Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr7

Orthogroup ID

OG0002598

Physical Location & Seq

Genomic Coordinates Forward (+)

59024799 .. 59027035

Gene Structure 2237 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw7G038590.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 654 bp

ATGGAGAACCAACGCATGACCCACATTGTAGTGGAGCGCAACCGCCGCAAGCAAATGAACGAGTACCTCGCCGTCCTCCGCTCTTTGATGCCAACGTCTTATGTTCAAAGGGGGGATCAAGCATCAATTATTGGGGGAGCAATTAACTTTGTGAAGGAGCTAGAGCAACTGTTGCAGTCCATGGACGGCAGCCATAAGAGCTCTACTAAGCCAGAACAAGTACCTTTGGCAGAGTTCTTTACCTTTCCACAGTTCTCCACACCTGCGACGACACAGTGTAACAGCAACACTTCATCATCGTCTTCGTCATCATCTGAGGGTATCCAAATAAACGACGAGCCGTCCTTGGCTCCTCGGAGCAACAATAACAACAACCAGTGGCCAGCTGCAGACATAGAAGTGACCATGGTGGACAGCCATGCCAATCTTAAGATATTGTCCAAGAAGAGGCCTAGGCAGTTGTTGAAGATGGTGGCCGGGTTTCAAAGTCTTGGGCTCAGTGTCCTTCACCTCAATGTCACCACTGTTGATGAAATGGTCCTCTACTCTGTTAGTGTTAAGATTGAAGAAGGGTGCCTGCTAAACACTGTGGATGAAATTGCAACTGCTGTTAATGAAATGCTGCGCAGAATTCAAGAAGCTGGTTTTAGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HLH

Protein Analysis

217

Amino Acids

24.11

Weight (kDa)

5.84

Isoelectric Point (pI)

55.6

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HLH	PF00010	4 - 55	3.4e-12	Helix-loop-helix DNA-binding domain
bHLH-TF_ACT-like_plant	PF22754	131 - 206	6.8e-07	Plant bHLH transcription factor, ACT-like domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002598)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G22490 AT1G22490 AT1G72210 AT1G72210
fragaria_vesca	FvH4_5g36240 FvH4_5g36240 FvH4_6g05440 FvH4_6g05440
malus_domestica	MD04G1208700.v1.1 MD08G1190500.v1.1 MD12G1223000.v1.1 MD15G1377800.v1.1
prunus_persica	Prupe.1G524500_v2.0.a1 Prupe.1G524500_v2.0.a1 Prupe.6G329600_v2.0.a1 Prupe.6G329600_v2.0.a1
pyrus_communis	pycom04g18480 pycom08g16370 pycom12g20890 pycom15g33850
rosa_chinensis	RchiOBHm_Chr3g0454211 RchiOBHm_Chr7g0238141
rosa_laevigata	RLG00000000939 RLG00000025476
rosa_multiflora	Rmu_sc0007628.1_g000004
rosa_roxburghii	Rroxscaffold_165G00436990 Rroxscaffold_3G00223340 Rroxscaffold_6G00425370
rosa_rugosa	Rorug02G0653500 Rorug07G0310500
rosa_samantha	Rh3AG056600 Rh3BG058100 Rh3CG057300 Rh3DG058600 Rh7AG466000 Rh7BG436700 Rh7CG484000 Rh7DG452400
rosa_wichuraiana	Rw3G004360 Rw7G038590

