Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0002598

Physical Location & Seq

Genomic Coordinates Reverse (-)

42988157 .. 42990414

Gene Structure 2258 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G524500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 975 bp

ATGGCATTAGAAGCTGTGGTTTATCCAAAAGAGTATCCATTTGGCTTTGGTTGCAAAGATTTCTACTCTTTCAATGGAGGAGGAGCTTCTTGGGGATGTGACTTTATCTCACAAGAGGGTCAAAACAACCACATAGAGCAACATGTTCTCAATGAAAATTGGGACTATTGCTCCTCATCTCCTTCACTTTTGCAAAATGTGAAAGAATGGGATCCCAATTCCTCACCTGAGGCCTGCACAGCTGACCAATCTGTCCCTCCAGGACATCTCTCTGCCATGGAAACACCACCACCGCCACCACCACCACCACCACCAACAACGACAAACCGGCGCAAACGACGTCGTACCAGAAGTAGCAAGAACAAGGAGGAAATTGAGAACCAGAGGATGACTCACATTGTTGTGGAGCGAAACAGGCGCAAGCAAATGAATGAGTACCTTGCTGTCCTCAGATCATTGATGCCACAGTCTTATGCTCAAAGGGGTGACCAAGCATCAATTATTGGGGGTGCCATTAATTTTGTGAAGGAGCTAGAGCAGCTTTTGCAGTCAATGGACAGCAACAAAAGGAGCAAGCAACAACCTTTGGCTGAGTTCTTCACCTTCCCACAATTCTCAACTCGTGCAACTCAGAGCAACAACAACTCAGCTGGGGTCCAAGCAAACGAGCCAAACATGGCTCAGAGCAACAGCAACCAGTGGGCAGCAGCAGACATAGAAGTGACCATGGTGGATAGCCATGCCAACCTTAAGATACTCTCCAAGAAAAGGCCTAGGCAGCTGTTGAAGATGGTGGCTGGGTTTCAAAGTCTCAGGCTCAGTGTTCTTCACCTGAATGTGACCACAGTTGATGAAATGGTCCTCTACTCTGTTAGTGTCAAGATTGAAGAAGGGTGCTTGCTTAATACAGTGGATGAAATAGCAGCAGCTGTTAATCAAATGCTGCGCAGAATTGAAGAAGGTGGTTTTAGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HLH

Protein Analysis

325

Amino Acids

36.33

Weight (kDa)

6.62

Isoelectric Point (pI)

77.97

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002598)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G22490 AT1G22490 AT1G72210 AT1G72210
fragaria_vesca	FvH4_5g36240 FvH4_5g36240 FvH4_6g05440 FvH4_6g05440
malus_domestica	MD04G1208700.v1.1 MD08G1190500.v1.1 MD12G1223000.v1.1 MD15G1377800.v1.1
prunus_persica	Prupe.1G524500_v2.0.a1 Prupe.1G524500_v2.0.a1 Prupe.6G329600_v2.0.a1 Prupe.6G329600_v2.0.a1
pyrus_communis	pycom04g18480 pycom08g16370 pycom12g20890 pycom15g33850
rosa_chinensis	RchiOBHm_Chr3g0454211 RchiOBHm_Chr7g0238141
rosa_laevigata	RLG00000000939 RLG00000025476
rosa_multiflora	Rmu_sc0007628.1_g000004
rosa_roxburghii	Rroxscaffold_165G00436990 Rroxscaffold_3G00223340 Rroxscaffold_6G00425370
rosa_rugosa	Rorug02G0653500 Rorug07G0310500
rosa_samantha	Rh3AG056600 Rh3BG058100 Rh3CG057300 Rh3DG058600 Rh7AG466000 Rh7BG436700 Rh7CG484000 Rh7DG452400
rosa_wichuraiana	Rw3G004360 Rw7G038590

