Rh3DG058600

transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3D
OG0002598
Physical Location & Seq
Reverse (-)
3957856 .. 3960170
2315 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3DG058600.1

Sequence Viewer

Length: 921 bp
ATGGCGCTAGACGCCGTCGTTTTCCCTCAAGATCCTTTTACTTACACTACTAACAAAGACCTCTACAACTTGTTAGCAGGGAATTGGAGCTGTGATGATCATCAGCAGCAGCATCTGCTGCAAGAAGCCTCTTTTGATTTTCTCGGCAACCAAACAGATCACCATTTCACGACTTACTGCTCACCTCCTTCAATCGTTCCGCATTTCGACGATTTGCAGCTCTCCAATCCAAACCCAGATGGTTCAACCGACTTTGATCAAGCTCAGTTACAACTTCCATTAGTGGAGGATACTGGTCCGACGACCACCATTCGTCCGAAACGGCGGCGTGCCAAGAGCAAAAAGAACAAGGAGGAGATTGAGAACCAGAGAATGACGCACATTGCTGTTGAGCGCAACAGAAGAAAACAAATGAATGAGTATCTCTCTGCCCTTCGATCTATAATGCCCGATTCATATGTCCAGAGGGGTGACCAAGCATCAATCATTGGGGGTGCTATTAACTTTGTGAAGGAGCTAGAGCAACAAGTGCAATTCCTCGGTGCTCAAAAGCCAAACAATAACAATTCGGATTTGCCTTTCTCAGACTTCTTTAGCTTTCCACAATACTCATCATCAACAACTGGTACCAGTACTAGTACTGCTCATCAGACTAGTCATGAAAATCGATACGATTCTGATCAGAGGCCGTCGGTTGAGCACAAGTACGCGGCGGACATGAATGTGAGGGTTGCAGCAGACATTGAGGTGACTATGGTGGAGAGCCATGCAAACCTCAAGGTCAGATCCAAAAGGGTTCCGAAGCAGCTCTTGAAGTTTGTTTCTGGGTTGCACACACTGCGCCTGACCATTCTTCACCTCAATGTTGCCACTGTTGACGAAATTGTCCTCTATTCTCTAAGTGTCAAGGTAATTAATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
HLH

Protein Analysis

306

Amino Acids

34.71

Weight (kDa)

6.17

Isoelectric Point (pI)

