Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0006496

Physical Location & Seq

Genomic Coordinates Reverse (-)

22717060 .. 22717610

Gene Structure 551 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G61566.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 228 bp

ATGGGGATGTCTAAAAGTATCAAGGTTATCTTATCTCTTGCTCTCGTAGTGTTCTTGGCCCTTGCTGCAACCAAGGTTGAGGCCACAAGATACATAACTTATCCTGCTATCGATCGTGGAGATCATGCTGTACATTGTGACAAAGCCCACCCTAACACCTGCAAGAAGAAAGAAGCAAATCCTTACCAGAGAGGATGCGAGAAGATCAATCGTTGCCGTGGTGGATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005102 GO:0005179 GO:0005488 GO:0005515 GO:0005575 GO:0005576 GO:0007154 GO:0007165 GO:0007267 GO:0008150 GO:0009966 GO:0009987 GO:0010469 GO:0010646 GO:0019722 GO:0019932 GO:0023051 GO:0023052 GO:0030545 GO:0035556 GO:0048018 GO:0048046 GO:0048583 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0065009 GO:0098772

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RALF

Protein Analysis

75

Amino Acids

8.26

Weight (kDa)

9.55

Isoelectric Point (pI)

12.62

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RALF	PF05498	16 - 74	6.6e-17	Rapid ALkalinization Factor (RALF)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0006496)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G23145 AT1G23147 AT1G60625 AT1G60815 AT1G60913 AT1G61563 AT1G61566 AT2G22055 AT2G32835 AT3G04735 AT4G11510
fragaria_vesca	FvH4_6g41850
prunus_persica	Prupe.3G207900_v2.0.a1
rosa_roxburghii	Rroxscaffold_2G00092030 Rroxscaffold_2G00092050 Rroxscaffold_2G00107720 Rroxscaffold_2G00107730
rosa_samantha	Rh2AG386600 Rh2AG386700 Rh2BG541700 Rh2CG373900 Rh2CG374000 Rh2DG409600
rosa_wichuraiana	Rw2G031640 Rw2G043630 Rw2G043650

