
AcyI	GRCGYC	1 cut(s)	325
AfaI	GTAC	3 cut(s)	310, 458, 599
AgsI	TTSAA	7 cut(s)	183, 272, 548, 766, 866, 935, 958
AhlI	ACTAGT	1 cut(s)	614
AleI	CACNNNNGTG	1 cut(s)	198
AluBI	AGCT	7 cut(s)	87, 517, 652, 689, 760, 908, 926
AluI	AGCT	7 cut(s)	87, 517, 652, 689, 760, 908, 926
Alw21I	GWGCWC	1 cut(s)	843
AlwI	GGATC	2 cut(s)	26, 732
Ama87I	CYCGRG	2 cut(s)	449, 662
AoxI	GGCC	1 cut(s)	636
ApeKI	GCWGC	5 cut(s)	103, 234, 652, 686, 757
ApoI	RAATTY	3 cut(s)	79, 266, 578
AspLEI	GCGC	2 cut(s)	396, 568
AsuHPI	GGTGA	5 cut(s)	165, 266, 482, 790, 814
AsuNHI	GCTAGC	1 cut(s)	922
AvaI	CYCGRG	2 cut(s)	449, 662
BalI	TGGCCA	1 cut(s)	638
BauI	CACGAG	1 cut(s)	312
Bbv12I	GWGCWC	1 cut(s)	843
BbvI	GCAGC	5 cut(s)	115, 246, 639, 698, 769
BccI	CCATC	1 cut(s)	816
BclI	TGATCA	4 cut(s)	97, 256, 472, 619
BcuI	ACTAGT	1 cut(s)	614
BfaI	CTAG	5 cut(s)	303, 518, 615, 923, 927
BfuAI	ACCTGC	1 cut(s)	660
BglI	GCCNNNNNGGC	1 cut(s)	644
BisI	GCNGC	6 cut(s)	104, 235, 653, 656, 687, 758
BlsI	GCNGC	6 cut(s)	105, 236, 654, 657, 688, 759
BmcAI	AGTACT	2 cut(s)	310, 599
BmeT110I	CYCGRG	2 cut(s)	449, 662
BmiI	GGNNCC	1 cut(s)	749
BmsI	GCATC	2 cut(s)	488, 909
BmtI	GCTAGC	1 cut(s)	926
BplI	GAGNNNNNCTC	4 cut(s)	361, 393, 410, 442
Bpu10I	CCTNAGC	1 cut(s)	851
BpuEI	CTTGAG	2 cut(s)	12, 842
BsaHI	GRCGYC	1 cut(s)	325
BsaJI	CCNNGG	2 cut(s)	538, 642
Bse1I	ACTGG	1 cut(s)	227
Bse3DI	GCAATG	2 cut(s)	381, 951
BseDI	CCNNGG	2 cut(s)	538, 642
BseGI	GGATG	1 cut(s)	898
BseMI	GCAATG	2 cut(s)	381, 951
BseMII	CTCAG	1 cut(s)	842
BseNI	ACTGG	1 cut(s)	227
BseRI	GAGGAG	2 cut(s)	365, 368
BseXI	GCAGC	5 cut(s)	115, 246, 639, 698, 769
BsgI	GTGCAG	1 cut(s)	688
Bsh1285I	CGRYCG	1 cut(s)	18
BshFI	GGCC	1 cut(s)	638
BsiEI	CGRYCG	1 cut(s)	18
BsiHKAI	GWGCWC	1 cut(s)	843
BsiHKCI	CYCGRG	2 cut(s)	449, 662
BsiWI	CGTACG	1 cut(s)	456
BsnI	GGCC	1 cut(s)	638
BsoBI	CYCGRG	2 cut(s)	449, 662
Bsp1286I	GDGCHC	1 cut(s)	843
Bsp143I	GATC	7 cut(s)	31, 97, 256, 437, 472, 619, 737
Bsp19I	CCATGG	1 cut(s)	642
BspACI	CCGC	6 cut(s)	14, 176, 386, 647, 656, 825
BspANI	GGCC	1 cut(s)	638
BspCNI	CTCAG	1 cut(s)	843
BspHI	TCATGA	1 cut(s)	622
BspLI	GGNNCC	1 cut(s)	749
