Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7A

Orthogroup ID

OG0002598

Physical Location & Seq

Genomic Coordinates Forward (+)

64308824 .. 64311397

Gene Structure 2574 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7AG466000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 969 bp

ATGGCATTAGAAGCCGTGGTTTACCCAAAAGACTACAACCCATTTAGCTATGTGTGCAAAGATTTCTACTCCCTTGCACCTTCTAACTGGGGCTATGATTTTAGCTTACAAGAAAATATTCAAGACAAAGCCCTTGTTGGACTTCTTGATCATCAGTATAACAACATACACCATCACCAAGGCAGTCTCAATGAAAATTGGGAGTATAACTGCTCATCATCTCCTCCTTCACTTCTGCAAAATGTGAAGGAATGGGATCCTCATTCCTCACCTGAGGCCTTGGAAACCCCGCCACCGCCACCGCCACCGGCAACAACAGGTAGACGCAAACGCCGTCGTACCAGAAGCAGCAAGAACAAAGAAGAAATGGAGAACCAACGCATGACCCACATTGTAGTGGAGCGCAACCGCCGCAAGCAAATGAACGAGTACCTCGCCGTCCTCCGCTCTTTGATGCCAACGTCTTATGTTCAAAGGGGGGATCAAGCATCAATTATTGGGGGAGCAATTAACTTTGTGAAGGAGCTAGAGCAACTGTTGCAGTCCATGGACGGCAGCCATAAGAGCTCTACTAAGCCAGAACAAGTACCTTTGGCAGAGTTCTTTACCTTTCCACAGTTCTCCACACCTGCGACTACACAGTGTAACAGCAACACTTCATCATCGTCTTCGTCATCATCTGAGGGTATCATAAACGACGAGCCGTCCTTGGCTCCTCTGAGCAACAATAACAACAACCAGTGGCCAGCTGCAGACATAGAAGTGACCATGGTGGACAGCCATGCCAATCTTAAGATATTGTCCAAGAAGAGGCCTAGGCAGTTGTTGAAGATGGTGGCCGGGTTTCAAAGTCTTGGGCTCAGCGTCCTTCACCTCAATGTCACCACTGTTGATGAAATGGTCCTCTACTCTGTTAGTGTTAAGGTAATTAATTCAAAAGTGCTCTCATCTTCTCACTTACTTGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HLH

Protein Analysis

322

Amino Acids

36.16

Weight (kDa)

6.56

Isoelectric Point (pI)

62.17

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HLH	PF00010	126 - 177	6.6e-12	Helix-loop-helix DNA-binding domain
bHLH-TF_ACT-like_plant	PF22754	252 - 309	7.1e-06	Plant bHLH transcription factor, ACT-like domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002598)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G22490 AT1G22490 AT1G72210 AT1G72210
fragaria_vesca	FvH4_5g36240 FvH4_5g36240 FvH4_6g05440 FvH4_6g05440
malus_domestica	MD04G1208700.v1.1 MD08G1190500.v1.1 MD12G1223000.v1.1 MD15G1377800.v1.1
prunus_persica	Prupe.1G524500_v2.0.a1 Prupe.1G524500_v2.0.a1 Prupe.6G329600_v2.0.a1 Prupe.6G329600_v2.0.a1
pyrus_communis	pycom04g18480 pycom08g16370 pycom12g20890 pycom15g33850
rosa_chinensis	RchiOBHm_Chr3g0454211 RchiOBHm_Chr7g0238141
rosa_laevigata	RLG00000000939 RLG00000025476
rosa_multiflora	Rmu_sc0007628.1_g000004
rosa_roxburghii	Rroxscaffold_165G00436990 Rroxscaffold_3G00223340 Rroxscaffold_6G00425370
rosa_rugosa	Rorug02G0653500 Rorug07G0310500
rosa_samantha	Rh3AG056600 Rh3BG058100 Rh3CG057300 Rh3DG058600 Rh7AG466000 Rh7BG436700 Rh7CG484000 Rh7DG452400
rosa_wichuraiana	Rw3G004360 Rw7G038590