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	251
AatII	GACGTC	1 cut(s)	343
Acc16I	TGCGCA	1 cut(s)	947
AccB1I	GGYRCC	1 cut(s)	509
AciI	CCGC	1 cut(s)	293
AclWI	GGATC	2 cut(s)	206, 219
AcyI	GRCGYC	1 cut(s)	340
AfaI	GTAC	2 cut(s)	346, 437
AfiI	CCNNNNNNNGG	1 cut(s)	768
AflII	CTTAAG	1 cut(s)	749
AflIII	ACRYGT	1 cut(s)	142
AgsI	TTSAA	5 cut(s)	73, 787, 806, 887, 956
AjnI	CCWGG	1 cut(s)	259
AluBI	AGCT	9 cut(s)	14, 86, 242, 532, 541, 650, 781, 929, 972
AluI	AGCT	9 cut(s)	14, 86, 242, 532, 541, 650, 781, 929, 972
Alw26I	GTCTC	1 cut(s)	815
AlwI	GGATC	2 cut(s)	206, 219
AlwNI	CAGNNNCTG	1 cut(s)	929
AoxI	GGCC	2 cut(s)	231, 770
ApeKI	GCWGC	7 cut(s)	538, 704, 707, 778, 923, 926, 943
AseI	ATTAAT	1 cut(s)	516
AspA2I	CCTAGG	1 cut(s)	773
AspLEI	GCGC	3 cut(s)	333, 420, 948
AspS9I	GGNCC	2 cut(s)	655, 859
AsuHPI	GGTGA	4 cut(s)	216, 497, 592, 821
AvaII	GGWCC	2 cut(s)	655, 859
AvrII	CCTAGG	1 cut(s)	773
AxyI	CCTNAGG	1 cut(s)	228
BamHI	GGATCC	1 cut(s)	211
BanI	GGYRCC	1 cut(s)	509
BauI	CACGAG	1 cut(s)	621
BbvI	GCAGC	7 cut(s)	550, 716, 719, 790, 930, 935, 938
BccI	CCATC	1 cut(s)	784
BciT130I	CCWGG	1 cut(s)	261
BciVI	GTATCC	1 cut(s)	45
BcoDI	GTCTC	1 cut(s)	815
BfaI	CTAG	2 cut(s)	533, 774
BfrI	CTTAAG	1 cut(s)	749
BfuI	GTATCC	1 cut(s)	45
BisI	GCNGC	7 cut(s)	539, 705, 708, 779, 924, 927, 944
BlnI	CCTAGG	1 cut(s)	773
BlsI	GCNGC	7 cut(s)	540, 706, 709, 780, 925, 928, 945
Bme1390I	CCNGG	1 cut(s)	261
Bme18I	GGWCC	2 cut(s)	655, 859
BmgT120I	GGNCC	2 cut(s)	655, 859
BmiI	GGNNCC	3 cut(s)	213, 511, 656
BmrFI	CCNGG	1 cut(s)	261
BmsI	GCATC	2 cut(s)	450, 503
BplI	GAGNNNNNCTC	2 cut(s)	376, 408
BpmI	CTGGAG	1 cut(s)	243
BsaHI	GRCGYC	1 cut(s)	340
BsaJI	CCNNGG	3 cut(s)	276, 726, 773
BsaXI	ACNNNNNCTCC	2 cut(s)	155, 185
Bsc4I	CCNNNNNNNGG	1 cut(s)	768
Bse118I	RCCGGY	1 cut(s)	327
Bse1I	ACTGG	1 cut(s)	697
Bse21I	CCTNAGG	1 cut(s)	228
BseBI	CCWGG	1 cut(s)	261
BseDI	CCNNGG	3 cut(s)	276, 726, 773
BseGI	GGATG	3 cut(s)	101, 393, 919
BseLI	CCNNNNNNNGG	1 cut(s)	768
BseMII	CTCAG	8 cut(s)	219, 463, 582, 644, 660, 695, 826, 832
BseNI	ACTGG	1 cut(s)	697
BseRI	GAGGAG	3 cut(s)	93, 96, 163
BseXI	GCAGC	7 cut(s)	550, 716, 719, 790, 930, 935, 938
BseYI	CCCAGC	2 cut(s)	650, 797
BsgI	GTGCAG	1 cut(s)	220
BshFI	GGCC	2 cut(s)	233, 772