BspMI	ACCTGC	1 cut(s)	660
BspOI	GCTAGC	1 cut(s)	926
BspPI	GGATC	2 cut(s)	26, 732
BsrDI	GCAATG	2 cut(s)	381, 951
BsrI	ACTGG	1 cut(s)	227
BssECI	CCNNGG	2 cut(s)	538, 642
BssMI	GATC	7 cut(s)	31, 97, 256, 437, 472, 619, 737
BssNI	GRCGYC	1 cut(s)	325
BssSI	CACGAG	1 cut(s)	312
BssT1I	CCWWGG	2 cut(s)	538, 642
Bst2BI	CACGAG	1 cut(s)	312
Bst4CI	ACNGT	3 cut(s)	597, 634, 802
Bst6I	CTCTTC	1 cut(s)	329
BstACI	GRCGYC	1 cut(s)	325
BstAPI	GCANNNNNTGC	2 cut(s)	529, 790
BstC8I	GCNNGC	4 cut(s)	108, 724, 878, 924
BstDEI	CTNAG	1 cut(s)	851
BstDSI	CCRYGG	1 cut(s)	642
BstF5I	GGATG	1 cut(s)	898
BstHHI	GCGC	2 cut(s)	396, 568
BstKTI	GATC	7 cut(s)	34, 100, 259, 440, 475, 622, 740
BstMBI	GATC	7 cut(s)	31, 97, 256, 437, 472, 619, 737
BstMCI	CGRYCG	1 cut(s)	18
BstMWI	GCNNNNNNNGC	7 cut(s)	11, 529, 644, 675, 723, 754, 790
BstNSI	RCATGY	1 cut(s)	880
BstV1I	GCAGC	5 cut(s)	115, 246, 639, 698, 769
BstX2I	RGATCY	2 cut(s)	31, 737
BstYI	RGATCY	2 cut(s)	31, 737
BsuRI	GGCC	1 cut(s)	638
BtgI	CCRYGG	1 cut(s)	642
BtsCI	GGATG	1 cut(s)	898
BtsIMutI	CAGTG	2 cut(s)	205, 894
BveI	ACCTGC	1 cut(s)	660
Cac8I	GCNNGC	4 cut(s)	108, 724, 878, 924
CciI	TCATGA	1 cut(s)	622
CfoI	GCGC	2 cut(s)	396, 568
Csp6I	GTAC	3 cut(s)	309, 457, 598
CviAII	CATG	6 cut(s)	623, 643, 719, 785, 877, 914
CviQI	GTAC	3 cut(s)	309, 457, 598
DdeI	CTNAG	1 cut(s)	851
DpnI	GATC	7 cut(s)	33, 99, 258, 439, 474, 621, 739
DpnII	GATC	7 cut(s)	31, 97, 256, 437, 472, 619, 737
EaeI	YGGCCR	1 cut(s)	636
Eam1104I	CTCTTC	1 cut(s)	329
EarI	CTCTTC	1 cut(s)	329
EciI	GGCGGA	1 cut(s)	662
Eco130I	CCWWGG	2 cut(s)	538, 642
Eco57I	CTGAAG	2 cut(s)	181, 870
Eco88I	CYCGRG	2 cut(s)	449, 662
EcoRI	GAATTC	1 cut(s)	578
EcoT14I	CCWWGG	2 cut(s)	538, 642
ErhI	CCWWGG	2 cut(s)	538, 642
FaeI	CATG	6 cut(s)	626, 646, 722, 788, 880, 917
FalI	AAGNNNNNCTT	4 cut(s)	99, 131, 746, 778
FatI	CATG	6 cut(s)	622, 642, 718, 784, 876, 913
FbaI	TGATCA	4 cut(s)	97, 256, 472, 619
FblI	GTMKAC	2 cut(s)	611, 629
Fnu4HI	GCNGC	6 cut(s)	104, 235, 653, 656, 687, 758
FokI	GGATG	1 cut(s)	905
Fsp4HI	GCNGC	6 cut(s)	104, 235, 653, 656, 687, 758
FspBI	CTAG	5 cut(s)	303, 518, 615, 923, 927
