Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0006496

Physical Location & Seq

Genomic Coordinates Forward (+)

8205872 .. 8206243

Gene Structure 372 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G23147.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 273 bp

ATGAGCAATTTGAGAGGAACAAATAGGTTTATACTTGTGGCAGTACTCGTATCATTTGTGTTTTTAAGCATCATGAATGCTGAAGCTCGTAAAGAAATTGGATATCCAAAACAAAGATTTGGTGAAGACCGAACGAATCCGTACGAGGAAATAACACCACCACTAATAGGAGGATGTGATCCTAAAAATCCTCAAACGTGTCTACCAAAACAGCCAGCAAATCCGTACCGACGAGGATGTTTAAAAATTACAAGATGTCAGCGTGATGTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005102 GO:0005179 GO:0005488 GO:0005515 GO:0005575 GO:0005576 GO:0007154 GO:0007165 GO:0007267 GO:0008150 GO:0009966 GO:0009987 GO:0010469 GO:0010646 GO:0019722 GO:0019932 GO:0023051 GO:0023052 GO:0030545 GO:0035556 GO:0048018 GO:0048046 GO:0048583 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0065009 GO:0098772

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RALF

Protein Analysis

90

Amino Acids

10.24

Weight (kDa)

9.5

Isoelectric Point (pI)

45.38

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RALF	PF05498	59 - 88	2.4e-08	Rapid ALkalinization Factor (RALF)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006496)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G23145 AT1G23147 AT1G60625 AT1G60815 AT1G60913 AT1G61563 AT1G61566 AT2G22055 AT2G32835 AT3G04735 AT4G11510
fragaria_vesca	FvH4_6g41850
prunus_persica	Prupe.3G207900_v2.0.a1
rosa_roxburghii	Rroxscaffold_2G00092030 Rroxscaffold_2G00092050 Rroxscaffold_2G00107720 Rroxscaffold_2G00107730
rosa_samantha	Rh2AG386600 Rh2AG386700 Rh2BG541700 Rh2CG373900 Rh2CG374000 Rh2DG409600
rosa_wichuraiana	Rw2G031640 Rw2G043630 Rw2G043650

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	202
AclWI	GGATC	1 cut(s)	173
AcuI	CTGAAG	1 cut(s)	102
AfaI	GTAC	3 cut(s)	45, 143, 227
AfiI	CCNNNNNNNGG	1 cut(s)	167
AflIII	ACRYGT	1 cut(s)	197
AluBI	AGCT	1 cut(s)	86
AluI	AGCT	1 cut(s)	86
AlwI	GGATC	1 cut(s)	173
AsuHPI	GGTGA	1 cut(s)	134
BbsI	GAAGAC	1 cut(s)	132
BmcAI	AGTACT	1 cut(s)	45
BmsI	GCATC	1 cut(s)	78
BpiI	GAAGAC	1 cut(s)	132
Bsc4I	CCNNNNNNNGG	1 cut(s)	167
BseGI	GGATG	2 cut(s)	179, 242
BseLI	CCNNNNNNNGG	1 cut(s)	167
BsiWI	CGTACG	1 cut(s)	141
BslI	CCNNNNNNNGG	1 cut(s)	167
BsmI	GAATGC	1 cut(s)	82
Bsp143I	GATC	1 cut(s)	178
BspHI	TCATGA	1 cut(s)	72
BspPI	GGATC	1 cut(s)	173
BssMI	GATC	1 cut(s)	178
BstC8I	GCNNGC	1 cut(s)	216
BstF5I	GGATG	2 cut(s)	179, 242
BstKTI	GATC	1 cut(s)	181
BstMBI	GATC	1 cut(s)	178
BstV2I	GAAGAC	1 cut(s)	132
BtsCI	GGATG	2 cut(s)	179, 242
Cac8I	GCNNGC	1 cut(s)	216
CciI	TCATGA	1 cut(s)	72
Csp6I	GTAC	3 cut(s)	44, 142, 226
CviAII	CATG	1 cut(s)	73
CviJI	RGCY	2 cut(s)	86, 214
CviKI_1	RGCY	2 cut(s)	86, 214
CviQI	GTAC	3 cut(s)	44, 142, 226
DpnI	GATC	1 cut(s)	180
DpnII	GATC	1 cut(s)	178
DraI	TTTAAA	1 cut(s)	243
Eco32I	GATATC	1 cut(s)	104
Eco57I	CTGAAG	1 cut(s)	102
EcoRV	GATATC	1 cut(s)	104
FaeI	CATG	1 cut(s)	76
FaiI	YATR	3 cut(s)	32, 74, 271
FatI	CATG	1 cut(s)	72
FblI	GTMKAC	1 cut(s)	202
FokI	GGATG	2 cut(s)	186, 249
Hin1II	CATG	1 cut(s)	76
HinfI	GANTC	1 cut(s)	136
HphI	GGTGA	1 cut(s)	134
Hpy166II	GTNNAC	1 cut(s)	203
Hpy188III	TCNNGA	1 cut(s)	73
Hpy8I	GTNNAC	1 cut(s)	203
Hpy99I	CGWCG	1 cut(s)	234
HpyCH4IV	ACGT	1 cut(s)	197
HpySE526I	ACGT	1 cut(s)	197
Hsp92II	CATG	1 cut(s)	76
Kzo9I	GATC	1 cut(s)	178
LpnPI	CCDG	1 cut(s)	228
LweI	GCATC	1 cut(s)	78
MaeII	ACGT	1 cut(s)	197
MalI	GATC	1 cut(s)	180
MboI	GATC	1 cut(s)	178
MboII	GAAGA	1 cut(s)	137
MluCI	AATT	3 cut(s)	7, 96, 246
MnlI	CCTC	5 cut(s)	8, 139, 164, 201, 227
MseI	TTAA	2 cut(s)	65, 242
Mva1269I	GAATGC	1 cut(s)	82
NdeII	GATC	1 cut(s)	178
NlaIII	CATG	1 cut(s)	76
PagI	TCATGA	1 cut(s)	72
PctI	GAATGC	1 cut(s)	82
PfeI	GAWTC	1 cut(s)	136
Pfl23II	CGTACG	1 cut(s)	141
PspLI	CGTACG	1 cut(s)	141
RsaI	GTAC	3 cut(s)	45, 143, 227
RsaNI	GTAC	3 cut(s)	44, 142, 226
SaqAI	TTAA	2 cut(s)	65, 242
Sau3AI	GATC	1 cut(s)	178
ScaI	AGTACT	1 cut(s)	45
SetI	ASST	3 cut(s)	29, 88, 200
SfaNI	GCATC	1 cut(s)	78
SgeI	CNNG	9 cut(s)	47, 59, 85, 99, 157, 210, 227, 245, 264
Sse9I	AATT	3 cut(s)	7, 96, 246
TaiI	ACGT	1 cut(s)	200
TaqII	GACCGA	1 cut(s)	144
TasI	AATT	3 cut(s)	7, 96, 246
TatI	WGTACW	1 cut(s)	43
TfiI	GAWTC	1 cut(s)	136
Tru1I	TTAA	2 cut(s)	65, 242
Tru9I	TTAA	2 cut(s)	65, 242
TspDTI	ATGAA	1 cut(s)	89
TspGWI	ACGGA	2 cut(s)	129, 213
XmiI	GTMKAC	1 cut(s)	202
ZrmI	AGTACT	1 cut(s)	45

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.