Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7B

Orthogroup ID

OG0002598

Physical Location & Seq

Genomic Coordinates Forward (+)

50207073 .. 50208835

Gene Structure 1763 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7BG436700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1014 bp

ATGGCATTAGAAGCCGTGGTTTACCCAAAAGACTACAACCCATTTAGCTATGTGTGCAAAGATTTCTACTCCCTTGCACCTTCTAACTGGGGCTATGATTTTAGCTTACAAGAGAATATTCAAGACAAAGCCCTTGTTGGACTTCTTGATCATCAGTATAACAACATACACCATCACCAAGGCAGTCTCAATGAAAATTGGGAGTATAACTGCTCATCATCTCCTCCTTCACTTCTGCAAAATGTGAAGGATTGGGATCCTCATTCCTCACCTGAGGCCTTGGAAACCCCGCCACCGCCACCGGCAACAACAGGTAGACGCAAACGCCGTCGTACCAGAAGCAGCAAGAACAAAGAAGAAATGGAGAACCAACGCATGACCCACATTGTAGTGGAGCGCAACCGCCGCAAGCAAATGAACGAGTACCTCGCCGTCCTCCGCTCTTTGATGCCAACGTCTTATGTTCAAAGGGGGGATCAAGCATCAATTATTGGGGGAGCAATTAACTTTGTGAAGGAGCTAGAGCAACTGTTGCAGTCCATGGACGGCAGCCATAAGAGGGCTACCAAGCCAGAACAAGTACCTTTGGCAGAGTTCTTTACCTTTCCACAGTTCTCCACACCTGCGACGACACAGTGTAACAGCAACACTTCATCATCGTCTTCGTCATCATCTGAGGGTATCCAAATAAACGACGAGCCGTCCTTGGCTCCTCGGAGCAACAATAACAACAACCAGTGGGCAGCTGCAGACATAGAAGTGACCATGGTGGACAGCCATGCCAATCTTAAGATATTGTCCAAGAAGAGGCCTAGGCAGTTGTTGAAGATGGTGGCCGGGTTTCAAAGTCTTGGGCTCAGTGTCCTTCACCTCAATGTCACCACTGTTGATGAAATGGTCCTCTACTCTGTTAGTGTTAAGATTGAAGAAGGGTGCCTGCTAAACACTGTGGATGAAATTGCAGCTGCTGTTAATGAAATGCTGCGCAGAATTCAAGAAGCTGGTTTTAGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HLH

Protein Analysis

337

Amino Acids

37.93

Weight (kDa)

6.16

Isoelectric Point (pI)

64.28

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HLH	PF00010	124 - 175	7e-12	Helix-loop-helix DNA-binding domain
bHLH-TF_ACT-like_plant	PF22754	251 - 326	1.7e-06	Plant bHLH transcription factor, ACT-like domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002598)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G22490 AT1G22490 AT1G72210 AT1G72210
fragaria_vesca	FvH4_5g36240 FvH4_5g36240 FvH4_6g05440 FvH4_6g05440
malus_domestica	MD04G1208700.v1.1 MD08G1190500.v1.1 MD12G1223000.v1.1 MD15G1377800.v1.1
prunus_persica	Prupe.1G524500_v2.0.a1 Prupe.1G524500_v2.0.a1 Prupe.6G329600_v2.0.a1 Prupe.6G329600_v2.0.a1
pyrus_communis	pycom04g18480 pycom08g16370 pycom12g20890 pycom15g33850
rosa_chinensis	RchiOBHm_Chr3g0454211 RchiOBHm_Chr7g0238141
rosa_laevigata	RLG00000000939 RLG00000025476
rosa_multiflora	Rmu_sc0007628.1_g000004
rosa_roxburghii	Rroxscaffold_165G00436990 Rroxscaffold_3G00223340 Rroxscaffold_6G00425370
rosa_rugosa	Rorug02G0653500 Rorug07G0310500
rosa_samantha	Rh3AG056600 Rh3BG058100 Rh3CG057300 Rh3DG058600 Rh7AG466000 Rh7BG436700 Rh7CG484000 Rh7DG452400
rosa_wichuraiana	Rw3G004360 Rw7G038590