49.52

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
HLH PF00010 123 - 174 2.1e-12 Helix-loop-helix DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 884
Acc65I GGTACC 1 cut(s) 626
AccB1I GGYRCC 1 cut(s) 626
AccII CGCG 1 cut(s) 710
AciI CCGC 4 cut(s) 200, 325, 710, 713
AclWI GGATC 2 cut(s) 26, 780
AcyI GRCGYC 1 cut(s) 12
AfaI GTAC 4 cut(s) 628, 634, 640, 707
AgsI TTSAA 3 cut(s) 192, 246, 814
AhlI ACTAGT 2 cut(s) 635, 653
AluBI AGCT 6 cut(s) 90, 220, 263, 517, 597, 808
AluI AGCT 6 cut(s) 90, 220, 263, 517, 597, 808
Alw21I GWGCWC 2 cut(s) 547, 702
AlwI GGATC 2 cut(s) 26, 780
AlwNI CAGNNNCTG 1 cut(s) 115
AoxI GGCC 1 cut(s) 686
ApeKI GCWGC 6 cut(s) 106, 109, 118, 217, 734, 805
AseI ATTAAT 1 cut(s) 915
Asp718I GGTACC 1 cut(s) 626
AspLEI GCGC 3 cut(s) 7, 396, 843
AspS9I GGNCC 1 cut(s) 296
AsuHPI GGTGA 5 cut(s) 152, 174, 482, 760, 848
AvaII GGWCC 1 cut(s) 296
BanI GGYRCC 1 cut(s) 626
Bbv12I GWGCWC 2 cut(s) 547, 702
BbvI GCAGC 6 cut(s) 105, 118, 121, 229, 746, 817
BccI CCATC 1 cut(s) 233
BceAI ACGGC 2 cut(s) 338, 673
BciVI GTATCC 1 cut(s) 283
BclI TGATCA 3 cut(s) 97, 256, 679
BcuI ACTAGT 2 cut(s) 635, 653
BfaI CTAG 4 cut(s) 8, 518, 636, 654
BfoI RGCGCY 1 cut(s) 8
BfuI GTATCC 1 cut(s) 283
BisI GCNGC 8 cut(s) 107, 110, 119, 218, 326, 711, 735, 806
BlsI GCNGC 8 cut(s) 108, 111, 120, 219, 327, 712, 736, 807
BmcAI AGTACT 2 cut(s) 634, 640
Bme18I GGWCC 1 cut(s) 296
BmgT120I GGNCC 1 cut(s) 296
BmiI GGNNCC 2 cut(s) 628, 798
BmsI GCATC 2 cut(s) 121, 488
BplI GAGNNNNNCTC 2 cut(s) 410, 442
BpuEI CTTGAG 2 cut(s) 12, 761
Bsa29I ATCGAT 1 cut(s) 667
BsaBI GATNNNNATC 2 cut(s) 99, 678
BsaHI GRCGYC 1 cut(s) 12
BsaJI CCNNGG 1 cut(s) 538
Bse1I ACTGG 3 cut(s) 298, 628, 630
Bse3DI GCAATG 1 cut(s) 381
Bse8I GATNNNNATC 2 cut(s) 99, 678
BseCI ATCGAT 1 cut(s) 667
BseDI CCNNGG 1 cut(s) 538
BseJI GATNNNNATC 2 cut(s) 99, 678
BseMI GCAATG 1 cut(s) 381
BseMII CTCAG 2 cut(s) 278, 597
BseNI ACTGG 3 cut(s) 298, 628, 630
BseRI GAGGAG 1 cut(s) 368
BseXI GCAGC 6 cut(s) 105, 118, 121, 229, 746, 817
Bsh1236I CGCG 1 cut(s) 710
BshFI GGCC 1 cut(s) 688
BshNI GGYRCC 1 cut(s) 626
BshVI ATCGAT 1 cut(s) 667
BsiHKAI GWGCWC 2 cut(s) 547, 702
BsnI GGCC 1 cut(s) 688
Bsp1286I GDGCHC 2 cut(s) 547, 702
Bsp143I GATC 7 cut(s) 31, 97, 157, 256, 437, 679, 785
BspACI CCGC 4 cut(s) 200, 325, 710, 713
BspANI GGCC 1 cut(s) 688
BspCNI CTCAG 2 cut(s) 277, 596
BspDI ATCGAT 1 cut(s) 667
BspFNI CGCG 1 cut(s) 710
BspHI TCATGA 1 cut(s) 658
BspLI GGNNCC 2 cut(s) 628, 798
BspPI GGATC 2 cut(s) 26, 780
BspT107I GGYRCC 1 cut(s) 626
BsrDI GCAATG 1 cut(s) 381
BsrI ACTGG 3 cut(s) 298, 628, 630
BssECI CCNNGG 1 cut(s) 538
BssMI GATC 7 cut(s) 31, 97, 157, 256, 437, 679, 785
