Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr15

Orthogroup ID

OG0002598

Physical Location & Seq

Genomic Coordinates Reverse (-)

46293311 .. 46295901

Gene Structure 2591 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD15G1377800.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 933 bp

ATGACATTAGAAGCTGTGGTTTACCCACAAGAGTACCCATTTAGCTTTGGTTGCAAAGACTTCTACTCTTTTAATGGGGGTGGTTCTTGGGGCAGTGACTTCATCTCACAAGACCAGCAAGGCAACAATGAATATTGGGACTACTGTTCATCATCTCCTTCACTTTTGCAAAATGTGAAAGATTGGGATCCTAACTCCTCACCTGAGGCCTGCACAGTTGATCAATCTTGCCCATCAGGACAACACCTCTCTGCCATGGAAGCACCGCCGCAACTAGCAACAACAAGTCGGCGCAAACGGCGTCGTACCAAGAGCAGCAAGAACAAGGAGGAAATTGAGAACCAGAGGATGACGCACATTGTTGTGGAGCGCAACAGGCGCAAACAAATGAATGAGTACCTTGCTGTCCTCAGATCATTGATGCCACAATCTTATGCTCCAAGGGGGGACCAAGCATCAATTGTTGGGGGTGCCATAAACTTTGTGAAGGAGCTAGAGCAGCTTTTTCAGTCCATGAACAGCAACAAGAGGAGCAAGCAACAGCCTTTGGCTGACTTCTTCACCTTCCCACAATTTTCAACTCGTGCAACACAGAATAACAACTCAGCTGGGGTCCAAGCAAATGAGTCGAATACGACTCAGTGTAACAACAACCAGTGGGCAGCAGCAGACATAGAAGTGACCATGGTGGACAACCATGCCAACCTTAAGATACTGTCCAAGAAAAGGCCTAGACAGCTATTGAAGATGGTGGCTGGATTTCAAAGCCTTAGGCTCAGTGTTCTTCACCTTAATGTCACCACAGCTGATGAAATGGTCCTCTACTCGGTTAGCGTTAAGATTGAAGAAGGCTGCCCGTTAAATACAGTGGATGAAATAGCAGCAGCTGTTAATCAAATGCTCCGCACAATTCAAGAAGCTGCCTTTAGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HLH

Protein Analysis

311

Amino Acids

34.86

Weight (kDa)

6.9

Isoelectric Point (pI)

64.77

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HLH	PF00010	115 - 166	1e-11	Helix-loop-helix DNA-binding domain
bHLH-TF_ACT-like_plant	PF22754	224 - 300	8.9e-07	Plant bHLH transcription factor, ACT-like domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002598)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G22490 AT1G22490 AT1G72210 AT1G72210
fragaria_vesca	FvH4_5g36240 FvH4_5g36240 FvH4_6g05440 FvH4_6g05440
malus_domestica	MD04G1208700.v1.1 MD08G1190500.v1.1 MD12G1223000.v1.1 MD15G1377800.v1.1
prunus_persica	Prupe.1G524500_v2.0.a1 Prupe.1G524500_v2.0.a1 Prupe.6G329600_v2.0.a1 Prupe.6G329600_v2.0.a1
pyrus_communis	pycom04g18480 pycom08g16370 pycom12g20890 pycom15g33850
rosa_chinensis	RchiOBHm_Chr3g0454211 RchiOBHm_Chr7g0238141
rosa_laevigata	RLG00000000939 RLG00000025476
rosa_multiflora	Rmu_sc0007628.1_g000004
rosa_roxburghii	Rroxscaffold_165G00436990 Rroxscaffold_3G00223340 Rroxscaffold_6G00425370
rosa_rugosa	Rorug02G0653500 Rorug07G0310500
rosa_samantha	Rh3AG056600 Rh3BG058100 Rh3CG057300 Rh3DG058600 Rh7AG466000 Rh7BG436700 Rh7CG484000 Rh7DG452400
rosa_wichuraiana	Rw3G004360 Rw7G038590