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	637
Acc36I	ACCTGC	1 cut(s)	637
AccBSI	CCGCTC	1 cut(s)	447
AccI	GTMKAC	1 cut(s)	322
AciI	CCGC	6 cut(s)	290, 296, 302, 409, 412, 445
AclWI	GGATC	3 cut(s)	251, 264, 489
AcoI	YGGCCR	2 cut(s)	743, 837
AfaI	GTAC	3 cut(s)	340, 431, 588
AfiI	CCNNNNNNNGG	1 cut(s)	810
AflII	CTTAAG	1 cut(s)	791
AgsI	TTSAA	5 cut(s)	122, 473, 829, 848, 936
AhdI	GACNNNNNGTC	1 cut(s)	703
AluBI	AGCT	5 cut(s)	48, 105, 526, 567, 749
AluI	AGCT	5 cut(s)	48, 105, 526, 567, 749
Alw21I	GWGCWC	2 cut(s)	569, 945
Alw26I	GTCTC	1 cut(s)	191
AlwI	GGATC	3 cut(s)	251, 264, 489
AoxI	GGCC	4 cut(s)	276, 743, 812, 837
ApeKI	GCWGC	3 cut(s)	348, 555, 749
AseI	ATTAAT	1 cut(s)	930
Asp700I	GAANNNNTTC	1 cut(s)	117
AspA2I	CCTAGG	1 cut(s)	815
AspLEI	GCGC	1 cut(s)	405
AspS9I	GGNCC	1 cut(s)	901
AsuC2I	CCSGG	1 cut(s)	841
AsuHPI	GGTGA	4 cut(s)	167, 261, 863, 874
AvaII	GGWCC	1 cut(s)	901
AvrII	CCTAGG	1 cut(s)	815
AxyI	CCTNAGG	1 cut(s)	273
BalI	TGGCCA	1 cut(s)	745
BamHI	GGATCC	1 cut(s)	256
BanII	GRGCYC	2 cut(s)	569, 861
BbsI	GAAGAC	1 cut(s)	660
Bbv12I	GWGCWC	2 cut(s)	569, 945
BbvI	GCAGC	3 cut(s)	360, 567, 736
BccI	CCATC	2 cut(s)	180, 826
BceAI	ACGGC	4 cut(s)	318, 422, 568, 688
BclI	TGATCA	1 cut(s)	148
BcnI	CCSGG	1 cut(s)	841
BcoDI	GTCTC	1 cut(s)	191
BfaI	CTAG	2 cut(s)	527, 816
BfmI	CTRYAG	1 cut(s)	750
BfrI	CTTAAG	1 cut(s)	791
BfuAI	ACCTGC	1 cut(s)	637
BisI	GCNGC	4 cut(s)	349, 412, 556, 750
BlnI	CCTAGG	1 cut(s)	815
BlpI	GCTNAGC	1 cut(s)	860
BlsI	GCNGC	4 cut(s)	350, 413, 557, 751
Bme1390I	CCNGG	1 cut(s)	841
Bme18I	GGWCC	1 cut(s)	901
BmeRI	GACNNNNNGTC	1 cut(s)	703
BmgT120I	GGNCC	1 cut(s)	901
BmiI	GGNNCC	2 cut(s)	258, 714
BmrFI	CCNGG	1 cut(s)	841
BmrI	ACTGGG	1 cut(s)	97
BmsI	GCATC	2 cut(s)	444, 497
BmuI	ACTGGG	1 cut(s)	97
BpiI	GAAGAC	1 cut(s)	660
Bpu1102I	GCTNAGC	1 cut(s)	860
BpuMI	CCSGG	1 cut(s)	841
BsaJI	CCNNGG	7 cut(s)	15, 178, 279, 546, 708, 768, 815
Bsc4I	CCNNNNNNNGG	1 cut(s)	810
Bse118I	RCCGGY	1 cut(s)	307
Bse1I	ACTGG	2 cut(s)	92, 739
Bse21I	CCTNAGG	1 cut(s)	273
BseDI	CCNNGG	7 cut(s)	15, 178, 279, 546, 708, 768, 815
BseLI	CCNNNNNNNGG	1 cut(s)	810
BseMII	CTCAG	4 cut(s)	264, 672, 710, 874
BseNI	ACTGG	2 cut(s)	92, 739
BseRI	GAGGAG	2 cut(s)	213, 705
BseXI	GCAGC	3 cut(s)	360, 567, 736