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	631
Acc16I	TGCGCA	1 cut(s)	986
Acc36I	ACCTGC	1 cut(s)	631
AccB1I	GGYRCC	1 cut(s)	933
AccBSI	CCGCTC	1 cut(s)	441
AccI	GTMKAC	1 cut(s)	316
AciI	CCGC	5 cut(s)	290, 296, 403, 406, 439
AclWI	GGATC	3 cut(s)	251, 264, 483
AcoI	YGGCCR	1 cut(s)	834
AcsI	RAATTY	1 cut(s)	990
AfaI	GTAC	3 cut(s)	334, 425, 582
AfiI	CCNNNNNNNGG	2 cut(s)	559, 807
AflII	CTTAAG	1 cut(s)	788
AgsI	TTSAA	6 cut(s)	122, 467, 826, 845, 926, 995
AhdI	GACNNNNNGTC	1 cut(s)	700
AluBI	AGCT	7 cut(s)	48, 105, 520, 746, 965, 1001, 1011
AluI	AGCT	7 cut(s)	48, 105, 520, 746, 965, 1001, 1011
Alw26I	GTCTC	1 cut(s)	191
AlwI	GGATC	3 cut(s)	251, 264, 483
AlwNI	CAGNNNCTG	1 cut(s)	968
AoxI	GGCC	3 cut(s)	276, 809, 834
ApeKI	GCWGC	7 cut(s)	342, 549, 743, 746, 962, 965, 982
ApoI	RAATTY	1 cut(s)	990
AspA2I	CCTAGG	1 cut(s)	812
AspLEI	GCGC	2 cut(s)	399, 987
AspS9I	GGNCC	1 cut(s)	898
AsuC2I	CCSGG	1 cut(s)	838
AsuHPI	GGTGA	4 cut(s)	167, 261, 860, 871
AvaII	GGWCC	1 cut(s)	898
AvrII	CCTAGG	1 cut(s)	812
AxyI	CCTNAGG	1 cut(s)	273
BamHI	GGATCC	1 cut(s)	256
BanI	GGYRCC	1 cut(s)	933
BanII	GRGCYC	1 cut(s)	858
BbsI	GAAGAC	1 cut(s)	654
BbvI	GCAGC	7 cut(s)	354, 561, 733, 755, 952, 969, 974
BccI	CCATC	2 cut(s)	180, 823
BceAI	ACGGC	4 cut(s)	312, 416, 562, 685
BciVI	GTATCC	1 cut(s)	692
BclI	TGATCA	1 cut(s)	148
BcnI	CCSGG	1 cut(s)	838
BcoDI	GTCTC	1 cut(s)	191
BfaI	CTAG	2 cut(s)	521, 813
BfmI	CTRYAG	1 cut(s)	747
BfrI	CTTAAG	1 cut(s)	788
BfuAI	ACCTGC	1 cut(s)	631
BfuI	GTATCC	1 cut(s)	692
BisI	GCNGC	8 cut(s)	343, 406, 550, 744, 747, 963, 966, 983
BlnI	CCTAGG	1 cut(s)	812
BlsI	GCNGC	8 cut(s)	344, 407, 551, 745, 748, 964, 967, 984
Bme1390I	CCNGG	1 cut(s)	838
Bme18I	GGWCC	1 cut(s)	898
BmeRI	GACNNNNNGTC	1 cut(s)	700
BmgT120I	GGNCC	1 cut(s)	898
BmiI	GGNNCC	3 cut(s)	258, 711, 935
BmrFI	CCNGG	1 cut(s)	838
BmrI	ACTGGG	1 cut(s)	97
BmsI	GCATC	2 cut(s)	438, 491
BmuI	ACTGGG	1 cut(s)	97
BpiI	GAAGAC	1 cut(s)	654
BpuMI	CCSGG	1 cut(s)	838
BsaBI	GATNNNNATC	1 cut(s)	255
BsaJI	CCNNGG	8 cut(s)	15, 178, 279, 540, 705, 713, 765, 812
Bsc4I	CCNNNNNNNGG	2 cut(s)	559, 807
Bse118I	RCCGGY	1 cut(s)	301
Bse1I	ACTGG	2 cut(s)	92, 736
Bse21I	CCTNAGG	1 cut(s)	273
Bse8I	GATNNNNATC	1 cut(s)	255
BseDI	CCNNGG	8 cut(s)	15, 178, 279, 540, 705, 713, 765, 812
BseGI	GGATG	1 cut(s)	958
