Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr8

Orthogroup ID

OG0002598

Physical Location & Seq

Genomic Coordinates Reverse (-)

16277529 .. 16279724

Gene Structure 2196 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom08g16370.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 948 bp

ATGGCATTAGAAGCTGTGATTTCCCCACAAGAGTACCTATTTGGCTTTGGTTGCAAAGACTACTACTCTTTTAATGGAGGTGGTTCTTGGGGCAGTGACTTCAGCTTACAAGACCGACAAGGCATCATTGAAAATTGGGACTACTGCTCATCATTTCCTTCACTTTTGCAAAATGTGAAAGATTGGGATCCTAACTCCTCACCTGAGGCTTGCACAGTTGATCAATCTTGCCCACCAGGACACCTCTCTGCCATGGAAACACCACCGCCCCCGCCACCACCTGCAACAACGAATCGCCGCAAACGGCATCGCACCAAGAGCAGCAAGAACAAGGAGGAAATTGAGAACCAGAGGATGACGCACATTGTTGTGGAGCGCAACAGGCGCAAGCAAATGAATGAGTACCTTGCTGTCCTCAGATCATTGATGCCACAATCTTATGCTCAAAGGGGTGACCAAGCATCAATTATTGGGGGTGCCATAAACTTTGTGAAGGAGCTAGAGCAGCTTTTGCAGTCGATGGACAGCAACAAGAGGAGTAAGCAACAACCTTTGGCTGAGTTCTTCACCTTCCCACAATTCTCAACTCGAGCAACACAGTGTAACCAATCAGCTGGTCTCCAAGCGAACGAGTTGAATACGACTCAGTATAACAACAACCAGTGGGCAGAAGCAGCAGCAGACATAGAAGTGACCATGGTGGACAGCCATGCCAACCTGAAGATACTTTCCAAGAAAAGGCCTAGACAGCTGTTGAACATGGTGGCTGGGTTTCAAAGCCTTAGGCTCAGTGTTCTTCACCTTAATGTCACCACAGCTGATGAAATGGTCCTCTACTCAGTTAGCGTTAAGATTGAAGAAGGGTGCCTCCTCAATACAGTGGATGAAATAGCAGCAGCTGTTAATCAAATGCTGCGCAGCATTAATCAAGAAGTCGACTTTAATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HLH

Protein Analysis

316

Amino Acids

35.47

Weight (kDa)

5.82

Isoelectric Point (pI)

66.68

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002598)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G22490 AT1G22490 AT1G72210 AT1G72210
fragaria_vesca	FvH4_5g36240 FvH4_5g36240 FvH4_6g05440 FvH4_6g05440
malus_domestica	MD04G1208700.v1.1 MD08G1190500.v1.1 MD12G1223000.v1.1 MD15G1377800.v1.1
prunus_persica	Prupe.1G524500_v2.0.a1 Prupe.1G524500_v2.0.a1 Prupe.6G329600_v2.0.a1 Prupe.6G329600_v2.0.a1
pyrus_communis	pycom04g18480 pycom08g16370 pycom12g20890 pycom15g33850
rosa_chinensis	RchiOBHm_Chr3g0454211 RchiOBHm_Chr7g0238141
rosa_laevigata	RLG00000000939 RLG00000025476
rosa_multiflora	Rmu_sc0007628.1_g000004
rosa_roxburghii	Rroxscaffold_165G00436990 Rroxscaffold_3G00223340 Rroxscaffold_6G00425370
rosa_rugosa	Rorug02G0653500 Rorug07G0310500
rosa_samantha	Rh3AG056600 Rh3BG058100 Rh3CG057300 Rh3DG058600 Rh7AG466000 Rh7BG436700 Rh7CG484000 Rh7DG452400
rosa_wichuraiana	Rw3G004360 Rw7G038590

