Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2A

Orthogroup ID

OG0006496

Physical Location & Seq

Genomic Coordinates Forward (+)

57774875 .. 57778394

Gene Structure 3520 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2AG386600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 435 bp

ATGGCGGTTGTGTTCAAGACAATGAGTGTTTTGTGCCTAATTATGTTTGCATTAGTTTTGGTTGAAGAAGTAGATAGCACACAGTTTATACACTACGAACCTATTGAAAGAGGTGATCCCACTCCTGGATGCAGCCCAAAGTATCCACAGAATTGCAACCATGGAGATGCAAATCATTATGAAAGAGGTTGTAACCCGCAATTGGGATGCAGGGACGGTCCCCCGAAACCTGAGGAGAATGTTAGAGGTGTGTACCGAAAGCAATCTGGAAATTATTTTGTTGACAAGATTGTGGAGGAATTTATGAAAGTTGCTTATTCACCTACATTAGCAAGCTATAACTTCAACTTACACAACTTGAAGAAAGAAGGTGGTCCGCCTATTGAAGAGTTTCTGCGATCTTTGCCGTTGGAAAAGTGGTGCAATGCATTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DBD_Tnp_Mut MULE SWIM

Protein Analysis

144

Amino Acids

16.39

Weight (kDa)

5.8

Isoelectric Point (pI)

51.49

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006496)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G23145 AT1G23147 AT1G60625 AT1G60815 AT1G60913 AT1G61563 AT1G61566 AT2G22055 AT2G32835 AT3G04735 AT4G11510
fragaria_vesca	FvH4_6g41850
prunus_persica	Prupe.3G207900_v2.0.a1
rosa_roxburghii	Rroxscaffold_2G00092030 Rroxscaffold_2G00092050 Rroxscaffold_2G00107720 Rroxscaffold_2G00107730
rosa_samantha	Rh2AG386600 Rh2AG386700 Rh2BG541700 Rh2CG373900 Rh2CG374000 Rh2DG409600
rosa_wichuraiana	Rw2G031640 Rw2G043630 Rw2G043650