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	271
Acc16I	TGCGCA	1 cut(s)	626
Acc36I	ACCTGC	1 cut(s)	271
AccB1I	GGYRCC	1 cut(s)	573
AccBSI	CCGCTC	1 cut(s)	81
AciI	CCGC	3 cut(s)	43, 46, 79
AclWI	GGATC	1 cut(s)	123
AcoI	YGGCCR	2 cut(s)	380, 474
AcsI	RAATTY	1 cut(s)	630
AfaI	GTAC	2 cut(s)	65, 222
AfiI	CCNNNNNNNGG	1 cut(s)	447
AflII	CTTAAG	1 cut(s)	428
AgsI	TTSAA	5 cut(s)	107, 466, 485, 566, 635
AhdI	GACNNNNNGTC	1 cut(s)	340
AluBI	AGCT	5 cut(s)	160, 201, 386, 641, 651
AluI	AGCT	5 cut(s)	160, 201, 386, 641, 651
Alw21I	GWGCWC	1 cut(s)	203
AlwI	GGATC	1 cut(s)	123
AoxI	GGCC	3 cut(s)	380, 449, 474
ApeKI	GCWGC	3 cut(s)	189, 386, 622
ApoI	RAATTY	1 cut(s)	630
AspA2I	CCTAGG	1 cut(s)	452
AspLEI	GCGC	2 cut(s)	39, 627
AspS9I	GGNCC	1 cut(s)	538
AsuC2I	CCSGG	1 cut(s)	478
AsuHPI	GGTGA	2 cut(s)	500, 511
AvaII	GGWCC	1 cut(s)	538
AvrII	CCTAGG	1 cut(s)	452
BalI	TGGCCA	1 cut(s)	382
BanI	GGYRCC	1 cut(s)	573
BanII	GRGCYC	2 cut(s)	203, 498
BbsI	GAAGAC	1 cut(s)	294
Bbv12I	GWGCWC	1 cut(s)	203
BbvI	GCAGC	3 cut(s)	201, 373, 609
BccI	CCATC	1 cut(s)	463
BceAI	ACGGC	3 cut(s)	56, 202, 325
BciVI	GTATCC	1 cut(s)	332
BcnI	CCSGG	1 cut(s)	478
BfaI	CTAG	2 cut(s)	161, 453
BfmI	CTRYAG	1 cut(s)	387
BfrI	CTTAAG	1 cut(s)	428
BfuAI	ACCTGC	1 cut(s)	271
BfuI	GTATCC	1 cut(s)	332
BisI	GCNGC	4 cut(s)	46, 190, 387, 623
BlnI	CCTAGG	1 cut(s)	452
BlsI	GCNGC	4 cut(s)	47, 191, 388, 624
Bme1390I	CCNGG	1 cut(s)	478
Bme18I	GGWCC	1 cut(s)	538
BmeRI	GACNNNNNGTC	1 cut(s)	340
BmgT120I	GGNCC	1 cut(s)	538
BmiI	GGNNCC	2 cut(s)	351, 575
BmrFI	CCNGG	1 cut(s)	478
BmsI	GCATC	2 cut(s)	78, 131
BpiI	GAAGAC	1 cut(s)	294
BpuMI	CCSGG	1 cut(s)	478
BsaJI	CCNNGG	5 cut(s)	180, 345, 353, 405, 452
Bsc4I	CCNNNNNNNGG	1 cut(s)	447
Bse1I	ACTGG	1 cut(s)	376
BseDI	CCNNGG	5 cut(s)	180, 345, 353, 405, 452
BseGI	GGATG	1 cut(s)	598
BseLI	CCNNNNNNNGG	1 cut(s)	447
BseMII	CTCAG	2 cut(s)	306, 511
BseNI	ACTGG	1 cut(s)	376
BseRI	GAGGAG	1 cut(s)	342
BseXI	GCAGC	3 cut(s)	201, 373, 609
BshFI	GGCC	3 cut(s)	382, 451, 476
BshNI	GGYRCC	1 cut(s)	573
BsiHKAI	GWGCWC	1 cut(s)	203
BsiSI	CCGG	1 cut(s)	477
BslI	CCNNNNNNNGG	1 cut(s)	447
BsnI	GGCC	3 cut(s)	382, 451, 476
Bsp1286I	GDGCHC	2 cut(s)	203, 498
Bsp143I	GATC	1 cut(s)	115
Bsp19I	CCATGG	2 cut(s)	180, 405
BspACI	CCGC	3 cut(s)	43, 46, 79
BspANI	GGCC	3 cut(s)	382, 451, 476
BspCNI	CTCAG	2 cut(s)	307, 510
BspLI	GGNNCC	2 cut(s)	351, 575
BspMAI	CTGCAG	1 cut(s)	391
BspMI	ACCTGC	1 cut(s)	271
BspPI	GGATC	1 cut(s)	123
BspT107I	GGYRCC	1 cut(s)	573
BspTI	CTTAAG	1 cut(s)	428
BsrBI	CCGCTC	1 cut(s)	81
BsrI	ACTGG	1 cut(s)	376
BssECI	CCNNGG	5 cut(s)	180, 345, 353, 405, 452
BssMI	GATC	1 cut(s)	115
