Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000165

Orthogroup ID

OG0002598

Physical Location & Seq

Genomic Coordinates Reverse (-)

110694 .. 112206

Gene Structure 1513 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_165G00436990.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1020 bp

ATGGCGCTAGATGCCGTCGTTTTCCCTCAAGATCCTTTTACTTACGCTACTAACAAAGACCTCTACAACTTGTTAGCAGGGAATTGGAGCTGTGATGATCATGATGATCATCAGCAGCAGCATCTGCTGCAAGAAGCCTCTTTTGATTTTCTCGGCAACCAAACAGATCACCATTTCACGACTTACTGCTCACCTCCTTCAATCGTTCCGCATTTCGACGATTTGCAGCTCTCCAATTCAAACCCAGATGGCTCAACCGACTTTGATCAAGCTCAGTTACAACTTCCATTAGTGGAGGATACTGGTCCGACGACCACCATTCGTCCGAAACGGAGGCGTGCCAAGAGCAAAAAGAACAAGGAGGAGATTGAGAACCAGAGAATGACGCACATTGCTGTTGAGCGCAACAGAAGAAAACAAATGAATGAGTATCTCTCTGCCCTTCGATCTATAATGCCCGATTCATATGTCCAGAGGGGTGACCAAGCATCAATCATTGGGGGTGCTATTAACTTTGTGAAGGAGCTAGAGCAACAAGTGCAATTCCTCGGTGCTCAAAAGCCAAACAATAACAATTCGGATTTGCCTTTCTCAGACTTCTTTAGCTTTCCACAATACTCATCATCAGCAACTAGTACCAGTACTAGTACTGCTCATCAGACTAGTCATGAAAATCGATACGATTCTGATCAGAGGCCGTCGGTTGAGCACAAGTACGCGGCGGACATGAATGTGAGGGTTGCAGCAGACATTGAGGTGACTATGGTGGAGAGCCATGCAAACCTCAAGGTCAGATCCAAAAGGGTTCCGAAGCAGCTCTTGAAGTTTGTTTCTGGGTTGCACACACTACGCCTGACCATTCTTCACCTCAATGTTGCTACTGTTGACGAAATTGTCCTTTATTCTCTAAGTGTCAAGGTAGAAGAGGACTGCGCGTTGACTTCAGTGGATGAAATTGCGACAGCTGTGTATCAGATGCTAGCTAGGATTCAGGAAGAGGCTATGTTGCATTTGAATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HLH

Protein Analysis

339

Amino Acids

38.4

Weight (kDa)

5.49

Isoelectric Point (pI)

50.17

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HLH	PF00010	126 - 177	2.4e-12	Helix-loop-helix DNA-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002598)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G22490 AT1G22490 AT1G72210 AT1G72210
fragaria_vesca	FvH4_5g36240 FvH4_5g36240 FvH4_6g05440 FvH4_6g05440
malus_domestica	MD04G1208700.v1.1 MD08G1190500.v1.1 MD12G1223000.v1.1 MD15G1377800.v1.1
prunus_persica	Prupe.1G524500_v2.0.a1 Prupe.1G524500_v2.0.a1 Prupe.6G329600_v2.0.a1 Prupe.6G329600_v2.0.a1
pyrus_communis	pycom04g18480 pycom08g16370 pycom12g20890 pycom15g33850
rosa_chinensis	RchiOBHm_Chr3g0454211 RchiOBHm_Chr7g0238141
rosa_laevigata	RLG00000000939 RLG00000025476
rosa_multiflora	Rmu_sc0007628.1_g000004
rosa_roxburghii	Rroxscaffold_165G00436990 Rroxscaffold_3G00223340 Rroxscaffold_6G00425370
rosa_rugosa	Rorug02G0653500 Rorug07G0310500
rosa_samantha	Rh3AG056600 Rh3BG058100 Rh3CG057300 Rh3DG058600 Rh7AG466000 Rh7BG436700 Rh7CG484000 Rh7DG452400
rosa_wichuraiana	Rw3G004360 Rw7G038590