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	5, 197, 377
AclWI	GGATC	1 cut(s)	110
AcsI	RAATTY	1 cut(s)	299
AfaI	GTAC	1 cut(s)	254
AfiI	CCNNNNNNNGG	3 cut(s)	125, 202, 203
AgsI	TTSAA	6 cut(s)	16, 65, 107, 346, 361, 386
AjnI	CCWGG	1 cut(s)	124
AluBI	AGCT	1 cut(s)	336
AluI	AGCT	1 cut(s)	336
AlwI	GGATC	1 cut(s)	110
ApeKI	GCWGC	1 cut(s)	132
ApoI	RAATTY	1 cut(s)	299
Asp700I	GAANNNNTTC	1 cut(s)	390
AspS9I	GGNCC	2 cut(s)	218, 374
AsuHPI	GGTGA	2 cut(s)	125, 312
AvaII	GGWCC	2 cut(s)	218, 374
AxyI	CCTNAGG	1 cut(s)	231
BbvI	GCAGC	1 cut(s)	144
BceAI	ACGGC	1 cut(s)	391
BciT130I	CCWGG	1 cut(s)	126
BciVI	GTATCC	1 cut(s)	153
BfuI	GTATCC	1 cut(s)	153
BisI	GCNGC	1 cut(s)	133
BlsI	GCNGC	1 cut(s)	134
Bme1390I	CCNGG	1 cut(s)	126
Bme18I	GGWCC	2 cut(s)	218, 374
BmgT120I	GGNCC	2 cut(s)	218, 374
BmiI	GGNNCC	1 cut(s)	220
BmrFI	CCNGG	1 cut(s)	126
BmsI	GCATC	3 cut(s)	119, 157, 197
BsaBI	GATNNNNATC	1 cut(s)	171
BsaJI	CCNNGG	1 cut(s)	160
Bsc4I	CCNNNNNNNGG	3 cut(s)	125, 202, 203
Bse21I	CCTNAGG	1 cut(s)	231
Bse3DI	GCAATG	1 cut(s)	430
Bse8I	GATNNNNATC	1 cut(s)	171
BseBI	CCWGG	1 cut(s)	126
BseDI	CCNNGG	1 cut(s)	160
BseGI	GGATG	2 cut(s)	134, 212
BseJI	GATNNNNATC	1 cut(s)	171
BseLI	CCNNNNNNNGG	3 cut(s)	125, 202, 203
BseMI	GCAATG	1 cut(s)	430
BseMII	CTCAG	1 cut(s)	222
BseRI	GAGGAG	1 cut(s)	248
BseXI	GCAGC	1 cut(s)	144
BslFI	GGGAC	2 cut(s)	204, 227
BslI	CCNNNNNNNGG	3 cut(s)	125, 202, 203
BsmFI	GGGAC	2 cut(s)	204, 227
Bsp143I	GATC	2 cut(s)	115, 398
Bsp19I	CCATGG	1 cut(s)	160
BspACI	CCGC	3 cut(s)	5, 197, 377
BspCNI	CTCAG	1 cut(s)	223
BspLI	GGNNCC	1 cut(s)	220
BspPI	GGATC	1 cut(s)	110
BsrDI	GCAATG	1 cut(s)	430
BssECI	CCNNGG	1 cut(s)	160
BssMI	GATC	2 cut(s)	115, 398
BssT1I	CCWWGG	1 cut(s)	160
Bst2UI	CCWGG	1 cut(s)	126
Bst4CI	ACNGT	2 cut(s)	84, 218
Bst6I	CTCTTC	1 cut(s)	381
BstC8I	GCNNGC	1 cut(s)	334
BstDEI	CTNAG	1 cut(s)	231
BstDSI	CCRYGG	1 cut(s)	160
BstF5I	GGATG	2 cut(s)	134, 212
BstKTI	GATC	2 cut(s)	118, 401
BstMBI	GATC	2 cut(s)	115, 398
BstMWI	GCNNNNNNNGC	1 cut(s)	403
BstNI	CCWGG	1 cut(s)	126
BstSCI	CCNGG	1 cut(s)	124
BstV1I	GCAGC	1 cut(s)	144
Bsu36I	CCTNAGG	1 cut(s)	231
BsuI	GTATCC	1 cut(s)	153
BtgI	CCRYGG	1 cut(s)	160
BtsCI	GGATG	2 cut(s)	134, 212
Cac8I	GCNNGC	1 cut(s)	334
Cfr13I	GGNCC	2 cut(s)	218, 374
Csp6I	GTAC	1 cut(s)	253
CviAII	CATG	1 cut(s)	161
CviJI	RGCY	2 cut(s)	135, 336
CviKI_1	RGCY	2 cut(s)	135, 336
CviQI	GTAC	1 cut(s)	253
DdeI	CTNAG	1 cut(s)	231
DpnI	GATC	2 cut(s)	117, 400
DpnII	GATC	2 cut(s)	115, 398
Eam1104I	CTCTTC	1 cut(s)	381
EarI	CTCTTC	1 cut(s)	381
EciI	GGCGGA	1 cut(s)	366