BshNI	GGYRCC	1 cut(s)	509
BsiSI	CCGG	1 cut(s)	328
BslFI	GGGAC	2 cut(s)	176, 239
BslI	CCNNNNNNNGG	1 cut(s)	768
BsmAI	GTCTC	1 cut(s)	815
BsmFI	GGGAC	2 cut(s)	176, 239
BsnI	GGCC	2 cut(s)	233, 772
Bsp143I	GATC	2 cut(s)	211, 452
Bsp19I	CCATGG	2 cut(s)	276, 726
BspACI	CCGC	1 cut(s)	293
BspANI	GGCC	2 cut(s)	233, 772
BspCNI	CTCAG	8 cut(s)	220, 462, 583, 643, 659, 694, 825, 831
BspLI	GGNNCC	3 cut(s)	213, 511, 656
BspPI	GGATC	2 cut(s)	206, 219
BspT107I	GGYRCC	1 cut(s)	509
BspTI	CTTAAG	1 cut(s)	749
BsrFI	RCCGGY	1 cut(s)	327
BsrI	ACTGG	1 cut(s)	697
BssAI	RCCGGY	1 cut(s)	327
BssECI	CCNNGG	3 cut(s)	276, 726, 773
BssMI	GATC	2 cut(s)	211, 452
BssNI	GRCGYC	1 cut(s)	340
BssSI	CACGAG	1 cut(s)	621
BssT1I	CCWWGG	3 cut(s)	276, 726, 773
Bst2BI	CACGAG	1 cut(s)	621
Bst2UI	CCWGG	1 cut(s)	261
Bst4CI	ACNGT	3 cut(s)	468, 847, 910
BstACI	GRCGYC	1 cut(s)	340
BstAFI	CTTAAG	1 cut(s)	749
BstAPI	GCANNNNNTGC	1 cut(s)	544
BstC8I	GCNNGC	4 cut(s)	235, 422, 575, 899
BstDEI	CTNAG	8 cut(s)	228, 449, 591, 630, 646, 681, 812, 818
BstDSI	CCRYGG	2 cut(s)	276, 726
BstEII	GGTNACC	1 cut(s)	485
BstF5I	GGATG	3 cut(s)	101, 393, 919
BstHHI	GCGC	3 cut(s)	333, 420, 948
BstKTI	GATC	2 cut(s)	214, 455
BstMAI	GTCTC	1 cut(s)	815
BstMBI	GATC	2 cut(s)	211, 452
BstMWI	GCNNNNNNNGC	7 cut(s)	11, 51, 239, 415, 538, 544, 778
BstNI	CCWGG	1 cut(s)	261
BstNSI	RCATGY	1 cut(s)	146
BstPI	GGTNACC	1 cut(s)	485
BstSCI	CCNGG	1 cut(s)	259
BstV1I	GCAGC	7 cut(s)	550, 716, 719, 790, 930, 935, 938
BstX2I	RGATCY	1 cut(s)	211
BstYI	RGATCY	1 cut(s)	211
Bsu36I	CCTNAGG	1 cut(s)	228
BsuI	GTATCC	1 cut(s)	45
BsuRI	GGCC	2 cut(s)	233, 772
BtgI	CCRYGG	2 cut(s)	276, 726
BtsCI	GGATG	3 cut(s)	101, 393, 919
BtsIMutI	CAGTG	3 cut(s)	704, 826, 915
Cac8I	GCNNGC	4 cut(s)	235, 422, 575, 899
CaiI	CAGNNNCTG	1 cut(s)	929
CfoI	GCGC	3 cut(s)	333, 420, 948
Cfr10I	RCCGGY	1 cut(s)	327
Cfr13I	GGNCC	2 cut(s)	655, 859
Csp6I	GTAC	2 cut(s)	345, 436
CviAII	CATG	5 cut(s)	143, 277, 676, 727, 740
CviQI	GTAC	2 cut(s)	345, 436
DdeI	CTNAG	8 cut(s)	228, 449, 591, 630, 646, 681, 812, 818
DpnI	GATC	2 cut(s)	213, 454
DpnII	GATC	2 cut(s)	211, 452
DrdI	GACNNNNNNGTC	1 cut(s)	251
DseDI	GACNNNNNNGTC	1 cut(s)	251
Eco130I	CCWWGG	3 cut(s)	276, 726, 773
Eco147I	AGGCCT	2 cut(s)	233, 772