BshFI	GGCC	4 cut(s)	278, 745, 814, 839
BsiHKAI	GWGCWC	2 cut(s)	569, 945
BsiSI	CCGG	2 cut(s)	308, 840
BslI	CCNNNNNNNGG	1 cut(s)	810
BsmAI	GTCTC	1 cut(s)	191
BsnI	GGCC	4 cut(s)	278, 745, 814, 839
Bsp1286I	GDGCHC	3 cut(s)	569, 861, 945
Bsp143I	GATC	3 cut(s)	148, 256, 481
Bsp1720I	GCTNAGC	1 cut(s)	860
Bsp19I	CCATGG	2 cut(s)	546, 768
BspACI	CCGC	6 cut(s)	290, 296, 302, 409, 412, 445
BspANI	GGCC	4 cut(s)	278, 745, 814, 839
BspCNI	CTCAG	4 cut(s)	265, 673, 711, 873
BspLI	GGNNCC	2 cut(s)	258, 714
BspMAI	CTGCAG	1 cut(s)	754
BspMI	ACCTGC	1 cut(s)	637
BspPI	GGATC	3 cut(s)	251, 264, 489
BspTI	CTTAAG	1 cut(s)	791
BsrBI	CCGCTC	1 cut(s)	447
BsrFI	RCCGGY	1 cut(s)	307
BsrI	ACTGG	2 cut(s)	92, 739
BssAI	RCCGGY	1 cut(s)	307
BssECI	CCNNGG	7 cut(s)	15, 178, 279, 546, 708, 768, 815
BssMI	GATC	3 cut(s)	148, 256, 481
BssT1I	CCWWGG	6 cut(s)	178, 279, 546, 708, 768, 815
Bst4CI	ACNGT	4 cut(s)	537, 618, 642, 889
Bst6I	CTCTTC	1 cut(s)	803
BstAFI	CTTAAG	1 cut(s)	791
BstAPI	GCANNNNNTGC	1 cut(s)	538
BstC8I	GCNNGC	2 cut(s)	416, 747
BstDEI	CTNAG	5 cut(s)	273, 573, 681, 719, 860
BstDSI	CCRYGG	3 cut(s)	15, 546, 768
BstHHI	GCGC	1 cut(s)	405
BstKTI	GATC	3 cut(s)	151, 259, 484
BstMAI	GTCTC	1 cut(s)	191
BstMBI	GATC	3 cut(s)	148, 256, 481
BstMWI	GCNNNNNNNGC	5 cut(s)	11, 54, 411, 538, 564
BstSCI	CCNGG	1 cut(s)	839
BstSFI	CTRYAG	1 cut(s)	750
BstV1I	GCAGC	3 cut(s)	360, 567, 736
BstV2I	GAAGAC	1 cut(s)	660
BstX2I	RGATCY	1 cut(s)	256
BstYI	RGATCY	1 cut(s)	256
Bsu36I	CCTNAGG	1 cut(s)	273
BsuRI	GGCC	4 cut(s)	278, 745, 814, 839
BtgI	CCRYGG	3 cut(s)	15, 546, 768
BtsIMutI	CAGTG	3 cut(s)	647, 746, 885
BveI	ACCTGC	1 cut(s)	637
Cac8I	GCNNGC	2 cut(s)	416, 747
CfoI	GCGC	1 cut(s)	405
Cfr10I	RCCGGY	1 cut(s)	307
Cfr13I	GGNCC	1 cut(s)	901
CseI	GACGC	2 cut(s)	333, 853
Csp6I	GTAC	3 cut(s)	339, 430, 587
CviAII	CATG	4 cut(s)	382, 547, 769, 782
CviQI	GTAC	3 cut(s)	339, 430, 587
DdeI	CTNAG	5 cut(s)	273, 573, 681, 719, 860
DpnI	GATC	3 cut(s)	150, 258, 483
DpnII	GATC	3 cut(s)	148, 256, 481
DriI	GACNNNNNGTC	1 cut(s)	703
EaeI	YGGCCR	2 cut(s)	743, 837
Eam1104I	CTCTTC	1 cut(s)	803
Eam1105I	GACNNNNNGTC	1 cut(s)	703
EarI	CTCTTC	1 cut(s)	803
Ecl136II	GAGCTC	1 cut(s)	567
Eco130I	CCWWGG	6 cut(s)	178, 279, 546, 708, 768, 815