Eco130I	CCWWGG	1 cut(s)	160
Eco47I	GGWCC	2 cut(s)	218, 374
Eco81I	CCTNAGG	1 cut(s)	231
EcoRII	CCWGG	1 cut(s)	124
EcoT14I	CCWWGG	1 cut(s)	160
EcoT22I	ATGCAT	1 cut(s)	430
ErhI	CCWWGG	1 cut(s)	160
FaeI	CATG	1 cut(s)	164
FaiI	YATR	6 cut(s)	44, 89, 162, 180, 305, 339
FaqI	GGGAC	2 cut(s)	204, 227
FatI	CATG	1 cut(s)	160
FauI	CCCGC	1 cut(s)	204
Fnu4HI	GCNGC	1 cut(s)	133
FokI	GGATG	2 cut(s)	141, 219
Fsp4HI	GCNGC	1 cut(s)	133
GluI	GCNGC	1 cut(s)	133
Hin1II	CATG	1 cut(s)	164
HincII	GTYRAC	1 cut(s)	283
HindII	GTYRAC	1 cut(s)	283
HphI	GGTGA	2 cut(s)	125, 312
Hpy166II	GTNNAC	2 cut(s)	253, 283
Hpy188III	TCNNGA	2 cut(s)	16, 267
Hpy8I	GTNNAC	2 cut(s)	253, 283
HpyAV	CCTTC	1 cut(s)	362
HpyCH4III	ACNGT	2 cut(s)	84, 218
HpyCH4V	TGCA	7 cut(s)	50, 132, 156, 170, 210, 423, 428
HpyF10VI	GCNNNNNNNGC	1 cut(s)	403
HpyF3I	CTNAG	1 cut(s)	231
Hsp92II	CATG	1 cut(s)	164
Kzo9I	GATC	2 cut(s)	115, 398
LpnPI	CCDG	5 cut(s)	111, 138, 196, 243, 252
Lsp1109I	GCAGC	1 cut(s)	144
LweI	GCATC	3 cut(s)	119, 157, 197
MaeIII	GTNAC	1 cut(s)	191
MalI	GATC	2 cut(s)	117, 400
MboI	GATC	2 cut(s)	115, 398
MboII	GAAGA	3 cut(s)	77, 373, 398
MfeI	CAATTG	1 cut(s)	200
MluCI	AATT	5 cut(s)	39, 151, 200, 271, 299
MmeI	TCCRAC	1 cut(s)	390
MnlI	CCTC	5 cut(s)	104, 179, 226, 239, 289
Mph1103I	ATGCAT	1 cut(s)	430
MroXI	GAANNNNTTC	1 cut(s)	390
MslI	CAYNNNNRTG	1 cut(s)	165
MspR9I	CCNGG	1 cut(s)	126
MunI	CAATTG	1 cut(s)	200
MvaI	CCWGG	1 cut(s)	126
MwoI	GCNNNNNNNGC	1 cut(s)	403
NcoI	CCATGG	1 cut(s)	160
NdeII	GATC	2 cut(s)	115, 398
NlaIII	CATG	1 cut(s)	164
NlaIV	GGNNCC	1 cut(s)	220
NsiI	ATGCAT	1 cut(s)	430
PdmI	GAANNNNTTC	1 cut(s)	390
PfoI	TCCNGGA	1 cut(s)	124
PkrI	GCNGC	1 cut(s)	134
Psp6I	CCWGG	1 cut(s)	124
PspGI	CCWGG	1 cut(s)	124
PspN4I	GGNNCC	1 cut(s)	220
PspPI	GGNCC	2 cut(s)	218, 374
RsaI	GTAC	1 cut(s)	254
RsaNI	GTAC	1 cut(s)	253
RseI	CAYNNNNRTG	1 cut(s)	165
SatI	GCNGC	1 cut(s)	133
Sau3AI	GATC	2 cut(s)	115, 398
Sau96I	GGNCC	2 cut(s)	218, 374
ScrFI	CCNGG	1 cut(s)	126
SetI	ASST	8 cut(s)	103, 115, 190, 232, 250, 325, 338, 373
SfaNI	GCATC	3 cut(s)	119, 157, 197
SinI	GGWCC	2 cut(s)	218, 374
SmiMI	CAYNNNNRTG	1 cut(s)	165
Sse9I	AATT	5 cut(s)	39, 151, 200, 271, 299
SsiI	CCGC	3 cut(s)	5, 197, 377
StyD4I	CCNGG	1 cut(s)	124
StyI	CCWWGG	1 cut(s)	160
TaaI	ACNGT	2 cut(s)	84, 218
TasI	AATT	5 cut(s)	39, 151, 200, 271, 299
TseI	GCWGC	1 cut(s)	132
TspDTI	ATGAA	2 cut(s)	195, 320
VpaK11BI	GGWCC	2 cut(s)	218, 374
XapI	RAATTY	1 cut(s)	299
XmnI	GAANNNNTTC	1 cut(s)	390
Zsp2I	ATGCAT	1 cut(s)	430

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.