BseJI	GATNNNNATC	1 cut(s)	255
BseLI	CCNNNNNNNGG	2 cut(s)	559, 807
BseMII	CTCAG	3 cut(s)	264, 666, 871
BseNI	ACTGG	2 cut(s)	92, 736
BseRI	GAGGAG	2 cut(s)	213, 702
BseXI	GCAGC	7 cut(s)	354, 561, 733, 755, 952, 969, 974
BshFI	GGCC	3 cut(s)	278, 811, 836
BshNI	GGYRCC	1 cut(s)	933
BsiSI	CCGG	2 cut(s)	302, 837
BslI	CCNNNNNNNGG	2 cut(s)	559, 807
BsmAI	GTCTC	1 cut(s)	191
BsnI	GGCC	3 cut(s)	278, 811, 836
Bsp1286I	GDGCHC	1 cut(s)	858
Bsp143I	GATC	3 cut(s)	148, 256, 475
Bsp19I	CCATGG	2 cut(s)	540, 765
BspACI	CCGC	5 cut(s)	290, 296, 403, 406, 439
BspANI	GGCC	3 cut(s)	278, 811, 836
BspCNI	CTCAG	3 cut(s)	265, 667, 870
BspLI	GGNNCC	3 cut(s)	258, 711, 935
BspMAI	CTGCAG	1 cut(s)	751
BspMI	ACCTGC	1 cut(s)	631
BspPI	GGATC	3 cut(s)	251, 264, 483
BspT107I	GGYRCC	1 cut(s)	933
BspTI	CTTAAG	1 cut(s)	788
BsrBI	CCGCTC	1 cut(s)	441
BsrFI	RCCGGY	1 cut(s)	301
BsrI	ACTGG	2 cut(s)	92, 736
BssAI	RCCGGY	1 cut(s)	301
BssECI	CCNNGG	8 cut(s)	15, 178, 279, 540, 705, 713, 765, 812
BssMI	GATC	3 cut(s)	148, 256, 475
BssT1I	CCWWGG	6 cut(s)	178, 279, 540, 705, 765, 812
Bst4CI	ACNGT	5 cut(s)	531, 612, 636, 886, 949
Bst6I	CTCTTC	1 cut(s)	800
BstAFI	CTTAAG	1 cut(s)	788
BstAPI	GCANNNNNTGC	1 cut(s)	532
BstC8I	GCNNGC	2 cut(s)	410, 938
BstDEI	CTNAG	3 cut(s)	273, 675, 857
BstDSI	CCRYGG	3 cut(s)	15, 540, 765
BstF5I	GGATG	1 cut(s)	958
BstHHI	GCGC	2 cut(s)	399, 987
BstKTI	GATC	3 cut(s)	151, 259, 478
BstMAI	GTCTC	1 cut(s)	191
BstMBI	GATC	3 cut(s)	148, 256, 475
BstMWI	GCNNNNNNNGC	4 cut(s)	11, 54, 405, 532
BstSCI	CCNGG	1 cut(s)	836
BstSFI	CTRYAG	1 cut(s)	747
BstV1I	GCAGC	7 cut(s)	354, 561, 733, 755, 952, 969, 974
BstV2I	GAAGAC	1 cut(s)	654
BstX2I	RGATCY	1 cut(s)	256
BstYI	RGATCY	1 cut(s)	256
Bsu36I	CCTNAGG	1 cut(s)	273
BsuI	GTATCC	1 cut(s)	692
BsuRI	GGCC	3 cut(s)	278, 811, 836
BtgI	CCRYGG	3 cut(s)	15, 540, 765
BtsCI	GGATG	1 cut(s)	958
BtsIMutI	CAGTG	5 cut(s)	641, 743, 865, 882, 945
BveI	ACCTGC	1 cut(s)	631
Cac8I	GCNNGC	2 cut(s)	410, 938
CaiI	CAGNNNCTG	1 cut(s)	968
CfoI	GCGC	2 cut(s)	399, 987
Cfr10I	RCCGGY	1 cut(s)	301
Cfr13I	GGNCC	1 cut(s)	898
CseI	GACGC	1 cut(s)	327
Csp6I	GTAC	3 cut(s)	333, 424, 581
CviAII	CATG	4 cut(s)	376, 541, 766, 779
CviQI	GTAC	3 cut(s)	333, 424, 581
DdeI	CTNAG	3 cut(s)	273, 675, 857
DpnI	GATC	3 cut(s)	150, 258, 477
DpnII	GATC	3 cut(s)	148, 256, 475