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	289
Acc16I	TGCGCA	1 cut(s)	917
Acc36I	ACCTGC	1 cut(s)	289
AccB1I	GGYRCC	2 cut(s)	476, 864
AccI	GTMKAC	1 cut(s)	936
AciI	CCGC	3 cut(s)	266, 272, 298
AclWI	GGATC	2 cut(s)	182, 195
AcuI	CTGAAG	2 cut(s)	85, 740
AfaI	GTAC	2 cut(s)	35, 404
AfiI	CCNNNNNNNGG	1 cut(s)	738
AgsI	TTSAA	5 cut(s)	131, 637, 757, 776, 857
AjnI	CCWGG	1 cut(s)	235
AluBI	AGCT	8 cut(s)	14, 105, 499, 508, 614, 751, 818, 899
AluI	AGCT	8 cut(s)	14, 105, 499, 508, 614, 751, 818, 899
Alw26I	GTCTC	1 cut(s)	623
AlwI	GGATC	2 cut(s)	182, 195
AlwNI	CAGNNNCTG	1 cut(s)	899
Ama87I	CYCGRG	1 cut(s)	588
AoxI	GGCC	1 cut(s)	740
ApeKI	GCWGC	8 cut(s)	321, 505, 674, 677, 893, 896, 913, 918
AseI	ATTAAT	1 cut(s)	924
AspLEI	GCGC	3 cut(s)	378, 387, 918
AspS9I	GGNCC	1 cut(s)	829
AsuHPI	GGTGA	5 cut(s)	192, 464, 559, 791, 802
AvaI	CYCGRG	1 cut(s)	588
AvaII	GGWCC	1 cut(s)	829
AxyI	CCTNAGG	2 cut(s)	204, 782
BaeI	ACNNNNGTAYC	2 cut(s)	17, 50
BamHI	GGATCC	1 cut(s)	187
BanI	GGYRCC	2 cut(s)	476, 864
BbvI	GCAGC	8 cut(s)	333, 517, 686, 689, 900, 905, 908, 930
BccI	CCATC	1 cut(s)	514
BceAI	ACGGC	1 cut(s)	320
BciT130I	CCWGG	1 cut(s)	237
BclI	TGATCA	1 cut(s)	220
BcoDI	GTCTC	1 cut(s)	623
BfaI	CTAG	2 cut(s)	500, 744
BfuAI	ACCTGC	1 cut(s)	289
BisI	GCNGC	9 cut(s)	298, 322, 506, 675, 678, 894, 897, 914, 919
BlsI	GCNGC	9 cut(s)	299, 323, 507, 676, 679, 895, 898, 915, 920
Bme1390I	CCNGG	1 cut(s)	237
Bme18I	GGWCC	1 cut(s)	829
BmeT110I	CYCGRG	1 cut(s)	588
BmgT120I	GGNCC	1 cut(s)	829
BmiI	GGNNCC	3 cut(s)	189, 478, 866
BmrFI	CCNGG	1 cut(s)	237
BmsI	GCATC	4 cut(s)	132, 316, 417, 470
BsaBI	GATNNNNATC	1 cut(s)	186
BsaI	GGTCTC	1 cut(s)	623
BsaJI	CCNNGG	2 cut(s)	252, 696
Bsc4I	CCNNNNNNNGG	1 cut(s)	738
Bse1I	ACTGG	1 cut(s)	661
Bse21I	CCTNAGG	2 cut(s)	204, 782
Bse8I	GATNNNNATC	1 cut(s)	186
BseBI	CCWGG	1 cut(s)	237
BseDI	CCNNGG	2 cut(s)	252, 696
BseGI	GGATG	2 cut(s)	360, 889
BseJI	GATNNNNATC	1 cut(s)	186
BseLI	CCNNNNNNNGG	1 cut(s)	738
BseMII	CTCAG	6 cut(s)	195, 430, 549, 659, 802, 852
BseNI	ACTGG	1 cut(s)	661
BseRI	GAGGAG	3 cut(s)	187, 550, 860
BseXI	GCAGC	8 cut(s)	333, 517, 686, 689, 900, 905, 908, 930
BseYI	CCCAGC	1 cut(s)	767
BshFI	GGCC	1 cut(s)	742
BshNI	GGYRCC	2 cut(s)	476, 864
