Prupe.6G329600_v2.0.a1

transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp06
OG0002598
Physical Location & Seq
Forward (+)
28817059 .. 28818795
1737 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.6G329600.1

Sequence Viewer

Length: 1032 bp
ATGGCACTTGATGCTGTTGTTTTTCCTCAAGACCCTTTTAGTTGCGCCACAAACAAAGACCTCTACAGCTATTGGAGCTCTTTTGATGATGATCATCATAATTTCGGTTTCGACAACGATCAAGATCATCATGATCAGCTCCAACACCAAGCCTCCCTCGATTTTCTCGGCTACCAAACAGATCATAACCCTCCTAATTATGGTACTAATTACTATTCCTCAGCTCCTTTGAATTCAATGGTGCCACATTTCAACGAATTGCAGCTCTCCAATCCAAACCCAGATGTTAGTGATACTACTAGCCCAACTGATGATCAACCCGAATTTCATCAACTACCATTGGATCAGACAATCACAATGGCTGACAGCATGCCTAGTACTCGTGCCAAACGGCGCCGTGCCAAGAGTAGGAAGAACAAGGAGGAGATTGAGAACCAGAGAATGACTCACATTGCAGTTGAGCGCAATAGAAGAAAACAGATGAATGAGTATCTCTCTGTGCTTCGATCTTTAATGCCAGACTCATACGTTCAAAGGGGAGACCAAGCATCAATCATTGGAGGTGCGATTAATTTTGTGAAGGAGCTAGAGCAAGAAGTGCATTTCCTTGGTACCCAAAAGCCAAATAATGGTGTGCCTTTCTCCCAATTCTTCACCTTCCCTCAATACTCAACCCGGTCCAGCGGAGACCACGAGTCTGCGGCGGCAGCCATGGCTGAGCTGCCTTTGATGGAGTGCAAGCTGAGTAACATTGCAGCTGACATAGAGGTGACAATGGTGGAGAGCCATGCAAGTCTGAAAGTGAGAGCCAAGAGGATCCCAAAGCAGCTCTTGAAGATTGTTTCTGGGTTGCATGGTATGCACCTCACAATTCTTCATCTCAATGTGGTCACTGCTGATGATATTGTCCTCTACTCTCTCAGCCTCAAGGTAGAAGATGAGTGCACACTGGCTTCAGTGGATGAAATTGCAACAGCTGTGCATCAGATGCTAGCTACAATTCAAGAGGAGGCAATGTTGAATTTGAATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
HLH

Protein Analysis

344

Amino Acids

38.69

Weight (kDa)

5.23

Isoelectric Point (pI)