DriI	GACNNNNNGTC	1 cut(s)	700
EaeI	YGGCCR	1 cut(s)	834
Eam1104I	CTCTTC	1 cut(s)	800
Eam1105I	GACNNNNNGTC	1 cut(s)	700
EarI	CTCTTC	1 cut(s)	800
Eco130I	CCWWGG	6 cut(s)	178, 279, 540, 705, 765, 812
Eco147I	AGGCCT	2 cut(s)	278, 811
Eco24I	GRGCYC	1 cut(s)	858
Eco47I	GGWCC	1 cut(s)	898
Eco81I	CCTNAGG	1 cut(s)	273
EcoRI	GAATTC	1 cut(s)	990
EcoT14I	CCWWGG	6 cut(s)	178, 279, 540, 705, 765, 812
EcoT38I	GRGCYC	1 cut(s)	858
ErhI	CCWWGG	6 cut(s)	178, 279, 540, 705, 765, 812
FaeI	CATG	4 cut(s)	379, 544, 769, 782
FatI	CATG	4 cut(s)	375, 540, 765, 778
FauI	CCCGC	1 cut(s)	297
FbaI	TGATCA	1 cut(s)	148
FblI	GTMKAC	1 cut(s)	316
Fnu4HI	GCNGC	8 cut(s)	343, 406, 550, 744, 747, 963, 966, 983
FokI	GGATG	1 cut(s)	965
FriOI	GRGCYC	1 cut(s)	858
Fsp4HI	GCNGC	8 cut(s)	343, 406, 550, 744, 747, 963, 966, 983
FspBI	CTAG	2 cut(s)	521, 813
FspI	TGCGCA	1 cut(s)	986
GlaI	GCGC	2 cut(s)	398, 986
GluI	GCNGC	8 cut(s)	343, 406, 550, 744, 747, 963, 966, 983
HaeIII	GGCC	3 cut(s)	278, 811, 836
HapII	CCGG	2 cut(s)	302, 837
HgaI	GACGC	1 cut(s)	327
HhaI	GCGC	2 cut(s)	399, 987
Hin1II	CATG	4 cut(s)	379, 544, 769, 782
Hin6I	GCGC	2 cut(s)	397, 985
HinP1I	GCGC	2 cut(s)	397, 985
HpaII	CCGG	2 cut(s)	302, 837
HphI	GGTGA	4 cut(s)	167, 261, 860, 871
Hpy166II	GTNNAC	3 cut(s)	22, 317, 772
Hpy188I	TCNGA	2 cut(s)	676, 717
Hpy188III	TCNNGA	3 cut(s)	122, 146, 995
Hpy8I	GTNNAC	3 cut(s)	22, 317, 772
Hpy99I	CGWCG	3 cut(s)	333, 631, 698
HpyAV	CCTTC	6 cut(s)	90, 237, 241, 508, 875, 923
HpyCH4III	ACNGT	5 cut(s)	531, 612, 636, 886, 949
HpyCH4IV	ACGT	1 cut(s)	455
HpyCH4V	TGCA	6 cut(s)	57, 77, 238, 535, 749, 962
HpyF10VI	GCNNNNNNNGC	4 cut(s)	11, 54, 405, 532
HpyF3I	CTNAG	3 cut(s)	273, 675, 857
HpySE526I	ACGT	1 cut(s)	455
Hsp92II	CATG	4 cut(s)	379, 544, 769, 782
HspAI	GCGC	2 cut(s)	397, 985
Ksp22I	TGATCA	1 cut(s)	148
Kzo9I	GATC	3 cut(s)	148, 256, 475
LmnI	GCTCC	5 cut(s)	394, 497, 517, 715, 717
Lsp1109I	GCAGC	7 cut(s)	354, 561, 733, 755, 952, 969, 974
LweI	GCATC	2 cut(s)	438, 491
MaeI	CTAG	2 cut(s)	521, 813
MaeII	ACGT	1 cut(s)	455
MaeIII	GTNAC	3 cut(s)	638, 760, 877
MalI	GATC	3 cut(s)	150, 258, 477
MbiI	CCGCTC	1 cut(s)	441
MboI	GATC	3 cut(s)	148, 256, 475
MboII	GAAGA	5 cut(s)	368, 654, 817, 838, 938
MflI	RGATCY	1 cut(s)	256
MhlI	GDGCHC	1 cut(s)	858
MluCI	AATT	5 cut(s)	196, 486, 501, 957, 990