BssNI GRCGYC 1 cut(s) 12
Bst4CI ACNGT 1 cut(s) 874
BstACI GRCGYC 1 cut(s) 12
BstAPI GCANNNNNTGC 4 cut(s) 115, 118, 529, 838
BstC8I GCNNGC 1 cut(s) 330
BstDEI CTNAG 3 cut(s) 264, 583, 899
BstEII GGTNACC 1 cut(s) 470
BstFNI CGCG 1 cut(s) 710
BstH2I RGCGCY 1 cut(s) 8
BstHHI GCGC 3 cut(s) 7, 396, 843
BstKTI GATC 7 cut(s) 34, 100, 160, 259, 440, 682, 788
BstMBI GATC 7 cut(s) 31, 97, 157, 256, 437, 679, 785
BstMWI GCNNNNNNNGC 5 cut(s) 11, 115, 118, 529, 838
BstPI GGTNACC 1 cut(s) 470
BstUI CGCG 1 cut(s) 710
BstV1I GCAGC 6 cut(s) 105, 118, 121, 229, 746, 817
BstX2I RGATCY 2 cut(s) 31, 785
BstYI RGATCY 2 cut(s) 31, 785
Bsu15I ATCGAT 1 cut(s) 667
BsuI GTATCC 1 cut(s) 283
BsuRI GGCC 1 cut(s) 688
BsuTUI ATCGAT 1 cut(s) 667
BtsI GCAGTG 1 cut(s) 836
BtsIMutI CAGTG 2 cut(s) 836, 870
Cac8I GCNNGC 1 cut(s) 330
CaiI CAGNNNCTG 1 cut(s) 115
CciI TCATGA 1 cut(s) 658
CfoI GCGC 3 cut(s) 7, 396, 843
Cfr13I GGNCC 1 cut(s) 296
ClaI ATCGAT 1 cut(s) 667
CseI GACGC 2 cut(s) 20, 385
Csp6I GTAC 4 cut(s) 627, 633, 639, 706
CviAII CATG 3 cut(s) 659, 718, 767
CviQI GTAC 4 cut(s) 627, 633, 639, 706
DdeI CTNAG 3 cut(s) 264, 583, 899
DpnI GATC 7 cut(s) 33, 99, 159, 258, 439, 681, 787
DpnII GATC 7 cut(s) 31, 97, 157, 256, 437, 679, 785
DrdI GACNNNNNNGTC 1 cut(s) 884
DseDI GACNNNNNNGTC 1 cut(s) 884
EciI GGCGGA 1 cut(s) 728
Eco47I GGWCC 1 cut(s) 296
Eco91I GGTNACC 1 cut(s) 470
EcoO65I GGTNACC 1 cut(s) 470
FaeI CATG 3 cut(s) 662, 721, 770
FaiI YATR 7 cut(s) 443, 457, 459, 660, 719, 755, 768
FalI AAGNNNNNCTT 2 cut(s) 794, 826
FatI CATG 3 cut(s) 658, 717, 766
FauNDI CATATG 1 cut(s) 457
FbaI TGATCA 3 cut(s) 97, 256, 679
Fnu4HI GCNGC 8 cut(s) 107, 110, 119, 218, 326, 711, 735, 806
Fsp4HI GCNGC 8 cut(s) 107, 110, 119, 218, 326, 711, 735, 806
FspBI CTAG 4 cut(s) 8, 518, 636, 654
GlaI GCGC 3 cut(s) 6, 395, 842
GluI GCNGC 8 cut(s) 107, 110, 119, 218, 326, 711, 735, 806
HaeII RGCGCY 1 cut(s) 8
HaeIII GGCC 1 cut(s) 688
HgaI GACGC 2 cut(s) 20, 385
HhaI GCGC 3 cut(s) 7, 396, 843
Hin1I GRCGYC 1 cut(s) 12
Hin1II CATG 3 cut(s) 662, 721, 770
Hin6I GCGC 3 cut(s) 5, 394, 841
HinP1I GCGC 3 cut(s) 5, 394, 841
HincII GTYRAC 1 cut(s) 877
HindII GTYRAC 1 cut(s) 877
HinfI GANTC 2 cut(s) 452, 674
HphI GGTGA 5 cut(s) 152, 174, 482, 760, 848
Hpy166II GTNNAC 1 cut(s) 877
Hpy188I TCNGA 9 cut(s) 300, 318, 571, 586, 651, 679, 684, 785, 801
Hpy188III TCNNGA 5 cut(s) 29, 169, 463, 659, 811
Hpy8I GTNNAC 1 cut(s) 877
Hpy99I CGWCG 4 cut(s) 20, 212, 304, 694
HpyAV CCTTC 3 cut(s) 198, 443, 505
HpyCH4III ACNGT 1 cut(s) 874
HpyCH4V TGCA 6 cut(s) 121, 217, 532, 734, 770, 832
HpyF10VI GCNNNNNNNGC 5 cut(s) 11, 115, 118, 529, 838
HpyF3I CTNAG 3 cut(s) 264, 583, 899
Hsp92I GRCGYC 1 cut(s) 12