53.27

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 611
AccB1I GGYRCC 3 cut(s) 241, 393, 611
AccB7I CCANNNNNTGG 1 cut(s) 629
AciI CCGC 3 cut(s) 684, 701, 704
AclWI GGATC 3 cut(s) 351, 811, 824
AcsI RAATTY 3 cut(s) 232, 323, 1021
AcuI CTGAAG 1 cut(s) 939
AcyI GRCGYC 1 cut(s) 394
AfaI GTAC 3 cut(s) 205, 379, 613
AfiI CCNNNNNNNGG 3 cut(s) 200, 408, 629
AgsI TTSAA 8 cut(s) 232, 237, 253, 533, 835, 1004, 1021, 1027
AhdI GACNNNNNGTC 1 cut(s) 694
Alw21I GWGCWC 2 cut(s) 80, 947
Alw26I GTCTC 2 cut(s) 534, 681
Alw44I GTGCAC 1 cut(s) 943
AlwI GGATC 3 cut(s) 351, 811, 824
ApaLI GTGCAC 1 cut(s) 943
ApeKI GCWGC 5 cut(s) 262, 707, 721, 755, 826
ApoI RAATTY 3 cut(s) 232, 323, 1021
AseI ATTAAT 1 cut(s) 570
Asp718I GGTACC 1 cut(s) 611
AspLEI GCGC 3 cut(s) 47, 396, 465
AspS9I GGNCC 1 cut(s) 678
AsuC2I CCSGG 1 cut(s) 676
AsuHPI GGTGA 2 cut(s) 646, 781
AsuNHI GCTAGC 1 cut(s) 991
AvaII GGWCC 1 cut(s) 678
BaeGI GKGCMC 1 cut(s) 947
BamHI GGATCC 1 cut(s) 816
BanI GGYRCC 3 cut(s) 241, 393, 611
BanII GRGCYC 1 cut(s) 80
BauI CACGAG 2 cut(s) 381, 692
Bbv12I GWGCWC 2 cut(s) 80, 947
BbvCI CCTCAGC 1 cut(s) 220
BbvI GCAGC 5 cut(s) 274, 708, 719, 767, 838
BccI CCATC 1 cut(s) 724
BceAI ACGGC 2 cut(s) 381, 407
BclI TGATCA 3 cut(s) 91, 133, 313
BcnI CCSGG 1 cut(s) 676
BcoDI GTCTC 2 cut(s) 534, 681
BfaI CTAG 4 cut(s) 300, 375, 587, 992
BfmI CTRYAG 1 cut(s) 64
BfoI RGCGCY 1 cut(s) 397
BisI GCNGC 7 cut(s) 263, 702, 705, 708, 722, 756, 827
BlpI GCTNAGC 1 cut(s) 717
BlsI GCNGC 7 cut(s) 264, 703, 706, 709, 723, 757, 828
BmcAI AGTACT 1 cut(s) 379
Bme1390I CCNGG 1 cut(s) 676
Bme18I GGWCC 1 cut(s) 678
BmeRI GACNNNNNGTC 1 cut(s) 694
BmgT120I GGNCC 1 cut(s) 678
BmiI GGNNCC 4 cut(s) 243, 395, 613, 818
BmrFI CCNGG 1 cut(s) 676
BmsI GCATC 3 cut(s) 557, 978, 991
BmtI GCTAGC 1 cut(s) 995
BplI GAGNNNNNCTC 4 cut(s) 430, 462, 479, 511
Bpu10I CCTNAGC 1 cut(s) 220
Bpu1102I GCTNAGC 1 cut(s) 717
BpuEI CTTGAG 2 cut(s) 12, 911
BpuMI CCSGG 1 cut(s) 676
BsaBI GATNNNNATC 3 cut(s) 90, 93, 123
BsaHI GRCGYC 1 cut(s) 394
BsaI GGTCTC 2 cut(s) 534, 681
BsaJI CCNNGG 2 cut(s) 607, 711
BsaXI ACNNNNNCTCC 4 cut(s) 137, 167, 1001, 1031
Bsc4I CCNNNNNNNGG 3 cut(s) 200, 408, 629
Bse1I ACTGG 1 cut(s) 954
Bse3DI GCAATG 3 cut(s) 450, 750, 1020
Bse8I GATNNNNATC 3 cut(s) 90, 93, 123
BseDI CCNNGG 2 cut(s) 607, 711
BseGI GGATG 1 cut(s) 967
BseJI GATNNNNATC 3 cut(s) 90, 93, 123
BseLI CCNNNNNNNGG 3 cut(s) 200, 408, 629