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	893
AccII	CGCG	2 cut(s)	719, 935
AciI	CCGC	3 cut(s)	209, 719, 722
AclWI	GGATC	2 cut(s)	26, 789
AcuI	CTGAAG	1 cut(s)	927
AfaI	GTAC	4 cut(s)	637, 643, 649, 716
AgsI	TTSAA	4 cut(s)	201, 240, 823, 1015
AhlI	ACTAGT	3 cut(s)	632, 644, 662
AluBI	AGCT	8 cut(s)	90, 229, 272, 526, 606, 817, 965, 983
AluI	AGCT	8 cut(s)	90, 229, 272, 526, 606, 817, 965, 983
Alw21I	GWGCWC	2 cut(s)	556, 711
AlwI	GGATC	2 cut(s)	26, 789
AlwNI	CAGNNNCTG	1 cut(s)	124
AoxI	GGCC	1 cut(s)	695
ApeKI	GCWGC	6 cut(s)	115, 118, 127, 226, 743, 814
AspLEI	GCGC	3 cut(s)	7, 405, 935
AspS9I	GGNCC	1 cut(s)	305
AsuHPI	GGTGA	5 cut(s)	161, 183, 491, 769, 857
AsuNHI	GCTAGC	1 cut(s)	979
AvaII	GGWCC	1 cut(s)	305
Bbv12I	GWGCWC	2 cut(s)	556, 711
BbvI	GCAGC	6 cut(s)	114, 127, 130, 238, 755, 826
BccI	CCATC	1 cut(s)	242
BceAI	ACGGC	1 cut(s)	682
BciVI	GTATCC	1 cut(s)	292
BclI	TGATCA	4 cut(s)	97, 106, 265, 688
BcuI	ACTAGT	3 cut(s)	632, 644, 662
BfaI	CTAG	7 cut(s)	8, 527, 633, 645, 663, 980, 984
BfoI	RGCGCY	1 cut(s)	8
BfuI	GTATCC	1 cut(s)	292
BisI	GCNGC	7 cut(s)	116, 119, 128, 227, 720, 744, 815
BlsI	GCNGC	7 cut(s)	117, 120, 129, 228, 721, 745, 816
BmcAI	AGTACT	2 cut(s)	643, 649
Bme18I	GGWCC	1 cut(s)	305
BmgT120I	GGNCC	1 cut(s)	305
BmiI	GGNNCC	1 cut(s)	807
BmsI	GCATC	3 cut(s)	130, 497, 966
BmtI	GCTAGC	1 cut(s)	983
BplI	GAGNNNNNCTC	2 cut(s)	419, 451
BpuEI	CTTGAG	2 cut(s)	12, 770
Bsa29I	ATCGAT	1 cut(s)	676
BsaBI	GATNNNNATC	2 cut(s)	108, 687
BsaJI	CCNNGG	1 cut(s)	547
Bse1I	ACTGG	2 cut(s)	307, 639
Bse3DI	GCAATG	1 cut(s)	390
Bse8I	GATNNNNATC	2 cut(s)	108, 687
BseCI	ATCGAT	1 cut(s)	676
BseDI	CCNNGG	1 cut(s)	547
BseGI	GGATG	1 cut(s)	955
BseJI	GATNNNNATC	2 cut(s)	108, 687
BseMI	GCAATG	1 cut(s)	390
BseMII	CTCAG	2 cut(s)	287, 606
BseNI	ACTGG	2 cut(s)	307, 639
BseRI	GAGGAG	1 cut(s)	377
BseXI	GCAGC	6 cut(s)	114, 127, 130, 238, 755, 826
Bsh1236I	CGCG	2 cut(s)	719, 935
BshFI	GGCC	1 cut(s)	697
BshVI	ATCGAT	1 cut(s)	676
BsiHKAI	GWGCWC	2 cut(s)	556, 711
BsnI	GGCC	1 cut(s)	697