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	167
Acc36I	ACCTGC	1 cut(s)	167
AfaI	GTAC	1 cut(s)	132
AoxI	GGCC	2 cut(s)	57, 81
ApeKI	GCWGC	1 cut(s)	65
AspS9I	GGNCC	1 cut(s)	58
BbvI	GCAGC	1 cut(s)	52
BceAI	ACGGC	1 cut(s)	201
BfuAI	ACCTGC	1 cut(s)	167
BisI	GCNGC	1 cut(s)	66
BlsI	GCNGC	1 cut(s)	67
BmgT120I	GGNCC	1 cut(s)	58
BmsI	GCATC	1 cut(s)	185
Bsa29I	ATCGAT	1 cut(s)	111
BsaJI	CCNNGG	2 cut(s)	72, 217
BseCI	ATCGAT	1 cut(s)	111
BseDI	CCNNGG	2 cut(s)	72, 217
BseGI	GGATG	2 cut(s)	12, 200
BseXI	GCAGC	1 cut(s)	52
Bsh1285I	CGRYCG	1 cut(s)	115
BshFI	GGCC	2 cut(s)	59, 83
BshVI	ATCGAT	1 cut(s)	111
BsiEI	CGRYCG	1 cut(s)	115
BsnI	GGCC	2 cut(s)	59, 83
Bsp1407I	TGTACA	1 cut(s)	130
Bsp143I	GATC	3 cut(s)	112, 121, 204
BspANI	GGCC	2 cut(s)	59, 83
BspDI	ATCGAT	1 cut(s)	111
BspMI	ACCTGC	1 cut(s)	167
BsrGI	TGTACA	1 cut(s)	130
BssECI	CCNNGG	2 cut(s)	72, 217
BssMI	GATC	3 cut(s)	112, 121, 204
BssT1I	CCWWGG	1 cut(s)	72
BstAUI	TGTACA	1 cut(s)	130
BstDSI	CCRYGG	1 cut(s)	217
BstF5I	GGATG	2 cut(s)	12, 200
BstKTI	GATC	3 cut(s)	115, 124, 207
BstMBI	GATC	3 cut(s)	112, 121, 204
BstMCI	CGRYCG	1 cut(s)	115
BstMWI	GCNNNNNNNGC	1 cut(s)	65
BstV1I	GCAGC	1 cut(s)	52
Bsu15I	ATCGAT	1 cut(s)	111
BsuRI	GGCC	2 cut(s)	59, 83
BsuTUI	ATCGAT	1 cut(s)	111
BtgI	CCRYGG	1 cut(s)	217
BtsCI	GGATG	2 cut(s)	12, 200
BveI	ACCTGC	1 cut(s)	167
Cfr13I	GGNCC	1 cut(s)	58
ClaI	ATCGAT	1 cut(s)	111
Csp6I	GTAC	1 cut(s)	131
CviAII	CATG	1 cut(s)	125
CviJI	RGCY	3 cut(s)	59, 83, 146
CviKI_1	RGCY	3 cut(s)	59, 83, 146
CviQI	GTAC	1 cut(s)	131
DpnI	GATC	3 cut(s)	114, 123, 206
DpnII	GATC	3 cut(s)	112, 121, 204
Eco130I	CCWWGG	1 cut(s)	72
EcoT14I	CCWWGG	1 cut(s)	72
ErhI	CCWWGG	1 cut(s)	72
FaeI	CATG	1 cut(s)	128
FaiI	YATR	2 cut(s)	95, 126
FalI	AAGNNNNNCTT	2 cut(s)	14, 46
FatI	CATG	1 cut(s)	124
Fnu4HI	GCNGC	1 cut(s)	66
FokI	GGATG	2 cut(s)	19, 207
Fsp4HI	GCNGC	1 cut(s)	66
GluI	GCNGC	1 cut(s)	66
HaeIII	GGCC	2 cut(s)	59, 83
Hin1II	CATG	1 cut(s)	128
HpyCH4V	TGCA	2 cut(s)	68, 162
HpyF10VI	GCNNNNNNNGC	1 cut(s)	65
Hsp92II	CATG	1 cut(s)	128
Kzo9I	GATC	3 cut(s)	112, 121, 204
LpnPI	CCDG	3 cut(s)	117, 172, 200
Lsp1109I	GCAGC	1 cut(s)	52
LweI	GCATC	1 cut(s)	185
MaeIII	GTNAC	1 cut(s)	137
MalI	GATC	3 cut(s)	114, 123, 206
MboI	GATC	3 cut(s)	112, 121, 204
MboII	GAAGA	2 cut(s)	178, 214
MnlI	CCTC	2 cut(s)	73, 185
MwoI	GCNNNNNNNGC	1 cut(s)	65
NdeII	GATC	3 cut(s)	112, 121, 204
NlaIII	CATG	1 cut(s)	128
NmuCI	GTSAC	1 cut(s)	137
PaqCI	CACCTGC	1 cut(s)	167
PkrI	GCNGC	1 cut(s)	67
Ple19I	CGATCG	1 cut(s)	115
PspPI	GGNCC	1 cut(s)	58
PvuI	CGATCG	1 cut(s)	115
RsaI	GTAC	1 cut(s)	132
RsaNI	GTAC	1 cut(s)	131
SatI	GCNGC	1 cut(s)	66
Sau3AI	GATC	3 cut(s)	112, 121, 204
Sau96I	GGNCC	1 cut(s)	58
SetI	ASST	3 cut(s)	27, 78, 161
SfaNI	GCATC	1 cut(s)	185
StyI	CCWWGG	1 cut(s)	72
TaqI	TCGA	1 cut(s)	111
TatI	WGTACW	1 cut(s)	130
TseFI	GTSAC	1 cut(s)	137
TseI	GCWGC	1 cut(s)	65
Tsp45I	GTSAC	1 cut(s)	137

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.