Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0006496

Physical Location & Seq

Genomic Coordinates Forward (+)

13592494 .. 13592736

Gene Structure 243 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00092030.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 243 bp

ATGGTAGTCGTGTTCAAGGCAATCAGTGTTTTGTGCCTAATTATGTTTGTATCAATTCTGGTTGAAGAAGTGAATGGCAAGATTCTGGTTGAAGAAGTGGATGGTGAGAAGTATGTAAACTATGAGGGTATTAAAAAAAATAAAATTCCTCGAGGAAAGGCAAATGAATACCAAGTAATTGAAGGAGCTGCAAATCGATATCAAAGAGGTTGTAGCCGGATAACGCGATGCAGATCCCCGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001558 GO:0003674 GO:0005102 GO:0005179 GO:0005488 GO:0005515 GO:0005575 GO:0005576 GO:0005911 GO:0007154 GO:0007165 GO:0007267 GO:0007275 GO:0008150 GO:0009506 GO:0009966 GO:0009987 GO:0010469 GO:0010646 GO:0019722 GO:0019932 GO:0022622 GO:0023051 GO:0023052 GO:0030054 GO:0030308 GO:0030545 GO:0032501 GO:0032502 GO:0035556 GO:0040008 GO:0045926 GO:0048018 GO:0048046 GO:0048364 GO:0048519 GO:0048523 GO:0048583 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051128 GO:0051716 GO:0055044 GO:0065007 GO:0065009 GO:0098772 GO:0099402

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RALF

Protein Analysis

80

Amino Acids

9.06

Weight (kDa)

9.12

Isoelectric Point (pI)

26.83

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RALF	PF05498	20 - 78	1.3e-11	Rapid ALkalinization Factor (RALF)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0006496)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G23145 AT1G23147 AT1G60625 AT1G60815 AT1G60913 AT1G61563 AT1G61566 AT2G22055 AT2G32835 AT3G04735 AT4G11510
fragaria_vesca	FvH4_6g41850
prunus_persica	Prupe.3G207900_v2.0.a1
rosa_roxburghii	Rroxscaffold_2G00092030 Rroxscaffold_2G00092050 Rroxscaffold_2G00107720 Rroxscaffold_2G00107730
rosa_samantha	Rh2AG386600 Rh2AG386700 Rh2BG541700 Rh2CG373900 Rh2CG374000 Rh2DG409600
rosa_wichuraiana	Rw2G031640 Rw2G043630 Rw2G043650