BsiHKCI	CYCGRG	1 cut(s)	588
BslFI	GGGAC	1 cut(s)	152
BslI	CCNNNNNNNGG	1 cut(s)	738
BsmAI	GTCTC	1 cut(s)	623
BsmFI	GGGAC	1 cut(s)	152
BsnI	GGCC	1 cut(s)	742
Bso31I	GGTCTC	1 cut(s)	623
BsoBI	CYCGRG	1 cut(s)	588
Bsp143I	GATC	3 cut(s)	187, 220, 419
Bsp19I	CCATGG	2 cut(s)	252, 696
BspACI	CCGC	3 cut(s)	266, 272, 298
BspANI	GGCC	1 cut(s)	742
BspCNI	CTCAG	6 cut(s)	196, 429, 550, 658, 801, 851
BspLI	GGNNCC	3 cut(s)	189, 478, 866
BspMI	ACCTGC	1 cut(s)	289
BspPI	GGATC	2 cut(s)	182, 195
BspT107I	GGYRCC	2 cut(s)	476, 864
BspTNI	GGTCTC	1 cut(s)	623
BsrI	ACTGG	1 cut(s)	661
BssECI	CCNNGG	2 cut(s)	252, 696
BssMI	GATC	3 cut(s)	187, 220, 419
BssT1I	CCWWGG	2 cut(s)	252, 696
Bst2UI	CCWGG	1 cut(s)	237
Bst4CI	ACNGT	3 cut(s)	217, 600, 880
BstAPI	GCANNNNNTGC	1 cut(s)	511
BstC8I	GCNNGC	2 cut(s)	211, 389
BstDEI	CTNAG	7 cut(s)	204, 416, 558, 645, 782, 788, 838
BstDSI	CCRYGG	2 cut(s)	252, 696
BstEII	GGTNACC	1 cut(s)	452
BstF5I	GGATG	2 cut(s)	360, 889
BstHHI	GCGC	3 cut(s)	378, 387, 918
BstKTI	GATC	3 cut(s)	190, 223, 422
BstMAI	GTCTC	1 cut(s)	623
BstMBI	GATC	3 cut(s)	187, 220, 419
BstMWI	GCNNNNNNNGC	9 cut(s)	11, 51, 318, 382, 384, 505, 511, 674, 748
BstNI	CCWGG	1 cut(s)	237
BstPI	GGTNACC	1 cut(s)	452
BstSCI	CCNGG	1 cut(s)	235
BstV1I	GCAGC	8 cut(s)	333, 517, 686, 689, 900, 905, 908, 930
BstX2I	RGATCY	1 cut(s)	187
BstXI	CCANNNNNNTGG	1 cut(s)	614
BstYI	RGATCY	1 cut(s)	187
Bsu36I	CCTNAGG	2 cut(s)	204, 782
BsuRI	GGCC	1 cut(s)	742
BtgI	CCRYGG	2 cut(s)	252, 696
BtgZI	GCGATG	1 cut(s)	293
BtsCI	GGATG	2 cut(s)	360, 889
BtsI	GCAGTG	1 cut(s)	100
BtsIMutI	CAGTG	5 cut(s)	100, 605, 668, 796, 885
BveI	ACCTGC	1 cut(s)	289
Cac8I	GCNNGC	2 cut(s)	211, 389
CaiI	CAGNNNCTG	1 cut(s)	899
CfoI	GCGC	3 cut(s)	378, 387, 918
Cfr13I	GGNCC	1 cut(s)	829
CseI	GACGC	1 cut(s)	367
Csp6I	GTAC	2 cut(s)	34, 403
CviAII	CATG	4 cut(s)	253, 697, 710, 760
CviQI	GTAC	2 cut(s)	34, 403
DdeI	CTNAG	7 cut(s)	204, 416, 558, 645, 782, 788, 838
DpnI	GATC	3 cut(s)	189, 222, 421
DpnII	GATC	3 cut(s)	187, 220, 419
Eco130I	CCWWGG	2 cut(s)	252, 696
Eco147I	AGGCCT	1 cut(s)	742
Eco31I	GGTCTC	1 cut(s)	623
Eco47I	GGWCC	1 cut(s)	829
Eco57I	CTGAAG	2 cut(s)	85, 740
Eco81I	CCTNAGG	2 cut(s)	204, 782
Eco88I	CYCGRG	1 cut(s)	588
Eco91I	GGTNACC	1 cut(s)	452