GlaI	GCGC	2 cut(s)	395, 567
GluI	GCNGC	6 cut(s)	104, 235, 653, 656, 687, 758
HaeIII	GGCC	1 cut(s)	638
HhaI	GCGC	2 cut(s)	396, 568
Hin1I	GRCGYC	1 cut(s)	325
Hin1II	CATG	6 cut(s)	626, 646, 722, 788, 880, 917
Hin6I	GCGC	2 cut(s)	394, 566
HinP1I	GCGC	2 cut(s)	394, 566
HinfI	GANTC	4 cut(s)	376, 452, 626, 931
HphI	GGTGA	5 cut(s)	165, 266, 482, 790, 814
Hpy166II	GTNNAC	2 cut(s)	612, 630
Hpy188I	TCNGA	1 cut(s)	577
Hpy188III	TCNNGA	6 cut(s)	8, 29, 116, 623, 763, 935
Hpy8I	GTNNAC	2 cut(s)	612, 630
Hpy99I	CGWCG	2 cut(s)	327, 330
HpyAV	CCTTC	3 cut(s)	189, 505, 598
HpyCH4III	ACNGT	3 cut(s)	597, 634, 802
HpyCH4IV	ACGT	3 cut(s)	297, 325, 459
HpyCH4V	TGCA	9 cut(s)	45, 208, 532, 669, 722, 784, 793, 876, 902
HpyF10VI	GCNNNNNNNGC	7 cut(s)	11, 529, 644, 675, 723, 754, 790
HpyF3I	CTNAG	1 cut(s)	851
HpySE526I	ACGT	3 cut(s)	297, 325, 459
Hsp92I	GRCGYC	1 cut(s)	325
Hsp92II	CATG	6 cut(s)	626, 646, 722, 788, 880, 917
HspAI	GCGC	2 cut(s)	394, 566
Ksp22I	TGATCA	4 cut(s)	97, 256, 472, 619
Kzo9I	GATC	7 cut(s)	31, 97, 256, 437, 472, 619, 737
LmnI	GCTCC	3 cut(s)	514, 649, 753
LpnPI	CCDG	9 cut(s)	155, 237, 240, 261, 380, 655, 762, 863, 935
Lsp1109I	GCAGC	5 cut(s)	115, 246, 639, 698, 769
LweI	GCATC	2 cut(s)	488, 909
MaeI	CTAG	5 cut(s)	303, 518, 615, 923, 927
MaeII	ACGT	3 cut(s)	297, 325, 459
MaeIII	GTNAC	2 cut(s)	700, 820
MalI	GATC	7 cut(s)	33, 99, 258, 439, 474, 621, 739
MboI	GATC	7 cut(s)	31, 97, 256, 437, 472, 619, 737
MboII	GAAGA	5 cut(s)	346, 414, 425, 878, 950
MflI	RGATCY	2 cut(s)	31, 737
MhlI	GDGCHC	1 cut(s)	843
MlsI	TGGCCA	1 cut(s)	638
MluCI	AATT	9 cut(s)	79, 145, 203, 266, 483, 533, 578, 768, 897
MluNI	TGGCCA	1 cut(s)	638
MlyI	GAGTC	3 cut(s)	370, 461, 635
Mox20I	TGGCCA	1 cut(s)	638
MscI	TGGCCA	1 cut(s)	638
MseI	TTAA	1 cut(s)	501
MslI	CAYNNNNRTG	3 cut(s)	198, 698, 813
Msp20I	TGGCCA	1 cut(s)	638
MspA1I	CMGCKG	3 cut(s)	689, 827, 908
MwoI	GCNNNNNNNGC	7 cut(s)	11, 529, 644, 675, 723, 754, 790
NcoI	CCATGG	1 cut(s)	642
NdeII	GATC	7 cut(s)	31, 97, 256, 437, 472, 619, 737
NheI	GCTAGC	1 cut(s)	922
NlaIII	CATG	6 cut(s)	626, 646, 722, 788, 880, 917