BssT1I	CCWWGG	4 cut(s)	180, 345, 405, 452
Bst4CI	ACNGT	5 cut(s)	171, 252, 276, 526, 589
Bst6I	CTCTTC	1 cut(s)	440
BstAFI	CTTAAG	1 cut(s)	428
BstAPI	GCANNNNNTGC	1 cut(s)	172
BstC8I	GCNNGC	3 cut(s)	50, 384, 578
BstDEI	CTNAG	3 cut(s)	207, 315, 497
BstDSI	CCRYGG	2 cut(s)	180, 405
BstF5I	GGATG	1 cut(s)	598
BstHHI	GCGC	2 cut(s)	39, 627
BstKTI	GATC	1 cut(s)	118
BstMBI	GATC	1 cut(s)	115
BstMWI	GCNNNNNNNGC	3 cut(s)	45, 172, 198
BstSCI	CCNGG	1 cut(s)	476
BstSFI	CTRYAG	1 cut(s)	387
BstV1I	GCAGC	3 cut(s)	201, 373, 609
BstV2I	GAAGAC	1 cut(s)	294
BsuI	GTATCC	1 cut(s)	332
BsuRI	GGCC	3 cut(s)	382, 451, 476
BtgI	CCRYGG	2 cut(s)	180, 405
BtsCI	GGATG	1 cut(s)	598
BtsIMutI	CAGTG	5 cut(s)	281, 383, 505, 522, 585
BveI	ACCTGC	1 cut(s)	271
Cac8I	GCNNGC	3 cut(s)	50, 384, 578
CfoI	GCGC	2 cut(s)	39, 627
Cfr13I	GGNCC	1 cut(s)	538
Csp6I	GTAC	2 cut(s)	64, 221
CviAII	CATG	4 cut(s)	16, 181, 406, 419
CviQI	GTAC	2 cut(s)	64, 221
DdeI	CTNAG	3 cut(s)	207, 315, 497
DpnI	GATC	1 cut(s)	117
DpnII	GATC	1 cut(s)	115
DriI	GACNNNNNGTC	1 cut(s)	340
EaeI	YGGCCR	2 cut(s)	380, 474
Eam1104I	CTCTTC	1 cut(s)	440
Eam1105I	GACNNNNNGTC	1 cut(s)	340
EarI	CTCTTC	1 cut(s)	440
Ecl136II	GAGCTC	1 cut(s)	201
Eco130I	CCWWGG	4 cut(s)	180, 345, 405, 452
Eco147I	AGGCCT	1 cut(s)	451
Eco24I	GRGCYC	2 cut(s)	203, 498
Eco47I	GGWCC	1 cut(s)	538
Eco53kI	GAGCTC	1 cut(s)	201
EcoICRI	GAGCTC	1 cut(s)	201
EcoRI	GAATTC	1 cut(s)	630
EcoT14I	CCWWGG	4 cut(s)	180, 345, 405, 452
EcoT38I	GRGCYC	2 cut(s)	203, 498
ErhI	CCWWGG	4 cut(s)	180, 345, 405, 452
FaeI	CATG	4 cut(s)	19, 184, 409, 422
FaiI	YATR	7 cut(s)	17, 102, 182, 195, 395, 407, 420
FatI	CATG	4 cut(s)	15, 180, 405, 418
Fnu4HI	GCNGC	4 cut(s)	46, 190, 387, 623
FokI	GGATG	1 cut(s)	605
FriOI	GRGCYC	2 cut(s)	203, 498
Fsp4HI	GCNGC	4 cut(s)	46, 190, 387, 623
FspBI	CTAG	2 cut(s)	161, 453
FspI	TGCGCA	1 cut(s)	626
GlaI	GCGC	2 cut(s)	38, 626
GluI	GCNGC	4 cut(s)	46, 190, 387, 623
HaeIII	GGCC	3 cut(s)	382, 451, 476
HapII	CCGG	1 cut(s)	477
HhaI	GCGC	2 cut(s)	39, 627
Hin1II	CATG	4 cut(s)	19, 184, 409, 422
Hin6I	GCGC	2 cut(s)	37, 625
HinP1I	GCGC	2 cut(s)	37, 625
HpaII	CCGG	1 cut(s)	477
HphI	GGTGA	2 cut(s)	500, 511
Hpy166II	GTNNAC	1 cut(s)	412
Hpy188I	TCNGA	2 cut(s)	316, 357
Hpy188III	TCNNGA	1 cut(s)	635
Hpy8I	GTNNAC	1 cut(s)	412
Hpy99I	CGWCG	2 cut(s)	271, 338
HpyAV	CCTTC	3 cut(s)	148, 515, 563
HpyCH4III	ACNGT	5 cut(s)	171, 252, 276, 526, 589
HpyCH4IV	ACGT	1 cut(s)	95
HpyCH4V	TGCA	3 cut(s)	175, 389, 602
HpyF10VI	GCNNNNNNNGC	3 cut(s)	45, 172, 198
HpyF3I	CTNAG	3 cut(s)	207, 315, 497
HpySE526I	ACGT	1 cut(s)	95
Hsp92II	CATG	4 cut(s)	19, 184, 409, 422
HspAI	GCGC	2 cut(s)	37, 625
Kzo9I	GATC	1 cut(s)	115