Bsp1286I	GDGCHC	2 cut(s)	556, 711
Bsp143I	GATC	8 cut(s)	31, 97, 106, 166, 265, 446, 688, 794
BspACI	CCGC	3 cut(s)	209, 719, 722
BspANI	GGCC	1 cut(s)	697
BspCNI	CTCAG	2 cut(s)	286, 605
BspDI	ATCGAT	1 cut(s)	676
BspFNI	CGCG	2 cut(s)	719, 935
BspHI	TCATGA	2 cut(s)	100, 667
BspLI	GGNNCC	1 cut(s)	807
BspOI	GCTAGC	1 cut(s)	983
BspPI	GGATC	2 cut(s)	26, 789
BsrDI	GCAATG	1 cut(s)	390
BsrI	ACTGG	2 cut(s)	307, 639
BssECI	CCNNGG	1 cut(s)	547
BssMI	GATC	8 cut(s)	31, 97, 106, 166, 265, 446, 688, 794
Bst4CI	ACNGT	1 cut(s)	883
Bst6I	CTCTTC	2 cut(s)	918, 990
BstAPI	GCANNNNNTGC	3 cut(s)	124, 127, 538
BstC8I	GCNNGC	2 cut(s)	339, 981
BstDEI	CTNAG	3 cut(s)	273, 592, 908
BstEII	GGTNACC	1 cut(s)	479
BstF5I	GGATG	1 cut(s)	955
BstFNI	CGCG	2 cut(s)	719, 935
BstH2I	RGCGCY	1 cut(s)	8
BstHHI	GCGC	3 cut(s)	7, 405, 935
BstKTI	GATC	8 cut(s)	34, 100, 109, 169, 268, 449, 691, 797
BstMBI	GATC	8 cut(s)	31, 97, 106, 166, 265, 446, 688, 794
BstMWI	GCNNNNNNNGC	4 cut(s)	11, 124, 127, 538
BstPI	GGTNACC	1 cut(s)	479
BstUI	CGCG	2 cut(s)	719, 935
BstV1I	GCAGC	6 cut(s)	114, 127, 130, 238, 755, 826
BstX2I	RGATCY	2 cut(s)	31, 794
BstYI	RGATCY	2 cut(s)	31, 794
Bsu15I	ATCGAT	1 cut(s)	676
BsuI	GTATCC	1 cut(s)	292
BsuRI	GGCC	1 cut(s)	697
BsuTUI	ATCGAT	1 cut(s)	676
BtsCI	GGATG	1 cut(s)	955
BtsIMutI	CAGTG	1 cut(s)	951
Cac8I	GCNNGC	2 cut(s)	339, 981
CaiI	CAGNNNCTG	1 cut(s)	124
CciI	TCATGA	2 cut(s)	100, 667
CfoI	GCGC	3 cut(s)	7, 405, 935
Cfr13I	GGNCC	1 cut(s)	305
ClaI	ATCGAT	1 cut(s)	676
CseI	GACGC	1 cut(s)	394
Csp6I	GTAC	4 cut(s)	636, 642, 648, 715
CviAII	CATG	4 cut(s)	101, 668, 727, 776
CviQI	GTAC	4 cut(s)	636, 642, 648, 715
DdeI	CTNAG	3 cut(s)	273, 592, 908
DpnI	GATC	8 cut(s)	33, 99, 108, 168, 267, 448, 690, 796
DpnII	GATC	8 cut(s)	31, 97, 106, 166, 265, 446, 688, 794
DrdI	GACNNNNNNGTC	1 cut(s)	893
DseDI	GACNNNNNNGTC	1 cut(s)	893
Eam1104I	CTCTTC	2 cut(s)	918, 990
EarI	CTCTTC	2 cut(s)	918, 990
EciI	GGCGGA	1 cut(s)	737
Eco47I	GGWCC	1 cut(s)	305
Eco57I	CTGAAG	1 cut(s)	927
Eco91I	GGTNACC	1 cut(s)	479