NlaIV	GGNNCC	1 cut(s)	749
NmeAIII	GCCGAG	1 cut(s)	105
NmuCI	GTSAC	2 cut(s)	700, 820
NspI	RCATGY	1 cut(s)	880
OliI	CACNNNNGTG	1 cut(s)	198
PaeI	GCATGC	1 cut(s)	880
PaeR7I	CTCGAG	1 cut(s)	662
PagI	TCATGA	1 cut(s)	622
PcsI	WCGNNNNNNNCGW	1 cut(s)	319
PfeI	GAWTC	1 cut(s)	931
Pfl23II	CGTACG	1 cut(s)	456
PkrI	GCNGC	6 cut(s)	105, 236, 654, 657, 688, 759
PleI	GAGTC	3 cut(s)	370, 460, 634
PpsI	GAGTC	3 cut(s)	370, 460, 634
PspLI	CGTACG	1 cut(s)	456
PspN4I	GGNNCC	1 cut(s)	749
PspXI	VCTCGAGB	1 cut(s)	662
PsuI	RGATCY	2 cut(s)	31, 737
PvuII	CAGCTG	2 cut(s)	689, 908
RsaI	GTAC	3 cut(s)	310, 458, 599
RsaNI	GTAC	3 cut(s)	309, 457, 598
RseI	CAYNNNNRTG	3 cut(s)	198, 698, 813
SaqAI	TTAA	1 cut(s)	501
SatI	GCNGC	6 cut(s)	104, 235, 653, 656, 687, 758
Sau3AI	GATC	7 cut(s)	31, 97, 256, 437, 472, 619, 737
ScaI	AGTACT	2 cut(s)	310, 599
SchI	GAGTC	3 cut(s)	370, 461, 635
SduI	GDGCHC	1 cut(s)	843
SfaNI	GCATC	2 cut(s)	488, 909
Sfr274I	CTCGAG	1 cut(s)	662
SlaI	CTCGAG	1 cut(s)	662
SmiMI	CAYNNNNRTG	3 cut(s)	198, 698, 813
SmlI	CTYRAG	3 cut(s)	27, 662, 857
SmoI	CTYRAG	3 cut(s)	27, 662, 857
SpeI	ACTAGT	1 cut(s)	614
SphI	GCATGC	1 cut(s)	880
Sse9I	AATT	9 cut(s)	79, 145, 203, 266, 483, 533, 578, 768, 897
SsiI	CCGC	6 cut(s)	14, 176, 386, 647, 656, 825
SspMI	CTAG	5 cut(s)	303, 518, 615, 923, 927
StyI	CCWWGG	2 cut(s)	538, 642
TaaI	ACNGT	3 cut(s)	597, 634, 802
TaiI	ACGT	3 cut(s)	300, 328, 462
TaqI	TCGA	4 cut(s)	93, 436, 663, 674
TasI	AATT	9 cut(s)	79, 145, 203, 266, 483, 533, 578, 768, 897
TatI	WGTACW	2 cut(s)	308, 597
TauI	GCSGC	1 cut(s)	658
TfiI	GAWTC	1 cut(s)	931
Tru1I	TTAA	1 cut(s)	501
Tru9I	TTAA	1 cut(s)	501
TscAI	CASTG	2 cut(s)	205, 894
TseFI	GTSAC	2 cut(s)	700, 820
TseI	GCWGC	5 cut(s)	103, 234, 652, 686, 757
Tsp45I	GTSAC	2 cut(s)	700, 820
TspDTI	ATGAA	2 cut(s)	428, 909
TspGWI	ACGGA	1 cut(s)	418
TspRI	CASTG	2 cut(s)	205, 894
XapI	RAATTY	3 cut(s)	79, 266, 578
XceI	RCATGY	1 cut(s)	880
XhoI	CTCGAG	1 cut(s)	662
XmiI	GTMKAC	2 cut(s)	611, 629
XspI	CTAG	5 cut(s)	303, 518, 615, 923, 927
ZraI	GACGTC	1 cut(s)	326
ZrmI	AGTACT	2 cut(s)	310, 599

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.