LmnI	GCTCC	5 cut(s)	34, 137, 157, 355, 357
LpnPI	CCDG	7 cut(s)	225, 276, 389, 396, 490, 590, 627
Lsp1109I	GCAGC	3 cut(s)	201, 373, 609
LweI	GCATC	2 cut(s)	78, 131
MaeI	CTAG	2 cut(s)	161, 453
MaeII	ACGT	1 cut(s)	95
MaeIII	GTNAC	3 cut(s)	278, 400, 517
MalI	GATC	1 cut(s)	117
MbiI	CCGCTC	1 cut(s)	81
MboI	GATC	1 cut(s)	115
MboII	GAAGA	4 cut(s)	294, 457, 478, 578
MhlI	GDGCHC	2 cut(s)	203, 498
MlsI	TGGCCA	1 cut(s)	382
MluCI	AATT	4 cut(s)	126, 141, 597, 630
MluNI	TGGCCA	1 cut(s)	382
MnlI	CCTC	7 cut(s)	77, 86, 310, 363, 441, 521, 551
Mox20I	TGGCCA	1 cut(s)	382
MscI	TGGCCA	1 cut(s)	382
MseI	TTAA	4 cut(s)	144, 429, 558, 612
MslI	CAYNNNNRTG	3 cut(s)	29, 398, 513
Msp20I	TGGCCA	1 cut(s)	382
MspA1I	CMGCKG	1 cut(s)	386
MspCI	CTTAAG	1 cut(s)	428
MspI	CCGG	1 cut(s)	477
MspR9I	CCNGG	1 cut(s)	478
MwoI	GCNNNNNNNGC	3 cut(s)	45, 172, 198
NciI	CCSGG	1 cut(s)	478
NcoI	CCATGG	2 cut(s)	180, 405
NdeII	GATC	1 cut(s)	115
NlaIII	CATG	4 cut(s)	19, 184, 409, 422
NlaIV	GGNNCC	2 cut(s)	351, 575
NmuCI	GTSAC	2 cut(s)	400, 517
NsbI	TGCGCA	1 cut(s)	626
PaqCI	CACCTGC	1 cut(s)	271
PceI	AGGCCT	1 cut(s)	451
PkrI	GCNGC	4 cut(s)	47, 191, 388, 624
Psp124BI	GAGCTC	1 cut(s)	203
PspN4I	GGNNCC	2 cut(s)	351, 575
PspPI	GGNCC	1 cut(s)	538
PstI	CTGCAG	1 cut(s)	391
PvuII	CAGCTG	1 cut(s)	386
RsaI	GTAC	2 cut(s)	65, 222
RsaNI	GTAC	2 cut(s)	64, 221
RseI	CAYNNNNRTG	3 cut(s)	29, 398, 513
SacI	GAGCTC	1 cut(s)	203
SaqAI	TTAA	4 cut(s)	144, 429, 558, 612
SatI	GCNGC	4 cut(s)	46, 190, 387, 623
Sau3AI	GATC	1 cut(s)	115
Sau96I	GGNCC	1 cut(s)	538
ScrFI	CCNGG	1 cut(s)	478
SduI	GDGCHC	2 cut(s)	203, 498
SfaNI	GCATC	2 cut(s)	78, 131
SfcI	CTRYAG	1 cut(s)	387
SinI	GGWCC	1 cut(s)	538
SmiMI	CAYNNNNRTG	3 cut(s)	29, 398, 513
SmlI	CTYRAG	1 cut(s)	428
SmoI	CTYRAG	1 cut(s)	428
Sse9I	AATT	4 cut(s)	126, 141, 597, 630
SseBI	AGGCCT	1 cut(s)	451
SsiI	CCGC	3 cut(s)	43, 46, 79
SspMI	CTAG	2 cut(s)	161, 453
SstI	GAGCTC	1 cut(s)	203
StuI	AGGCCT	1 cut(s)	451
StyD4I	CCNGG	1 cut(s)	476
StyI	CCWWGG	4 cut(s)	180, 345, 405, 452
TaaI	ACNGT	5 cut(s)	171, 252, 276, 526, 589
TaiI	ACGT	1 cut(s)	98
TasI	AATT	4 cut(s)	126, 141, 597, 630
TauI	GCSGC	1 cut(s)	48
Tru1I	TTAA	4 cut(s)	144, 429, 558, 612
Tru9I	TTAA	4 cut(s)	144, 429, 558, 612
TscAI	CASTG	5 cut(s)	281, 383, 505, 529, 592
TseFI	GTSAC	2 cut(s)	400, 517
TseI	GCWGC	3 cut(s)	189, 386, 622
Tsp45I	GTSAC	2 cut(s)	400, 517
TspDTI	ATGAA	5 cut(s)	71, 282, 546, 609, 630
TspRI	CASTG	5 cut(s)	281, 383, 505, 529, 592
Vha464I	CTTAAG	1 cut(s)	428
VpaK11BI	GGWCC	1 cut(s)	538
XapI	RAATTY	1 cut(s)	630
XmaJI	CCTAGG	1 cut(s)	452
XspI	CTAG	2 cut(s)	161, 453

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.