Eco147I	AGGCCT	2 cut(s)	278, 814
Eco24I	GRGCYC	2 cut(s)	569, 861
Eco47I	GGWCC	1 cut(s)	901
Eco53kI	GAGCTC	1 cut(s)	567
Eco81I	CCTNAGG	1 cut(s)	273
EcoICRI	GAGCTC	1 cut(s)	567
EcoT14I	CCWWGG	6 cut(s)	178, 279, 546, 708, 768, 815
EcoT38I	GRGCYC	2 cut(s)	569, 861
ErhI	CCWWGG	6 cut(s)	178, 279, 546, 708, 768, 815
FaeI	CATG	4 cut(s)	385, 550, 772, 785
FatI	CATG	4 cut(s)	381, 546, 768, 781
FauI	CCCGC	1 cut(s)	297
FbaI	TGATCA	1 cut(s)	148
FblI	GTMKAC	1 cut(s)	322
Fnu4HI	GCNGC	4 cut(s)	349, 412, 556, 750
FriOI	GRGCYC	2 cut(s)	569, 861
Fsp4HI	GCNGC	4 cut(s)	349, 412, 556, 750
FspBI	CTAG	2 cut(s)	527, 816
GlaI	GCGC	1 cut(s)	404
GluI	GCNGC	4 cut(s)	349, 412, 556, 750
HaeIII	GGCC	4 cut(s)	278, 745, 814, 839
HapII	CCGG	2 cut(s)	308, 840
HgaI	GACGC	2 cut(s)	333, 853
HhaI	GCGC	1 cut(s)	405
Hin1II	CATG	4 cut(s)	385, 550, 772, 785
Hin6I	GCGC	1 cut(s)	403
HinP1I	GCGC	1 cut(s)	403
HpaII	CCGG	2 cut(s)	308, 840
HphI	GGTGA	4 cut(s)	167, 261, 863, 874
Hpy166II	GTNNAC	3 cut(s)	22, 323, 775
Hpy188I	TCNGA	2 cut(s)	682, 720
Hpy188III	TCNNGA	2 cut(s)	122, 146
Hpy8I	GTNNAC	3 cut(s)	22, 323, 775
Hpy99I	CGWCG	2 cut(s)	339, 701
HpyAV	CCTTC	5 cut(s)	90, 237, 241, 514, 878
HpyCH4III	ACNGT	4 cut(s)	537, 618, 642, 889
HpyCH4IV	ACGT	1 cut(s)	461
HpyCH4V	TGCA	5 cut(s)	57, 77, 238, 541, 752
HpyF10VI	GCNNNNNNNGC	5 cut(s)	11, 54, 411, 538, 564
HpyF3I	CTNAG	5 cut(s)	273, 573, 681, 719, 860
HpySE526I	ACGT	1 cut(s)	461
Hsp92II	CATG	4 cut(s)	385, 550, 772, 785
HspAI	GCGC	1 cut(s)	403
Ksp22I	TGATCA	1 cut(s)	148
Kzo9I	GATC	3 cut(s)	148, 256, 481
LmnI	GCTCC	4 cut(s)	400, 503, 523, 718
Lsp1109I	GCAGC	3 cut(s)	360, 567, 736
LweI	GCATC	2 cut(s)	444, 497
MaeI	CTAG	2 cut(s)	527, 816
MaeII	ACGT	1 cut(s)	461
MaeIII	GTNAC	3 cut(s)	644, 763, 880
MalI	GATC	3 cut(s)	150, 258, 483
MbiI	CCGCTC	1 cut(s)	447
MboI	GATC	3 cut(s)	148, 256, 481
MboII	GAAGA	5 cut(s)	374, 660, 820, 841, 942
MflI	RGATCY	1 cut(s)	256
MhlI	GDGCHC	3 cut(s)	569, 861, 945
MlsI	TGGCCA	1 cut(s)	745
MluCI	AATT	5 cut(s)	196, 492, 507, 927, 931
MluNI	TGGCCA	1 cut(s)	745
MmeI	TCCRAC	1 cut(s)	118
Mox20I	TGGCCA	1 cut(s)	745
MroXI	GAANNNNTTC	1 cut(s)	117
MscI	TGGCCA	1 cut(s)	745
MseI	TTAA	4 cut(s)	510, 792, 921, 930
MslI	CAYNNNNRTG	3 cut(s)	395, 761, 876