EcoO65I	GGTNACC	1 cut(s)	452
EcoRII	CCWGG	1 cut(s)	235
EcoT14I	CCWWGG	2 cut(s)	252, 696
ErhI	CCWWGG	2 cut(s)	252, 696
FaeI	CATG	4 cut(s)	256, 700, 713, 763
FaiI	YATR	8 cut(s)	254, 441, 482, 651, 686, 698, 711, 761
FaqI	GGGAC	1 cut(s)	152
FatI	CATG	4 cut(s)	252, 696, 709, 759
FauI	CCCGC	1 cut(s)	279
FbaI	TGATCA	1 cut(s)	220
FblI	GTMKAC	1 cut(s)	936
Fnu4HI	GCNGC	9 cut(s)	298, 322, 506, 675, 678, 894, 897, 914, 919
FokI	GGATG	2 cut(s)	367, 896
Fsp4HI	GCNGC	9 cut(s)	298, 322, 506, 675, 678, 894, 897, 914, 919
FspBI	CTAG	2 cut(s)	500, 744
FspI	TGCGCA	1 cut(s)	917
GlaI	GCGC	3 cut(s)	377, 386, 917
GluI	GCNGC	9 cut(s)	298, 322, 506, 675, 678, 894, 897, 914, 919
GsaI	CCCAGC	1 cut(s)	771
HaeIII	GGCC	1 cut(s)	742
HgaI	GACGC	1 cut(s)	367
HhaI	GCGC	3 cut(s)	378, 387, 918
Hin1II	CATG	4 cut(s)	256, 700, 713, 763
Hin6I	GCGC	3 cut(s)	376, 385, 916
HinP1I	GCGC	3 cut(s)	376, 385, 916
HincII	GTYRAC	1 cut(s)	937
HindII	GTYRAC	1 cut(s)	937
HinfI	GANTC	2 cut(s)	292, 643
HphI	GGTGA	5 cut(s)	192, 464, 559, 791, 802
Hpy166II	GTNNAC	2 cut(s)	703, 937
Hpy188I	TCNGA	1 cut(s)	419
Hpy188III	TCNNGA	1 cut(s)	929
Hpy8I	GTNNAC	2 cut(s)	703, 937
HpyAV	CCTTC	4 cut(s)	168, 487, 580, 854
HpyCH4III	ACNGT	3 cut(s)	217, 600, 880
HpyCH4V	TGCA	5 cut(s)	54, 169, 213, 284, 514
HpyF10VI	GCNNNNNNNGC	9 cut(s)	11, 51, 318, 382, 384, 505, 511, 674, 748
HpyF3I	CTNAG	7 cut(s)	204, 416, 558, 645, 782, 788, 838
Hsp92II	CATG	4 cut(s)	256, 700, 713, 763
HspAI	GCGC	3 cut(s)	376, 385, 916
Ksp22I	TGATCA	1 cut(s)	220
Kzo9I	GATC	3 cut(s)	187, 220, 419
LmnI	GCTCC	2 cut(s)	373, 496
Lsp1109I	GCAGC	8 cut(s)	333, 517, 686, 689, 900, 905, 908, 930
LweI	GCATC	4 cut(s)	132, 316, 417, 470
MaeI	CTAG	2 cut(s)	500, 744
MaeIII	GTNAC	5 cut(s)	95, 452, 602, 691, 808
MalI	GATC	3 cut(s)	189, 222, 421
MboI	GATC	3 cut(s)	187, 220, 419
MboII	GAAGA	4 cut(s)	556, 733, 788, 869
MflI	RGATCY	1 cut(s)	187
MluCI	AATT	5 cut(s)	133, 339, 465, 578, 943
MlyI	GAGTC	1 cut(s)	637
MseI	TTAA	6 cut(s)	72, 804, 849, 903, 924, 942
MslI	CAYNNNNRTG	3 cut(s)	368, 689, 804
MspA1I	CMGCKG	4 cut(s)	614, 751, 818, 899
MspR9I	CCNGG	1 cut(s)	237
MvaI	CCWGG	1 cut(s)	237
MwoI	GCNNNNNNNGC	9 cut(s)	11, 51, 318, 382, 384, 505, 511, 674, 748
NcoI	CCATGG	2 cut(s)	252, 696