BseMI GCAATG 3 cut(s) 450, 750, 1020
BseMII CTCAG 4 cut(s) 234, 708, 734, 934
BseNI ACTGG 1 cut(s) 954
BseRI GAGGAG 2 cut(s) 437, 1022
BseSI GKGCMC 1 cut(s) 947
BseXI GCAGC 5 cut(s) 274, 708, 719, 767, 838
BshNI GGYRCC 3 cut(s) 241, 393, 611
BsiHKAI GWGCWC 2 cut(s) 80, 947
BsiSI CCGG 1 cut(s) 676
BslI CCNNNNNNNGG 3 cut(s) 200, 408, 629
BsmAI GTCTC 2 cut(s) 534, 681
Bso31I GGTCTC 2 cut(s) 534, 681
Bsp1286I GDGCHC 2 cut(s) 80, 947
Bsp143I GATC 9 cut(s) 91, 118, 124, 133, 181, 313, 343, 506, 816
Bsp1720I GCTNAGC 1 cut(s) 717
Bsp19I CCATGG 1 cut(s) 711
BspACI CCGC 3 cut(s) 684, 701, 704
BspCNI CTCAG 4 cut(s) 233, 709, 735, 933
BspHI TCATGA 1 cut(s) 130
BspLI GGNNCC 4 cut(s) 243, 395, 613, 818
BspOI GCTAGC 1 cut(s) 995
BspPI GGATC 3 cut(s) 351, 811, 824
BspT107I GGYRCC 3 cut(s) 241, 393, 611
BspTNI GGTCTC 2 cut(s) 534, 681
BsrDI GCAATG 3 cut(s) 450, 750, 1020
BsrI ACTGG 1 cut(s) 954
BssECI CCNNGG 2 cut(s) 607, 711
BssMI GATC 9 cut(s) 91, 118, 124, 133, 181, 313, 343, 506, 816
BssNI GRCGYC 1 cut(s) 394
BssSI CACGAG 2 cut(s) 381, 692
BssT1I CCWWGG 2 cut(s) 607, 711
Bst2BI CACGAG 2 cut(s) 381, 692
BstACI GRCGYC 1 cut(s) 394
BstAPI GCANNNNNTGC 4 cut(s) 11, 598, 859, 988
BstC8I GCNNGC 3 cut(s) 371, 740, 993
BstDEI CTNAG 4 cut(s) 220, 717, 743, 920
BstDSI CCRYGG 1 cut(s) 711
BstF5I GGATG 1 cut(s) 967
BstH2I RGCGCY 1 cut(s) 397
BstHHI GCGC 3 cut(s) 47, 396, 465
BstKTI GATC 9 cut(s) 94, 121, 127, 136, 184, 316, 346, 509, 819
BstMAI GTCTC 2 cut(s) 534, 681
BstMBI GATC 9 cut(s) 91, 118, 124, 133, 181, 313, 343, 506, 816
BstMWI GCNNNNNNNGC 7 cut(s) 11, 75, 598, 707, 713, 859, 988
BstNSI RCATGY 1 cut(s) 373
BstSCI CCNGG 1 cut(s) 674
BstSFI CTRYAG 1 cut(s) 64
BstSLI GKGCMC 1 cut(s) 947
BstV1I GCAGC 5 cut(s) 274, 708, 719, 767, 838
BstX2I RGATCY 1 cut(s) 816
BstYI RGATCY 1 cut(s) 816
BtgI CCRYGG 1 cut(s) 711
BtsCI GGATG 1 cut(s) 967
BtsI GCAGTG 1 cut(s) 891
BtsIMutI CAGTG 3 cut(s) 891, 947, 963
Cac8I GCNNGC 3 cut(s) 371, 740, 993
CciI TCATGA 1 cut(s) 130
CfoI GCGC 3 cut(s) 47, 396, 465
Cfr13I GGNCC 1 cut(s) 678
Csp6I GTAC 3 cut(s) 204, 378, 612
CviAII CATG 5 cut(s) 131, 370, 712, 788, 854
CviQI GTAC 3 cut(s) 204, 378, 612
DdeI CTNAG 4 cut(s) 220, 717, 743, 920
DinI GGCGCC 1 cut(s) 395
DpnI GATC 9 cut(s) 93, 120, 126, 135, 183, 315, 345, 508, 818
DpnII GATC 9 cut(s) 91, 118, 124, 133, 181, 313, 343, 506, 816
DriI GACNNNNNGTC 1 cut(s) 694