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	470
AciI	CCGC	3 cut(s)	266, 269, 904
AclWI	GGATC	2 cut(s)	182, 195
AcyI	GRCGYC	1 cut(s)	301
AfaI	GTAC	3 cut(s)	35, 307, 398
AfiI	CCNNNNNNNGG	2 cut(s)	726, 826
AflII	CTTAAG	1 cut(s)	707
AgsI	TTSAA	5 cut(s)	579, 745, 764, 845, 914
AlwI	GGATC	2 cut(s)	182, 195
AlwNI	CAGNNNCTG	1 cut(s)	887
AoxI	GGCC	2 cut(s)	207, 728
ApeKI	GCWGC	8 cut(s)	315, 499, 662, 665, 852, 881, 884, 920
AspLEI	GCGC	3 cut(s)	294, 372, 381
AspS9I	GGNCC	3 cut(s)	448, 613, 817
AsuHPI	GGTGA	4 cut(s)	192, 553, 779, 790
AvaII	GGWCC	3 cut(s)	448, 613, 817
AxyI	CCTNAGG	2 cut(s)	204, 770
BaeI	ACNNNNGTAYC	2 cut(s)	17, 50
BamHI	GGATCC	1 cut(s)	187
BanI	GGYRCC	1 cut(s)	470
BauI	CACGAG	1 cut(s)	582
BbvI	GCAGC	8 cut(s)	327, 511, 674, 677, 839, 893, 896, 907
BccI	CCATC	2 cut(s)	241, 742
BceAI	ACGGC	1 cut(s)	314
BcgI	CGANNNNNNTGC	2 cut(s)	609, 643
BclI	TGATCA	1 cut(s)	220
BfaI	CTAG	3 cut(s)	275, 494, 732
BfrI	CTTAAG	1 cut(s)	707
BisI	GCNGC	9 cut(s)	269, 316, 500, 663, 666, 853, 882, 885, 921
BlsI	GCNGC	9 cut(s)	270, 317, 501, 664, 667, 854, 883, 886, 922
Bme18I	GGWCC	3 cut(s)	448, 613, 817
BmgT120I	GGNCC	3 cut(s)	448, 613, 817
BmiI	GGNNCC	4 cut(s)	189, 449, 472, 614
BmsI	GCATC	2 cut(s)	411, 464
BsaBI	GATNNNNATC	1 cut(s)	186
BsaHI	GRCGYC	1 cut(s)	301
BsaJI	CCNNGG	3 cut(s)	255, 440, 684
Bsc4I	CCNNNNNNNGG	2 cut(s)	726, 826
Bse1I	ACTGG	1 cut(s)	655
Bse21I	CCTNAGG	2 cut(s)	204, 770
Bse8I	GATNNNNATC	1 cut(s)	186
BseDI	CCNNGG	3 cut(s)	255, 440, 684
BseGI	GGATG	2 cut(s)	354, 877
BseJI	GATNNNNATC	1 cut(s)	186
BseLI	CCNNNNNNNGG	2 cut(s)	726, 826
BseMII	CTCAG	5 cut(s)	195, 424, 618, 653, 790
BseNI	ACTGG	1 cut(s)	655
BseRI	GAGGAG	2 cut(s)	187, 544
BseXI	GCAGC	8 cut(s)	327, 511, 674, 677, 839, 893, 896, 907
BseYI	CCCAGC	1 cut(s)	608
BsgI	GTGCAG	1 cut(s)	196
BshFI	GGCC	2 cut(s)	209, 730
BshNI	GGYRCC	1 cut(s)	470
BslFI	GGGAC	2 cut(s)	152, 461
BslI	CCNNNNNNNGG	2 cut(s)	726, 826
BsmFI	GGGAC	2 cut(s)	152, 461
BsnI	GGCC	2 cut(s)	209, 730
Bsp143I	GATC	3 cut(s)	187, 220, 413
Bsp19I	CCATGG	2 cut(s)	255, 684
BspACI	CCGC	3 cut(s)	266, 269, 904
BspANI	GGCC	2 cut(s)	209, 730
BspCNI	CTCAG	5 cut(s)	196, 423, 617, 652, 789
BspLI	GGNNCC	4 cut(s)	189, 449, 472, 614
BspPI	GGATC	2 cut(s)	182, 195
BspT107I	GGYRCC	1 cut(s)	470
BspTI	CTTAAG	1 cut(s)	707
BsrI	ACTGG	1 cut(s)	655
BssECI	CCNNGG	3 cut(s)	255, 440, 684
BssMI	GATC	3 cut(s)	187, 220, 413
BssNI	GRCGYC	1 cut(s)	301
BssSI	CACGAG	1 cut(s)	582
BssT1I	CCWWGG	3 cut(s)	255, 440, 684
Bst2BI	CACGAG	1 cut(s)	582
Bst4CI	ACNGT	4 cut(s)	146, 217, 717, 868
BstACI	GRCGYC	1 cut(s)	301
BstAFI	CTTAAG	1 cut(s)	707
BstC8I	GCNNGC	2 cut(s)	211, 536