MmeI	TCCRAC	1 cut(s)	118
MseI	TTAA	4 cut(s)	504, 789, 918, 972
MslI	CAYNNNNRTG	3 cut(s)	389, 758, 873
MspA1I	CMGCKG	2 cut(s)	746, 965
MspCI	CTTAAG	1 cut(s)	788
MspI	CCGG	2 cut(s)	302, 837
MspR9I	CCNGG	1 cut(s)	838
MwoI	GCNNNNNNNGC	4 cut(s)	11, 54, 405, 532
NciI	CCSGG	1 cut(s)	838
NcoI	CCATGG	2 cut(s)	540, 765
NdeII	GATC	3 cut(s)	148, 256, 475
NlaIII	CATG	4 cut(s)	379, 544, 769, 782
NlaIV	GGNNCC	3 cut(s)	258, 711, 935
NmuCI	GTSAC	2 cut(s)	760, 877
NsbI	TGCGCA	1 cut(s)	986
PaqCI	CACCTGC	1 cut(s)	631
PceI	AGGCCT	2 cut(s)	278, 811
PcsI	WCGNNNNNNNCGW	1 cut(s)	325
PkrI	GCNGC	8 cut(s)	344, 407, 551, 745, 748, 964, 967, 984
PspN4I	GGNNCC	3 cut(s)	258, 711, 935
PspPI	GGNCC	1 cut(s)	898
PstI	CTGCAG	1 cut(s)	751
PstNI	CAGNNNCTG	1 cut(s)	968
PsuI	RGATCY	1 cut(s)	256
PvuII	CAGCTG	2 cut(s)	746, 965
RsaI	GTAC	3 cut(s)	334, 425, 582
RsaNI	GTAC	3 cut(s)	333, 424, 581
RseI	CAYNNNNRTG	3 cut(s)	389, 758, 873
SaqAI	TTAA	4 cut(s)	504, 789, 918, 972
SatI	GCNGC	8 cut(s)	343, 406, 550, 744, 747, 963, 966, 983
Sau3AI	GATC	3 cut(s)	148, 256, 475
Sau96I	GGNCC	1 cut(s)	898
ScrFI	CCNGG	1 cut(s)	838
SduI	GDGCHC	1 cut(s)	858
SfaNI	GCATC	2 cut(s)	438, 491
SfcI	CTRYAG	1 cut(s)	747
SinI	GGWCC	1 cut(s)	898
SmiMI	CAYNNNNRTG	3 cut(s)	389, 758, 873
SmlI	CTYRAG	1 cut(s)	788
SmoI	CTYRAG	1 cut(s)	788
Sse9I	AATT	5 cut(s)	196, 486, 501, 957, 990
SseBI	AGGCCT	2 cut(s)	278, 811
SsiI	CCGC	5 cut(s)	290, 296, 403, 406, 439
SspI	AATATT	1 cut(s)	118
SspMI	CTAG	2 cut(s)	521, 813
StuI	AGGCCT	2 cut(s)	278, 811
StyD4I	CCNGG	1 cut(s)	836
StyI	CCWWGG	6 cut(s)	178, 279, 540, 705, 765, 812
TaaI	ACNGT	5 cut(s)	531, 612, 636, 886, 949
TaiI	ACGT	1 cut(s)	458
TasI	AATT	5 cut(s)	196, 486, 501, 957, 990
TauI	GCSGC	1 cut(s)	408
Tru1I	TTAA	4 cut(s)	504, 789, 918, 972
Tru9I	TTAA	4 cut(s)	504, 789, 918, 972
TscAI	CASTG	5 cut(s)	641, 743, 865, 889, 952
TseFI	GTSAC	2 cut(s)	760, 877
TseI	GCWGC	7 cut(s)	342, 549, 743, 746, 962, 965, 982
Tsp45I	GTSAC	2 cut(s)	760, 877
TspDTI	ATGAA	6 cut(s)	207, 431, 642, 906, 969, 990
TspRI	CASTG	5 cut(s)	641, 743, 865, 889, 952
Vha464I	CTTAAG	1 cut(s)	788
VpaK11BI	GGWCC	1 cut(s)	898
XapI	RAATTY	1 cut(s)	990
XmaJI	CCTAGG	1 cut(s)	812
XmiI	GTMKAC	1 cut(s)	316
XspI	CTAG	2 cut(s)	521, 813

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.