NdeII	GATC	3 cut(s)	187, 220, 419
NlaIII	CATG	4 cut(s)	256, 700, 713, 763
NlaIV	GGNNCC	3 cut(s)	189, 478, 866
NmuCI	GTSAC	4 cut(s)	95, 452, 691, 808
NsbI	TGCGCA	1 cut(s)	917
PaeR7I	CTCGAG	1 cut(s)	588
PaqCI	CACCTGC	1 cut(s)	289
PceI	AGGCCT	1 cut(s)	742
PfeI	GAWTC	1 cut(s)	292
PkrI	GCNGC	9 cut(s)	299, 323, 507, 676, 679, 895, 898, 915, 920
PleI	GAGTC	1 cut(s)	637
PpsI	GAGTC	1 cut(s)	637
PshBI	ATTAAT	1 cut(s)	924
Psp6I	CCWGG	1 cut(s)	235
PspEI	GGTNACC	1 cut(s)	452
PspFI	CCCAGC	1 cut(s)	767
PspGI	CCWGG	1 cut(s)	235
PspN4I	GGNNCC	3 cut(s)	189, 478, 866
PspPI	GGNCC	1 cut(s)	829
PspXI	VCTCGAGB	1 cut(s)	588
PstNI	CAGNNNCTG	1 cut(s)	899
PsuI	RGATCY	1 cut(s)	187
PvuII	CAGCTG	4 cut(s)	614, 751, 818, 899
RsaI	GTAC	2 cut(s)	35, 404
RsaNI	GTAC	2 cut(s)	34, 403
RseI	CAYNNNNRTG	3 cut(s)	368, 689, 804
SalI	GTCGAC	1 cut(s)	935
SaqAI	TTAA	6 cut(s)	72, 804, 849, 903, 924, 942
SatI	GCNGC	9 cut(s)	298, 322, 506, 675, 678, 894, 897, 914, 919
Sau3AI	GATC	3 cut(s)	187, 220, 419
Sau96I	GGNCC	1 cut(s)	829
SchI	GAGTC	1 cut(s)	637
ScrFI	CCNGG	1 cut(s)	237
SfaNI	GCATC	4 cut(s)	132, 316, 417, 470
Sfr274I	CTCGAG	1 cut(s)	588
SinI	GGWCC	1 cut(s)	829
SlaI	CTCGAG	1 cut(s)	588
SmiMI	CAYNNNNRTG	3 cut(s)	368, 689, 804
SmlI	CTYRAG	1 cut(s)	588
SmoI	CTYRAG	1 cut(s)	588
Sse9I	AATT	5 cut(s)	133, 339, 465, 578, 943
SseBI	AGGCCT	1 cut(s)	742
SsiI	CCGC	3 cut(s)	266, 272, 298
SspMI	CTAG	2 cut(s)	500, 744
StuI	AGGCCT	1 cut(s)	742
StyD4I	CCNGG	1 cut(s)	235
StyI	CCWWGG	2 cut(s)	252, 696
TaaI	ACNGT	3 cut(s)	217, 600, 880
TaqI	TCGA	3 cut(s)	518, 589, 936
TaqII	GACCGA	1 cut(s)	129
TasI	AATT	5 cut(s)	133, 339, 465, 578, 943
TauI	GCSGC	1 cut(s)	300
TfiI	GAWTC	1 cut(s)	292
Tru1I	TTAA	6 cut(s)	72, 804, 849, 903, 924, 942
Tru9I	TTAA	6 cut(s)	72, 804, 849, 903, 924, 942
TscAI	CASTG	5 cut(s)	100, 605, 668, 796, 885
TseFI	GTSAC	4 cut(s)	95, 452, 691, 808
TseI	GCWGC	8 cut(s)	321, 505, 674, 677, 893, 896, 913, 918
Tsp45I	GTSAC	4 cut(s)	95, 452, 691, 808
TspDTI	ATGAA	3 cut(s)	410, 837, 900
TspRI	CASTG	5 cut(s)	100, 605, 668, 796, 885
VpaK11BI	GGWCC	1 cut(s)	829
VspI	ATTAAT	1 cut(s)	924
XhoI	CTCGAG	1 cut(s)	588
XmiI	GTMKAC	1 cut(s)	936
XspI	CTAG	2 cut(s)	500, 744

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.