Hsp92II CATG 3 cut(s) 662, 721, 770
HspAI GCGC 3 cut(s) 5, 394, 841
KpnI GGTACC 1 cut(s) 630
Ksp22I TGATCA 3 cut(s) 97, 256, 679
Kzo9I GATC 7 cut(s) 31, 97, 157, 256, 437, 679, 785
LmnI GCTCC 2 cut(s) 87, 514
LpnPI CCDG 9 cut(s) 63, 249, 279, 380, 476, 609, 643, 810, 857
Lsp1109I GCAGC 6 cut(s) 105, 118, 121, 229, 746, 817
LweI GCATC 2 cut(s) 121, 488
MaeI CTAG 4 cut(s) 8, 518, 636, 654
MaeIII GTNAC 3 cut(s) 267, 470, 748
MalI GATC 7 cut(s) 33, 99, 159, 258, 439, 681, 787
MboI GATC 7 cut(s) 31, 97, 157, 256, 437, 679, 785
MboII GAAGA 2 cut(s) 414, 845
MflI RGATCY 2 cut(s) 31, 785
MhlI GDGCHC 2 cut(s) 547, 702
MluCI AATT 6 cut(s) 82, 533, 565, 882, 912, 916
MmeI TCCRAC 1 cut(s) 323
MseI TTAA 2 cut(s) 501, 915
MslI CAYNNNNRTG 3 cut(s) 722, 746, 861
MvnI CGCG 1 cut(s) 710
MwoI GCNNNNNNNGC 5 cut(s) 11, 115, 118, 529, 838
NdeI CATATG 1 cut(s) 457
NdeII GATC 7 cut(s) 31, 97, 157, 256, 437, 679, 785
NlaIII CATG 3 cut(s) 662, 721, 770
NlaIV GGNNCC 2 cut(s) 628, 798
NmeAIII GCCGAG 1 cut(s) 123
NmuCI GTSAC 2 cut(s) 470, 748
PagI TCATGA 1 cut(s) 658
PfeI GAWTC 2 cut(s) 452, 674
PflFI GACNNNGTC 1 cut(s) 14
PkrI GCNGC 8 cut(s) 108, 111, 120, 219, 327, 712, 736, 807
PshBI ATTAAT 1 cut(s) 915
PspEI GGTNACC 1 cut(s) 470
PspN4I GGNNCC 2 cut(s) 628, 798
PspPI GGNCC 1 cut(s) 296
PstNI CAGNNNCTG 1 cut(s) 115
PsuI RGATCY 2 cut(s) 31, 785
PsyI GACNNNGTC 1 cut(s) 14
RsaI GTAC 4 cut(s) 628, 634, 640, 707
RsaNI GTAC 4 cut(s) 627, 633, 639, 706
RseI CAYNNNNRTG 3 cut(s) 722, 746, 861
SaqAI TTAA 2 cut(s) 501, 915
SatI GCNGC 8 cut(s) 107, 110, 119, 218, 326, 711, 735, 806
Sau3AI GATC 7 cut(s) 31, 97, 157, 256, 437, 679, 785
Sau96I GGNCC 1 cut(s) 296
ScaI AGTACT 2 cut(s) 634, 640
SduI GDGCHC 2 cut(s) 547, 702
SfaNI GCATC 2 cut(s) 121, 488
SinI GGWCC 1 cut(s) 296
SmiMI CAYNNNNRTG 3 cut(s) 722, 746, 861
SmlI CTYRAG 2 cut(s) 27, 776
SmoI CTYRAG 2 cut(s) 27, 776
SpeI ACTAGT 2 cut(s) 635, 653
Sse9I AATT 6 cut(s) 82, 533, 565, 882, 912, 916
SsiI CCGC 4 cut(s) 200, 325, 710, 713
SspMI CTAG 4 cut(s) 8, 518, 636, 654
TaaI ACNGT 1 cut(s) 874
TaqI TCGA 3 cut(s) 207, 436, 667
TasI AATT 6 cut(s) 82, 533, 565, 882, 912, 916
TatI WGTACW 2 cut(s) 632, 638
TauI GCSGC 2 cut(s) 328, 713
TfiI GAWTC 2 cut(s) 452, 674
Tru1I TTAA 2 cut(s) 501, 915
Tru9I TTAA 2 cut(s) 501, 915
TscAI CASTG 2 cut(s) 843, 877
TseFI GTSAC 2 cut(s) 470, 748
TseI GCWGC 6 cut(s) 106, 109, 118, 217, 734, 805
Tsp45I GTSAC 2 cut(s) 470, 748
TspDTI ATGAA 4 cut(s) 428, 444, 675, 734
TspRI CASTG 2 cut(s) 843, 877
Tth111I GACNNNGTC 1 cut(s) 14
VpaK11BI GGWCC 1 cut(s) 296
VspI ATTAAT 1 cut(s) 915
XspI CTAG 4 cut(s) 8, 518, 636, 654
ZrmI AGTACT 2 cut(s) 634, 640
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.