Eam1105I GACNNNNNGTC 1 cut(s) 694
Ecl136II GAGCTC 1 cut(s) 78
Eco130I CCWWGG 2 cut(s) 607, 711
Eco24I GRGCYC 1 cut(s) 80
Eco31I GGTCTC 2 cut(s) 534, 681
Eco47I GGWCC 1 cut(s) 678
Eco53kI GAGCTC 1 cut(s) 78
Eco57I CTGAAG 1 cut(s) 939
EcoICRI GAGCTC 1 cut(s) 78
EcoRI GAATTC 1 cut(s) 232
EcoT14I CCWWGG 2 cut(s) 607, 711
EcoT38I GRGCYC 1 cut(s) 80
EgeI GGCGCC 1 cut(s) 395
EheI GGCGCC 1 cut(s) 395
ErhI CCWWGG 2 cut(s) 607, 711
FaeI CATG 5 cut(s) 134, 373, 715, 791, 857
FalI AAGNNNNNCTT 2 cut(s) 815, 847
FatI CATG 5 cut(s) 130, 369, 711, 787, 853
FbaI TGATCA 3 cut(s) 91, 133, 313
Fnu4HI GCNGC 7 cut(s) 263, 702, 705, 708, 722, 756, 827
FokI GGATG 1 cut(s) 974
FriOI GRGCYC 1 cut(s) 80
Fsp4HI GCNGC 7 cut(s) 263, 702, 705, 708, 722, 756, 827
FspBI CTAG 4 cut(s) 300, 375, 587, 992
GlaI GCGC 3 cut(s) 46, 395, 464
GluI GCNGC 7 cut(s) 263, 702, 705, 708, 722, 756, 827
HaeII RGCGCY 1 cut(s) 397
HapII CCGG 1 cut(s) 676
HhaI GCGC 3 cut(s) 47, 396, 465
Hin1I GRCGYC 1 cut(s) 394
Hin1II CATG 5 cut(s) 134, 373, 715, 791, 857
Hin6I GCGC 3 cut(s) 45, 394, 463
HinP1I GCGC 3 cut(s) 45, 394, 463
HinfI GANTC 3 cut(s) 445, 521, 695
HpaII CCGG 1 cut(s) 676
HphI GGTGA 2 cut(s) 646, 781
Hpy166II GTNNAC 1 cut(s) 945
Hpy188I TCNGA 3 cut(s) 348, 798, 987
Hpy188III TCNNGA 5 cut(s) 29, 122, 131, 832, 1004
Hpy8I GTNNAC 1 cut(s) 945
HpyAV CCTTC 2 cut(s) 574, 667
HpyCH4IV ACGT 1 cut(s) 528
HpyF10VI GCNNNNNNNGC 7 cut(s) 11, 75, 598, 707, 713, 859, 988
HpyF3I CTNAG 4 cut(s) 220, 717, 743, 920
HpySE526I ACGT 1 cut(s) 528
Hsp92I GRCGYC 1 cut(s) 394
Hsp92II CATG 5 cut(s) 134, 373, 715, 791, 857
HspAI GCGC 3 cut(s) 45, 394, 463
KasI GGCGCC 1 cut(s) 393
KpnI GGTACC 1 cut(s) 615
Ksp22I TGATCA 3 cut(s) 91, 133, 313
Kzo9I GATC 9 cut(s) 91, 118, 124, 133, 181, 313, 343, 506, 816
LmnI GCTCC 4 cut(s) 75, 144, 229, 583
LpnPI CCDG 7 cut(s) 294, 449, 531, 689, 694, 831, 935
Lsp1109I GCAGC 5 cut(s) 274, 708, 719, 767, 838
LweI GCATC 3 cut(s) 557, 978, 991
MaeI CTAG 4 cut(s) 300, 375, 587, 992
MaeII ACGT 1 cut(s) 528
MaeIII GTNAC 3 cut(s) 746, 769, 889
MalI GATC 9 cut(s) 93, 120, 126, 135, 183, 315, 345, 508, 818
MboI GATC 9 cut(s) 91, 118, 124, 133, 181, 313, 343, 506, 816
MboII GAAGA 6 cut(s) 424, 483, 643, 847, 866, 947
MflI RGATCY 1 cut(s) 816
MhlI GDGCHC 2 cut(s) 80, 947
Mly113I GGCGCC 1 cut(s) 394
MlyI GAGTC 3 cut(s) 439, 515, 704
MmeI TCCRAC 1 cut(s) 166
MseI TTAA 2 cut(s) 512, 570
MslI CAYNNNNRTG 2 cut(s) 767, 882