Eco47I	GGWCC	2 cut(s)	655, 859
Eco81I	CCTNAGG	1 cut(s)	228
Eco91I	GGTNACC	1 cut(s)	485
EcoO65I	GGTNACC	1 cut(s)	485
EcoRII	CCWGG	1 cut(s)	259
EcoT14I	CCWWGG	3 cut(s)	276, 726, 773
ErhI	CCWWGG	3 cut(s)	276, 726, 773
FaeI	CATG	5 cut(s)	146, 280, 679, 730, 743
FaiI	YATR	8 cut(s)	134, 144, 278, 474, 677, 716, 728, 741
FaqI	GGGAC	2 cut(s)	176, 239
FatI	CATG	5 cut(s)	142, 276, 675, 726, 739
Fnu4HI	GCNGC	7 cut(s)	539, 705, 708, 779, 924, 927, 944
FokI	GGATG	3 cut(s)	108, 400, 926
Fsp4HI	GCNGC	7 cut(s)	539, 705, 708, 779, 924, 927, 944
FspBI	CTAG	2 cut(s)	533, 774
FspI	TGCGCA	1 cut(s)	947
GlaI	GCGC	3 cut(s)	332, 419, 947
GluI	GCNGC	7 cut(s)	539, 705, 708, 779, 924, 927, 944
GsaI	CCCAGC	2 cut(s)	654, 801
GsuI	CTGGAG	1 cut(s)	243
HaeIII	GGCC	2 cut(s)	233, 772
HapII	CCGG	1 cut(s)	328
HhaI	GCGC	3 cut(s)	333, 420, 948
Hin1I	GRCGYC	1 cut(s)	340
Hin1II	CATG	5 cut(s)	146, 280, 679, 730, 743
Hin6I	GCGC	3 cut(s)	331, 418, 946
HinP1I	GCGC	3 cut(s)	331, 418, 946
HinfI	GANTC	1 cut(s)	391
HpaII	CCGG	1 cut(s)	328
HphI	GGTGA	4 cut(s)	216, 497, 592, 821
Hpy188I	TCNGA	3 cut(s)	452, 633, 684
Hpy188III	TCNNGA	1 cut(s)	880
Hpy99I	CGWCG	2 cut(s)	342, 345
HpyAV	CCTTC	5 cut(s)	192, 520, 613, 884, 953
HpyCH4III	ACNGT	3 cut(s)	468, 847, 910
HpyCH4IV	ACGT	1 cut(s)	340
HpyCH4V	TGCA	5 cut(s)	54, 193, 237, 547, 626
HpyF10VI	GCNNNNNNNGC	7 cut(s)	11, 51, 239, 415, 538, 544, 778
HpyF3I	CTNAG	8 cut(s)	228, 449, 591, 630, 646, 681, 812, 818
HpySE526I	ACGT	1 cut(s)	340
Hsp92I	GRCGYC	1 cut(s)	340
Hsp92II	CATG	5 cut(s)	146, 280, 679, 730, 743
HspAI	GCGC	3 cut(s)	331, 418, 946
Kzo9I	GATC	2 cut(s)	211, 452
LmnI	GCTCC	5 cut(s)	83, 176, 406, 529, 570
Lsp1109I	GCAGC	7 cut(s)	550, 716, 719, 790, 930, 935, 938
LweI	GCATC	2 cut(s)	450, 503
MaeI	CTAG	2 cut(s)	533, 774
MaeII	ACGT	1 cut(s)	340
MaeIII	GTNAC	4 cut(s)	98, 485, 721, 838
MalI	GATC	2 cut(s)	213, 454
MboI	GATC	2 cut(s)	211, 452
MboII	GAAGA	5 cut(s)	589, 799, 818, 899, 968
MflI	RGATCY	1 cut(s)	211
MluCI	AATT	7 cut(s)	157, 217, 372, 498, 517, 611, 951
MlyI	GAGTC	1 cut(s)	385
MseI	TTAA	4 cut(s)	516, 750, 903, 933
MslI	CAYNNNNRTG	3 cut(s)	401, 719, 834
MspA1I	CMGCKG	4 cut(s)	242, 650, 781, 929
MspCI	CTTAAG	1 cut(s)	749
MspI	CCGG	1 cut(s)	328