EcoO65I	GGTNACC	1 cut(s)	479
FaeI	CATG	4 cut(s)	104, 671, 730, 779
FaiI	YATR	9 cut(s)	102, 452, 466, 468, 669, 728, 764, 777, 1004
FalI	AAGNNNNNCTT	2 cut(s)	803, 835
FatI	CATG	4 cut(s)	100, 667, 726, 775
FauNDI	CATATG	1 cut(s)	466
FbaI	TGATCA	4 cut(s)	97, 106, 265, 688
Fnu4HI	GCNGC	7 cut(s)	116, 119, 128, 227, 720, 744, 815
FokI	GGATG	1 cut(s)	962
Fsp4HI	GCNGC	7 cut(s)	116, 119, 128, 227, 720, 744, 815
FspBI	CTAG	7 cut(s)	8, 527, 633, 645, 663, 980, 984
GlaI	GCGC	3 cut(s)	6, 404, 934
GluI	GCNGC	7 cut(s)	116, 119, 128, 227, 720, 744, 815
HaeII	RGCGCY	1 cut(s)	8
HaeIII	GGCC	1 cut(s)	697
HgaI	GACGC	1 cut(s)	394
HhaI	GCGC	3 cut(s)	7, 405, 935
Hin1II	CATG	4 cut(s)	104, 671, 730, 779
Hin6I	GCGC	3 cut(s)	5, 403, 933
HinP1I	GCGC	3 cut(s)	5, 403, 933
HincII	GTYRAC	2 cut(s)	886, 939
HindII	GTYRAC	2 cut(s)	886, 939
HinfI	GANTC	3 cut(s)	461, 683, 988
HphI	GGTGA	5 cut(s)	161, 183, 491, 769, 857
Hpy166II	GTNNAC	2 cut(s)	886, 939
Hpy188III	TCNNGA	7 cut(s)	29, 101, 178, 472, 668, 820, 992
Hpy8I	GTNNAC	2 cut(s)	886, 939
Hpy99I	CGWCG	4 cut(s)	20, 221, 313, 703
HpyAV	CCTTC	3 cut(s)	207, 452, 514
HpyCH4III	ACNGT	1 cut(s)	883
HpyCH4V	TGCA	7 cut(s)	130, 226, 541, 743, 779, 841, 1009
HpyF10VI	GCNNNNNNNGC	4 cut(s)	11, 124, 127, 538
HpyF3I	CTNAG	3 cut(s)	273, 592, 908
Hsp92II	CATG	4 cut(s)	104, 671, 730, 779
HspAI	GCGC	3 cut(s)	5, 403, 933
Ksp22I	TGATCA	4 cut(s)	97, 106, 265, 688
Kzo9I	GATC	8 cut(s)	31, 97, 106, 166, 265, 446, 688, 794
LmnI	GCTCC	2 cut(s)	87, 523
LpnPI	CCDG	9 cut(s)	63, 258, 288, 389, 485, 652, 819, 866, 977
Lsp1109I	GCAGC	6 cut(s)	114, 127, 130, 238, 755, 826
LweI	GCATC	3 cut(s)	130, 497, 966
MaeI	CTAG	7 cut(s)	8, 527, 633, 645, 663, 980, 984
MaeIII	GTNAC	3 cut(s)	276, 479, 757
MalI	GATC	8 cut(s)	33, 99, 108, 168, 267, 448, 690, 796
MboI	GATC	8 cut(s)	31, 97, 106, 166, 265, 446, 688, 794
MboII	GAAGA	4 cut(s)	423, 854, 935, 1007
MflI	RGATCY	2 cut(s)	31, 794
MhlI	GDGCHC	2 cut(s)	556, 711
MluCI	AATT	7 cut(s)	82, 235, 542, 574, 891, 954, 1015
MmeI	TCCRAC	1 cut(s)	332