BstDEI	CTNAG	6 cut(s)	204, 410, 604, 639, 770, 776
BstDSI	CCRYGG	2 cut(s)	255, 684
BstF5I	GGATG	2 cut(s)	354, 877
BstHHI	GCGC	3 cut(s)	294, 372, 381
BstKTI	GATC	3 cut(s)	190, 223, 416
BstMBI	GATC	3 cut(s)	187, 220, 413
BstMWI	GCNNNNNNNGC	7 cut(s)	51, 260, 298, 376, 378, 499, 736
BstV1I	GCAGC	8 cut(s)	327, 511, 674, 677, 839, 893, 896, 907
BstX2I	RGATCY	1 cut(s)	187
BstYI	RGATCY	1 cut(s)	187
Bsu36I	CCTNAGG	2 cut(s)	204, 770
BsuRI	GGCC	2 cut(s)	209, 730
BtgI	CCRYGG	2 cut(s)	255, 684
BtsCI	GGATG	2 cut(s)	354, 877
BtsI	GCAGTG	1 cut(s)	100
BtsIMutI	CAGTG	5 cut(s)	100, 647, 662, 784, 873
Cac8I	GCNNGC	2 cut(s)	211, 536
CaiI	CAGNNNCTG	1 cut(s)	887
CfoI	GCGC	3 cut(s)	294, 372, 381
Cfr13I	GGNCC	3 cut(s)	448, 613, 817
CseI	GACGC	2 cut(s)	290, 361
Csp6I	GTAC	3 cut(s)	34, 306, 397
CviAII	CATG	4 cut(s)	256, 514, 685, 698
CviQI	GTAC	3 cut(s)	34, 306, 397
DdeI	CTNAG	6 cut(s)	204, 410, 604, 639, 770, 776
DpnI	GATC	3 cut(s)	189, 222, 415
DpnII	GATC	3 cut(s)	187, 220, 413
Eco130I	CCWWGG	3 cut(s)	255, 440, 684
Eco147I	AGGCCT	2 cut(s)	209, 730
Eco47I	GGWCC	3 cut(s)	448, 613, 817
Eco81I	CCTNAGG	2 cut(s)	204, 770
EcoT14I	CCWWGG	3 cut(s)	255, 440, 684
ErhI	CCWWGG	3 cut(s)	255, 440, 684
FaeI	CATG	4 cut(s)	259, 517, 688, 701
FaiI	YATR	7 cut(s)	257, 435, 476, 515, 674, 686, 699
FaqI	GGGAC	2 cut(s)	152, 461
FatI	CATG	4 cut(s)	255, 513, 684, 697
FbaI	TGATCA	1 cut(s)	220
Fnu4HI	GCNGC	9 cut(s)	269, 316, 500, 663, 666, 853, 882, 885, 921
FokI	GGATG	2 cut(s)	361, 884
Fsp4HI	GCNGC	9 cut(s)	269, 316, 500, 663, 666, 853, 882, 885, 921
FspBI	CTAG	3 cut(s)	275, 494, 732
GlaI	GCGC	3 cut(s)	293, 371, 380
GluI	GCNGC	9 cut(s)	269, 316, 500, 663, 666, 853, 882, 885, 921
GsaI	CCCAGC	1 cut(s)	612
HaeIII	GGCC	2 cut(s)	209, 730
HgaI	GACGC	2 cut(s)	290, 361
HhaI	GCGC	3 cut(s)	294, 372, 381
Hin1I	GRCGYC	1 cut(s)	301
Hin1II	CATG	4 cut(s)	259, 517, 688, 701
Hin6I	GCGC	3 cut(s)	292, 370, 379
HinP1I	GCGC	3 cut(s)	292, 370, 379
HinfI	GANTC	2 cut(s)	626, 637
HphI	GGTGA	4 cut(s)	192, 553, 779, 790
Hpy166II	GTNNAC	2 cut(s)	22, 691
Hpy188I	TCNGA	1 cut(s)	413
Hpy188III	TCNNGA	2 cut(s)	237, 914
Hpy8I	GTNNAC	2 cut(s)	22, 691
Hpy99I	CGWCG	1 cut(s)	306
HpyAV	CCTTC	4 cut(s)	168, 481, 574, 842
HpyCH4III	ACNGT	4 cut(s)	146, 217, 717, 868
HpyCH4V	TGCA	4 cut(s)	54, 169, 213, 587
HpyF10VI	GCNNNNNNNGC	7 cut(s)	51, 260, 298, 376, 378, 499, 736
HpyF3I	CTNAG	6 cut(s)	204, 410, 604, 639, 770, 776
Hsp92I	GRCGYC	1 cut(s)	301
Hsp92II	CATG	4 cut(s)	259, 517, 688, 701
HspAI	GCGC	3 cut(s)	292, 370, 379
Ksp22I	TGATCA	1 cut(s)	220
Kzo9I	GATC	3 cut(s)	187, 220, 413
LmnI	GCTCC	5 cut(s)	367, 442, 490, 531, 906
