Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0006496

Physical Location & Seq

Genomic Coordinates Reverse (-)

22714921 .. 22715448

Gene Structure 528 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G61563.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 249 bp

ATGGGGATGTCTAAAAGTATCAAGGTTATCCTATCTCTTGCTCTTGTAGTGTTCTTGGCACTTGCAGGAACCAAGGTTGAGGCCTCCGTAAGATACATAACTTATCCTGCTATCGATCGTGGAGATCATGCTGTACATTGTGACAAAGCCCACCCTAACACCTGCAAGAAGAAACAAGCAAATCCTTACAGGAGAGGATGCGGAGTGCTCGAAGGTTGCCATCGTGAAACAGGTCCAAAGCCCACCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005102 GO:0005179 GO:0005488 GO:0005515 GO:0005575 GO:0005576 GO:0007154 GO:0007165 GO:0007267 GO:0008150 GO:0009966 GO:0009987 GO:0010469 GO:0010646 GO:0019722 GO:0019932 GO:0023051 GO:0023052 GO:0030545 GO:0035556 GO:0048018 GO:0048046 GO:0048583 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0065009 GO:0098772

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RALF

Protein Analysis

82

Amino Acids

8.91

Weight (kDa)

9.55

Isoelectric Point (pI)

21.75

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RALF	PF05498	16 - 75	4.4e-14	Rapid ALkalinization Factor (RALF)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0006496)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G23145 AT1G23147 AT1G60625 AT1G60815 AT1G60913 AT1G61563 AT1G61566 AT2G22055 AT2G32835 AT3G04735 AT4G11510
fragaria_vesca	FvH4_6g41850
prunus_persica	Prupe.3G207900_v2.0.a1
rosa_roxburghii	Rroxscaffold_2G00092030 Rroxscaffold_2G00092050 Rroxscaffold_2G00107720 Rroxscaffold_2G00107730
rosa_samantha	Rh2AG386600 Rh2AG386700 Rh2BG541700 Rh2CG373900 Rh2CG374000 Rh2DG409600
rosa_wichuraiana	Rw2G031640 Rw2G043630 Rw2G043650