MspA1I CMGCKG 3 cut(s) 684, 758, 977
MspI CCGG 1 cut(s) 676
MspR9I CCNGG 1 cut(s) 676
MwoI GCNNNNNNNGC 7 cut(s) 11, 75, 598, 707, 713, 859, 988
NarI GGCGCC 1 cut(s) 394
NciI CCSGG 1 cut(s) 676
NcoI CCATGG 1 cut(s) 711
NdeII GATC 9 cut(s) 91, 118, 124, 133, 181, 313, 343, 506, 816
NheI GCTAGC 1 cut(s) 991
NlaIII CATG 5 cut(s) 134, 373, 715, 791, 857
NlaIV GGNNCC 4 cut(s) 243, 395, 613, 818
NmeAIII GCCGAG 1 cut(s) 147
NmuCI GTSAC 2 cut(s) 769, 889
NspI RCATGY 1 cut(s) 373
PaeI GCATGC 1 cut(s) 373
PagI TCATGA 1 cut(s) 130
PflMI CCANNNNNTGG 1 cut(s) 629
PkrI GCNGC 7 cut(s) 264, 703, 706, 709, 723, 757, 828
PleI GAGTC 3 cut(s) 439, 515, 703
PluTI GGCGCC 1 cut(s) 397
PpsI GAGTC 3 cut(s) 439, 515, 703
PshBI ATTAAT 1 cut(s) 570
Psp124BI GAGCTC 1 cut(s) 80
PspN4I GGNNCC 4 cut(s) 243, 395, 613, 818
PspPI GGNCC 1 cut(s) 678
PsuI RGATCY 1 cut(s) 816
PvuII CAGCTG 2 cut(s) 758, 977
RsaI GTAC 3 cut(s) 205, 379, 613
RsaNI GTAC 3 cut(s) 204, 378, 612
RseI CAYNNNNRTG 2 cut(s) 767, 882
SacI GAGCTC 1 cut(s) 80
SaqAI TTAA 2 cut(s) 512, 570
SatI GCNGC 7 cut(s) 263, 702, 705, 708, 722, 756, 827
Sau3AI GATC 9 cut(s) 91, 118, 124, 133, 181, 313, 343, 506, 816
Sau96I GGNCC 1 cut(s) 678
ScaI AGTACT 1 cut(s) 379
SchI GAGTC 3 cut(s) 439, 515, 704
ScrFI CCNGG 1 cut(s) 676
SduI GDGCHC 2 cut(s) 80, 947
SfaNI GCATC 3 cut(s) 557, 978, 991
SfcI CTRYAG 1 cut(s) 64
SfoI GGCGCC 1 cut(s) 395
SinI GGWCC 1 cut(s) 678
SmiMI CAYNNNNRTG 2 cut(s) 767, 882
SmlI CTYRAG 2 cut(s) 27, 926
SmoI CTYRAG 2 cut(s) 27, 926
SphI GCATGC 1 cut(s) 373
SsiI CCGC 3 cut(s) 684, 701, 704
SspDI GGCGCC 1 cut(s) 393
SspMI CTAG 4 cut(s) 300, 375, 587, 992
SstI GAGCTC 1 cut(s) 80
StyD4I CCNGG 1 cut(s) 674
StyI CCWWGG 2 cut(s) 607, 711
TaiI ACGT 1 cut(s) 531
TaqI TCGA 3 cut(s) 111, 159, 505
TatI WGTACW 1 cut(s) 377
TauI GCSGC 2 cut(s) 704, 707
Tru1I TTAA 2 cut(s) 512, 570
Tru9I TTAA 2 cut(s) 512, 570
TscAI CASTG 3 cut(s) 898, 954, 963
TseFI GTSAC 2 cut(s) 769, 889
TseI GCWGC 5 cut(s) 262, 707, 721, 755, 826
Tsp45I GTSAC 2 cut(s) 769, 889
TspDTI ATGAA 4 cut(s) 317, 497, 866, 978
TspRI CASTG 3 cut(s) 898, 954, 963
Van91I CCANNNNNTGG 1 cut(s) 629
VneI GTGCAC 1 cut(s) 943
VpaK11BI GGWCC 1 cut(s) 678
VspI ATTAAT 1 cut(s) 570
XapI RAATTY 3 cut(s) 232, 323, 1021
XceI RCATGY 1 cut(s) 373
XspI CTAG 4 cut(s) 300, 375, 587, 992
ZrmI AGTACT 1 cut(s) 379
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.