Msp20I	TGGCCA	1 cut(s)	745
MspA1I	CMGCKG	1 cut(s)	749
MspCI	CTTAAG	1 cut(s)	791
MspI	CCGG	2 cut(s)	308, 840
MspR9I	CCNGG	1 cut(s)	841
MwoI	GCNNNNNNNGC	5 cut(s)	11, 54, 411, 538, 564
NciI	CCSGG	1 cut(s)	841
NcoI	CCATGG	2 cut(s)	546, 768
NdeII	GATC	3 cut(s)	148, 256, 481
NlaIII	CATG	4 cut(s)	385, 550, 772, 785
NlaIV	GGNNCC	2 cut(s)	258, 714
NmuCI	GTSAC	2 cut(s)	763, 880
PaqCI	CACCTGC	1 cut(s)	637
PceI	AGGCCT	2 cut(s)	278, 814
PcsI	WCGNNNNNNNCGW	1 cut(s)	331
PdmI	GAANNNNTTC	1 cut(s)	117
PkrI	GCNGC	4 cut(s)	350, 413, 557, 751
PshBI	ATTAAT	1 cut(s)	930
Psp124BI	GAGCTC	1 cut(s)	569
PspN4I	GGNNCC	2 cut(s)	258, 714
PspPI	GGNCC	1 cut(s)	901
PstI	CTGCAG	1 cut(s)	754
PsuI	RGATCY	1 cut(s)	256
PvuII	CAGCTG	1 cut(s)	749
RsaI	GTAC	3 cut(s)	340, 431, 588
RsaNI	GTAC	3 cut(s)	339, 430, 587
RseI	CAYNNNNRTG	3 cut(s)	395, 761, 876
SacI	GAGCTC	1 cut(s)	569
SaqAI	TTAA	4 cut(s)	510, 792, 921, 930
SatI	GCNGC	4 cut(s)	349, 412, 556, 750
Sau3AI	GATC	3 cut(s)	148, 256, 481
Sau96I	GGNCC	1 cut(s)	901
ScrFI	CCNGG	1 cut(s)	841
SduI	GDGCHC	3 cut(s)	569, 861, 945
SfaNI	GCATC	2 cut(s)	444, 497
SfcI	CTRYAG	1 cut(s)	750
SinI	GGWCC	1 cut(s)	901
SmiMI	CAYNNNNRTG	3 cut(s)	395, 761, 876
SmlI	CTYRAG	1 cut(s)	791
SmoI	CTYRAG	1 cut(s)	791
Sse9I	AATT	5 cut(s)	196, 492, 507, 927, 931
SseBI	AGGCCT	2 cut(s)	278, 814
SsiI	CCGC	6 cut(s)	290, 296, 302, 409, 412, 445
SspI	AATATT	1 cut(s)	118
SspMI	CTAG	2 cut(s)	527, 816
SstI	GAGCTC	1 cut(s)	569
StuI	AGGCCT	2 cut(s)	278, 814
StyD4I	CCNGG	1 cut(s)	839
StyI	CCWWGG	6 cut(s)	178, 279, 546, 708, 768, 815
TaaI	ACNGT	4 cut(s)	537, 618, 642, 889
TaiI	ACGT	1 cut(s)	464
TasI	AATT	5 cut(s)	196, 492, 507, 927, 931
TauI	GCSGC	1 cut(s)	414
Tru1I	TTAA	4 cut(s)	510, 792, 921, 930
Tru9I	TTAA	4 cut(s)	510, 792, 921, 930
TscAI	CASTG	3 cut(s)	647, 746, 892
TseFI	GTSAC	2 cut(s)	763, 880
TseI	GCWGC	3 cut(s)	348, 555, 749
Tsp45I	GTSAC	2 cut(s)	763, 880
TspDTI	ATGAA	4 cut(s)	207, 437, 648, 909
TspRI	CASTG	3 cut(s)	647, 746, 892
Vha464I	CTTAAG	1 cut(s)	791
VpaK11BI	GGWCC	1 cut(s)	901
VspI	ATTAAT	1 cut(s)	930
XmaJI	CCTAGG	1 cut(s)	815
XmiI	GTMKAC	1 cut(s)	322
XmnI	GAANNNNTTC	1 cut(s)	117
XspI	CTAG	2 cut(s)	527, 816

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.