LpnPI	CCDG	9 cut(s)	128, 216, 222, 223, 356, 361, 594, 668, 741
Lsp1109I	GCAGC	8 cut(s)	327, 511, 674, 677, 839, 893, 896, 907
LweI	GCATC	2 cut(s)	411, 464
MaeI	CTAG	3 cut(s)	275, 494, 732
MaeIII	GTNAC	4 cut(s)	95, 644, 679, 796
MalI	GATC	3 cut(s)	189, 222, 415
MboI	GATC	3 cut(s)	187, 220, 413
MboII	GAAGA	4 cut(s)	550, 757, 776, 857
MfeI	CAATTG	1 cut(s)	459
MflI	RGATCY	1 cut(s)	187
MluCI	AATT	4 cut(s)	333, 459, 572, 909
MlyI	GAGTC	2 cut(s)	631, 635
MnlI	CCTC	8 cut(s)	199, 208, 257, 322, 339, 419, 522, 830
MseI	TTAA	6 cut(s)	72, 708, 792, 837, 860, 891
MslI	CAYNNNNRTG	3 cut(s)	362, 677, 792
MspA1I	CMGCKG	3 cut(s)	608, 806, 887
MspCI	CTTAAG	1 cut(s)	707
MunI	CAATTG	1 cut(s)	459
MwoI	GCNNNNNNNGC	7 cut(s)	51, 260, 298, 376, 378, 499, 736
NcoI	CCATGG	2 cut(s)	255, 684
NdeII	GATC	3 cut(s)	187, 220, 413
NlaIII	CATG	4 cut(s)	259, 517, 688, 701
NlaIV	GGNNCC	4 cut(s)	189, 449, 472, 614
NmuCI	GTSAC	3 cut(s)	95, 679, 796
PceI	AGGCCT	2 cut(s)	209, 730
PkrI	GCNGC	9 cut(s)	270, 317, 501, 664, 667, 854, 883, 886, 922
PleI	GAGTC	2 cut(s)	631, 634
PpsI	GAGTC	2 cut(s)	631, 634
PspFI	CCCAGC	1 cut(s)	608
PspN4I	GGNNCC	4 cut(s)	189, 449, 472, 614
PspPI	GGNCC	3 cut(s)	448, 613, 817
PstNI	CAGNNNCTG	1 cut(s)	887
PsuI	RGATCY	1 cut(s)	187
PvuII	CAGCTG	3 cut(s)	608, 806, 887
RsaI	GTAC	3 cut(s)	35, 307, 398
RsaNI	GTAC	3 cut(s)	34, 306, 397
RseI	CAYNNNNRTG	3 cut(s)	362, 677, 792
SaqAI	TTAA	6 cut(s)	72, 708, 792, 837, 860, 891
SatI	GCNGC	9 cut(s)	269, 316, 500, 663, 666, 853, 882, 885, 921
Sau3AI	GATC	3 cut(s)	187, 220, 413
Sau96I	GGNCC	3 cut(s)	448, 613, 817
SchI	GAGTC	2 cut(s)	631, 635
SfaNI	GCATC	2 cut(s)	411, 464
SinI	GGWCC	3 cut(s)	448, 613, 817
SmiMI	CAYNNNNRTG	3 cut(s)	362, 677, 792
SmlI	CTYRAG	1 cut(s)	707
SmoI	CTYRAG	1 cut(s)	707
Sse9I	AATT	4 cut(s)	333, 459, 572, 909
SseBI	AGGCCT	2 cut(s)	209, 730
SsiI	CCGC	3 cut(s)	266, 269, 904
SspI	AATATT	1 cut(s)	134
SspMI	CTAG	3 cut(s)	275, 494, 732
StuI	AGGCCT	2 cut(s)	209, 730
StyI	CCWWGG	3 cut(s)	255, 440, 684
TaaI	ACNGT	4 cut(s)	146, 217, 717, 868
TaqI	TCGA	1 cut(s)	629
TasI	AATT	4 cut(s)	333, 459, 572, 909
TauI	GCSGC	1 cut(s)	271
Tru1I	TTAA	6 cut(s)	72, 708, 792, 837, 860, 891
Tru9I	TTAA	6 cut(s)	72, 708, 792, 837, 860, 891
TscAI	CASTG	5 cut(s)	100, 647, 662, 784, 873
TseFI	GTSAC	3 cut(s)	95, 679, 796
TseI	GCWGC	8 cut(s)	315, 499, 662, 665, 852, 881, 884, 920
Tsp45I	GTSAC	3 cut(s)	95, 679, 796
TspDTI	ATGAA	7 cut(s)	91, 138, 144, 404, 530, 825, 888
TspRI	CASTG	5 cut(s)	100, 647, 662, 784, 873
Vha464I	CTTAAG	1 cut(s)	707
VpaK11BI	GGWCC	3 cut(s)	448, 613, 817
XspI	CTAG	3 cut(s)	275, 494, 732

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.