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	170
Acc36I	ACCTGC	1 cut(s)	170
AciI	CCGC	1 cut(s)	201
AfaI	GTAC	1 cut(s)	135
Alw21I	GWGCWC	1 cut(s)	210
AoxI	GGCC	1 cut(s)	81
AspS9I	GGNCC	1 cut(s)	233
AvaII	GGWCC	1 cut(s)	233
Bbv12I	GWGCWC	1 cut(s)	210
BccI	CCATC	1 cut(s)	228
BfuAI	ACCTGC	1 cut(s)	170
Bme18I	GGWCC	1 cut(s)	233
BmgT120I	GGNCC	1 cut(s)	233
BmiI	GGNNCC	1 cut(s)	70
BmsI	GCATC	1 cut(s)	188
Bsa29I	ATCGAT	1 cut(s)	114
BsaJI	CCNNGG	1 cut(s)	72
BseCI	ATCGAT	1 cut(s)	114
BseDI	CCNNGG	1 cut(s)	72
BseGI	GGATG	2 cut(s)	12, 203
Bsh1285I	CGRYCG	1 cut(s)	118
BshFI	GGCC	1 cut(s)	83
BshVI	ATCGAT	1 cut(s)	114
BsiEI	CGRYCG	1 cut(s)	118
BsiHKAI	GWGCWC	1 cut(s)	210
BsnI	GGCC	1 cut(s)	83
Bsp1286I	GDGCHC	1 cut(s)	210
Bsp1407I	TGTACA	1 cut(s)	133
Bsp143I	GATC	2 cut(s)	115, 124
BspACI	CCGC	1 cut(s)	201
BspANI	GGCC	1 cut(s)	83
BspDI	ATCGAT	1 cut(s)	114
BspLI	GGNNCC	1 cut(s)	70
BspMI	ACCTGC	1 cut(s)	170
BsrGI	TGTACA	1 cut(s)	133
BssECI	CCNNGG	1 cut(s)	72
BssMI	GATC	2 cut(s)	115, 124
BssT1I	CCWWGG	1 cut(s)	72
BstAUI	TGTACA	1 cut(s)	133
BstF5I	GGATG	2 cut(s)	12, 203
BstKTI	GATC	2 cut(s)	118, 127
BstMBI	GATC	2 cut(s)	115, 124
BstMCI	CGRYCG	1 cut(s)	118
Bsu15I	ATCGAT	1 cut(s)	114
BsuRI	GGCC	1 cut(s)	83
BsuTUI	ATCGAT	1 cut(s)	114
BtsCI	GGATG	2 cut(s)	12, 203
BveI	ACCTGC	1 cut(s)	170
Cfr13I	GGNCC	1 cut(s)	233
ClaI	ATCGAT	1 cut(s)	114
Csp6I	GTAC	1 cut(s)	134
CviAII	CATG	1 cut(s)	128
CviJI	RGCY	3 cut(s)	83, 149, 241
CviKI_1	RGCY	3 cut(s)	83, 149, 241
CviQI	GTAC	1 cut(s)	134
DpnI	GATC	2 cut(s)	117, 126
DpnII	GATC	2 cut(s)	115, 124
Eco130I	CCWWGG	1 cut(s)	72
Eco147I	AGGCCT	1 cut(s)	83
Eco47I	GGWCC	1 cut(s)	233
EcoT14I	CCWWGG	1 cut(s)	72
ErhI	CCWWGG	1 cut(s)	72
FaeI	CATG	1 cut(s)	131
FaiI	YATR	2 cut(s)	98, 129
FatI	CATG	1 cut(s)	127
FokI	GGATG	2 cut(s)	19, 210
HaeIII	GGCC	1 cut(s)	83
Hin1II	CATG	1 cut(s)	131
Hpy188III	TCNNGA	1 cut(s)	224
HpyAV	CCTTC	1 cut(s)	206
HpyCH4V	TGCA	2 cut(s)	65, 165
Hsp92II	CATG	1 cut(s)	131
Kzo9I	GATC	2 cut(s)	115, 124
LpnPI	CCDG	5 cut(s)	51, 120, 175, 175, 216
LweI	GCATC	1 cut(s)	188
MaeIII	GTNAC	1 cut(s)	140
MalI	GATC	2 cut(s)	117, 126
MboI	GATC	2 cut(s)	115, 124
MboII	GAAGA	1 cut(s)	181
MhlI	GDGCHC	1 cut(s)	210
MnlI	CCTC	3 cut(s)	73, 94, 188
NdeII	GATC	2 cut(s)	115, 124
NlaIII	CATG	1 cut(s)	131
NlaIV	GGNNCC	1 cut(s)	70
NmuCI	GTSAC	1 cut(s)	140
PaqCI	CACCTGC	1 cut(s)	170
PceI	AGGCCT	1 cut(s)	83
Ple19I	CGATCG	1 cut(s)	118
PspN4I	GGNNCC	1 cut(s)	70
PspPI	GGNCC	1 cut(s)	233
PvuI	CGATCG	1 cut(s)	118
RsaI	GTAC	1 cut(s)	135
RsaNI	GTAC	1 cut(s)	134
Sau3AI	GATC	2 cut(s)	115, 124
Sau96I	GGNCC	1 cut(s)	233
SduI	GDGCHC	1 cut(s)	210
SetI	ASST	6 cut(s)	27, 78, 164, 217, 235, 248
SfaNI	GCATC	1 cut(s)	188
SinI	GGWCC	1 cut(s)	233
SseBI	AGGCCT	1 cut(s)	83
SsiI	CCGC	1 cut(s)	201
StuI	AGGCCT	1 cut(s)	83
StyI	CCWWGG	1 cut(s)	72
TaqI	TCGA	2 cut(s)	114, 210
TatI	WGTACW	1 cut(s)	133
TseFI	GTSAC	1 cut(s)	140
Tsp45I	GTSAC	1 cut(s)	140
TspGWI	ACGGA	1 cut(s)	76
VpaK11BI	GGWCC	1 cut(s)	233

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.