MseI	TTAA	1 cut(s)	510
MslI	CAYNNNNRTG	3 cut(s)	731, 755, 870
MspA1I	CMGCKG	1 cut(s)	965
MvnI	CGCG	2 cut(s)	719, 935
MwoI	GCNNNNNNNGC	4 cut(s)	11, 124, 127, 538
NdeI	CATATG	1 cut(s)	466
NdeII	GATC	8 cut(s)	31, 97, 106, 166, 265, 446, 688, 794
NheI	GCTAGC	1 cut(s)	979
NlaIII	CATG	4 cut(s)	104, 671, 730, 779
NlaIV	GGNNCC	1 cut(s)	807
NmeAIII	GCCGAG	1 cut(s)	132
NmuCI	GTSAC	2 cut(s)	479, 757
PagI	TCATGA	2 cut(s)	100, 667
PfeI	GAWTC	3 cut(s)	461, 683, 988
PkrI	GCNGC	7 cut(s)	117, 120, 129, 228, 721, 745, 816
PspEI	GGTNACC	1 cut(s)	479
PspN4I	GGNNCC	1 cut(s)	807
PspPI	GGNCC	1 cut(s)	305
PstNI	CAGNNNCTG	1 cut(s)	124
PsuI	RGATCY	2 cut(s)	31, 794
PvuII	CAGCTG	1 cut(s)	965
RsaI	GTAC	4 cut(s)	637, 643, 649, 716
RsaNI	GTAC	4 cut(s)	636, 642, 648, 715
RseI	CAYNNNNRTG	3 cut(s)	731, 755, 870
SaqAI	TTAA	1 cut(s)	510
SatI	GCNGC	7 cut(s)	116, 119, 128, 227, 720, 744, 815
Sau3AI	GATC	8 cut(s)	31, 97, 106, 166, 265, 446, 688, 794
Sau96I	GGNCC	1 cut(s)	305
ScaI	AGTACT	2 cut(s)	643, 649
SduI	GDGCHC	2 cut(s)	556, 711
SfaNI	GCATC	3 cut(s)	130, 497, 966
SinI	GGWCC	1 cut(s)	305
SmiMI	CAYNNNNRTG	3 cut(s)	731, 755, 870
SmlI	CTYRAG	2 cut(s)	27, 785
SmoI	CTYRAG	2 cut(s)	27, 785
SpeI	ACTAGT	3 cut(s)	632, 644, 662
Sse9I	AATT	7 cut(s)	82, 235, 542, 574, 891, 954, 1015
SsiI	CCGC	3 cut(s)	209, 719, 722
SspMI	CTAG	7 cut(s)	8, 527, 633, 645, 663, 980, 984
TaaI	ACNGT	1 cut(s)	883
TaqI	TCGA	3 cut(s)	216, 445, 676
TasI	AATT	7 cut(s)	82, 235, 542, 574, 891, 954, 1015
TatI	WGTACW	2 cut(s)	641, 647
TauI	GCSGC	1 cut(s)	722
TfiI	GAWTC	3 cut(s)	461, 683, 988
Tru1I	TTAA	1 cut(s)	510
Tru9I	TTAA	1 cut(s)	510
TscAI	CASTG	1 cut(s)	951
TseFI	GTSAC	2 cut(s)	479, 757
TseI	GCWGC	6 cut(s)	115, 118, 127, 226, 743, 814
Tsp45I	GTSAC	2 cut(s)	479, 757
TspDTI	ATGAA	5 cut(s)	437, 453, 684, 743, 966
TspGWI	ACGGA	1 cut(s)	346
TspRI	CASTG	1 cut(s)	951
VpaK11BI	GGWCC	1 cut(s)	305
XspI	CTAG	7 cut(s)	8, 527, 633, 645, 663, 980, 984
ZrmI	AGTACT	2 cut(s)	643, 649

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.