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AbsI	CCTCGAGG	1 cut(s)	150
AccII	CGCG	1 cut(s)	226
AclWI	GGATC	1 cut(s)	228
AcsI	RAATTY	1 cut(s)	144
AgsI	TTSAA	4 cut(s)	16, 65, 92, 182
AluBI	AGCT	1 cut(s)	188
AluI	AGCT	1 cut(s)	188
AlwI	GGATC	1 cut(s)	228
Ama87I	CYCGRG	1 cut(s)	150
ApeKI	GCWGC	1 cut(s)	188
ApoI	RAATTY	1 cut(s)	144
AsuHPI	GGTGA	1 cut(s)	116
AvaI	CYCGRG	1 cut(s)	150
BbvI	GCAGC	1 cut(s)	175
BccI	CCATC	1 cut(s)	95
BisI	GCNGC	1 cut(s)	189
BlsI	GCNGC	1 cut(s)	190
BmeT110I	CYCGRG	1 cut(s)	150
BmsI	GCATC	1 cut(s)	218
Bsa29I	ATCGAT	1 cut(s)	196
BsaBI	GATNNNNATC	1 cut(s)	232
Bse8I	GATNNNNATC	1 cut(s)	232
BseCI	ATCGAT	1 cut(s)	196
BseGI	GGATG	1 cut(s)	106
BseJI	GATNNNNATC	1 cut(s)	232
BseXI	GCAGC	1 cut(s)	175
Bsh1236I	CGCG	1 cut(s)	226
BshVI	ATCGAT	1 cut(s)	196
BsiHKCI	CYCGRG	1 cut(s)	150
BsiSI	CCGG	1 cut(s)	217
BsoBI	CYCGRG	1 cut(s)	150
Bsp143I	GATC	1 cut(s)	233
BspDI	ATCGAT	1 cut(s)	196
BspFNI	CGCG	1 cut(s)	226
BspPI	GGATC	1 cut(s)	228
BssMI	GATC	1 cut(s)	233
BstF5I	GGATG	1 cut(s)	106
BstFNI	CGCG	1 cut(s)	226
BstKTI	GATC	1 cut(s)	236
BstMBI	GATC	1 cut(s)	233
BstUI	CGCG	1 cut(s)	226
BstV1I	GCAGC	1 cut(s)	175
BstX2I	RGATCY	1 cut(s)	233
BstYI	RGATCY	1 cut(s)	233
Bsu15I	ATCGAT	1 cut(s)	196
BsuTUI	ATCGAT	1 cut(s)	196
BtsCI	GGATG	1 cut(s)	106
BtsIMutI	CAGTG	1 cut(s)	31
ClaI	ATCGAT	1 cut(s)	196
CviJI	RGCY	2 cut(s)	188, 216
CviKI_1	RGCY	2 cut(s)	188, 216
DpnI	GATC	1 cut(s)	235
DpnII	GATC	1 cut(s)	233
Eco32I	GATATC	1 cut(s)	200
Eco88I	CYCGRG	1 cut(s)	150
EcoRV	GATATC	1 cut(s)	200
FaiI	YATR	3 cut(s)	44, 114, 123
Fnu4HI	GCNGC	1 cut(s)	189
FokI	GGATG	1 cut(s)	113
Fsp4HI	GCNGC	1 cut(s)	189
GluI	GCNGC	1 cut(s)	189
HapII	CCGG	1 cut(s)	217
HinfI	GANTC	1 cut(s)	82
HpaII	CCGG	1 cut(s)	217
HphI	GGTGA	1 cut(s)	116
Hpy166II	GTNNAC	1 cut(s)	118
Hpy8I	GTNNAC	1 cut(s)	118
HpyAV	CCTTC	1 cut(s)	176
HpyCH4V	TGCA	2 cut(s)	191, 231
Kzo9I	GATC	1 cut(s)	233
LmnI	GCTCC	1 cut(s)	185
LpnPI	CCDG	3 cut(s)	44, 71, 230
Lsp1109I	GCAGC	1 cut(s)	175
LweI	GCATC	1 cut(s)	218
MalI	GATC	1 cut(s)	235
MboI	GATC	1 cut(s)	233
MboII	GAAGA	2 cut(s)	77, 104
MflI	RGATCY	1 cut(s)	233
MluCI	AATT	4 cut(s)	39, 54, 144, 177
MnlI	CCTC	4 cut(s)	118, 146, 159, 200
MseI	TTAA	1 cut(s)	132
MspI	CCGG	1 cut(s)	217
MvnI	CGCG	1 cut(s)	226
NdeII	GATC	1 cut(s)	233
PaeR7I	CTCGAG	1 cut(s)	150
PfeI	GAWTC	1 cut(s)	82
PkrI	GCNGC	1 cut(s)	190
PspXI	VCTCGAGB	1 cut(s)	150
PsuI	RGATCY	1 cut(s)	233
SaqAI	TTAA	1 cut(s)	132
SatI	GCNGC	1 cut(s)	189
Sau3AI	GATC	1 cut(s)	233
SetI	ASST	2 cut(s)	190, 211
SfaNI	GCATC	1 cut(s)	218
Sfr274I	CTCGAG	1 cut(s)	150
SlaI	CTCGAG	1 cut(s)	150
SmlI	CTYRAG	1 cut(s)	150
SmoI	CTYRAG	1 cut(s)	150
Sse9I	AATT	4 cut(s)	39, 54, 144, 177
TaqI	TCGA	2 cut(s)	151, 196
TasI	AATT	4 cut(s)	39, 54, 144, 177
TfiI	GAWTC	1 cut(s)	82
Tru1I	TTAA	1 cut(s)	132
Tru9I	TTAA	1 cut(s)	132
TscAI	CASTG	1 cut(s)	31
TseI	GCWGC	1 cut(s)	188
TspDTI	ATGAA	1 cut(s)	180
TspRI	CASTG	1 cut(s)	31
XapI	RAATTY	1 cut(s)	144
XhoI	CTCGAG	1 cut(s)	150

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.