MspR9I	CCNGG	1 cut(s)	261
MvaI	CCWGG	1 cut(s)	261
MwoI	GCNNNNNNNGC	7 cut(s)	11, 51, 239, 415, 538, 544, 778
NcoI	CCATGG	2 cut(s)	276, 726
NdeII	GATC	2 cut(s)	211, 452
NlaIII	CATG	5 cut(s)	146, 280, 679, 730, 743
NlaIV	GGNNCC	3 cut(s)	213, 511, 656
NmuCI	GTSAC	4 cut(s)	98, 485, 721, 838
NsbI	TGCGCA	1 cut(s)	947
NspI	RCATGY	1 cut(s)	146
PceI	AGGCCT	2 cut(s)	233, 772
PciI	ACATGT	1 cut(s)	142
PfoI	TCCNGGA	1 cut(s)	259
PkrI	GCNGC	7 cut(s)	540, 706, 709, 780, 925, 928, 945
PleI	GAGTC	1 cut(s)	385
PpsI	GAGTC	1 cut(s)	385
PscI	ACATGT	1 cut(s)	142
PshBI	ATTAAT	1 cut(s)	516
Psp6I	CCWGG	1 cut(s)	259
PspEI	GGTNACC	1 cut(s)	485
PspFI	CCCAGC	2 cut(s)	650, 797
PspGI	CCWGG	1 cut(s)	259
PspN4I	GGNNCC	3 cut(s)	213, 511, 656
PspPI	GGNCC	2 cut(s)	655, 859
PstNI	CAGNNNCTG	1 cut(s)	929
PsuI	RGATCY	1 cut(s)	211
PvuII	CAGCTG	4 cut(s)	242, 650, 781, 929
RsaI	GTAC	2 cut(s)	346, 437
RsaNI	GTAC	2 cut(s)	345, 436
RseI	CAYNNNNRTG	3 cut(s)	401, 719, 834
SaqAI	TTAA	4 cut(s)	516, 750, 903, 933
SatI	GCNGC	7 cut(s)	539, 705, 708, 779, 924, 927, 944
Sau3AI	GATC	2 cut(s)	211, 452
Sau96I	GGNCC	2 cut(s)	655, 859
SchI	GAGTC	1 cut(s)	385
ScrFI	CCNGG	1 cut(s)	261
SfaNI	GCATC	2 cut(s)	450, 503
SinI	GGWCC	2 cut(s)	655, 859
SmiMI	CAYNNNNRTG	3 cut(s)	401, 719, 834
SmlI	CTYRAG	1 cut(s)	749
SmoI	CTYRAG	1 cut(s)	749
Sse9I	AATT	7 cut(s)	157, 217, 372, 498, 517, 611, 951
SseBI	AGGCCT	2 cut(s)	233, 772
SsiI	CCGC	1 cut(s)	293
SspMI	CTAG	2 cut(s)	533, 774
StuI	AGGCCT	2 cut(s)	233, 772
StyD4I	CCNGG	1 cut(s)	259
StyI	CCWWGG	3 cut(s)	276, 726, 773
TaaI	ACNGT	3 cut(s)	468, 847, 910
TaiI	ACGT	1 cut(s)	343
TasI	AATT	7 cut(s)	157, 217, 372, 498, 517, 611, 951
Tru1I	TTAA	4 cut(s)	516, 750, 903, 933
Tru9I	TTAA	4 cut(s)	516, 750, 903, 933
TscAI	CASTG	3 cut(s)	704, 826, 915
TseFI	GTSAC	4 cut(s)	98, 485, 721, 838
TseI	GCWGC	7 cut(s)	538, 704, 707, 778, 923, 926, 943
Tsp45I	GTSAC	4 cut(s)	98, 485, 721, 838
TspDTI	ATGAA	4 cut(s)	168, 443, 867, 930
TspRI	CASTG	3 cut(s)	704, 826, 915
Vha464I	CTTAAG	1 cut(s)	749
VpaK11BI	GGWCC	2 cut(s)	655, 859
VspI	ATTAAT	1 cut(s)	516
XceI	RCATGY	1 cut(s)	146
XmaJI	CCTAGG	1 cut(s)	773
XspI	CTAG	2 cut(s)	533, 774
ZraI	GACGTC	1 cut(s)	341

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.