Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0006496

Physical Location & Seq

Genomic Coordinates Reverse (-)

32780751 .. 32781347

Gene Structure 597 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g41850.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 264 bp

ATGGCAGCCGCGTTCAAAGCAATGAGTGTTTTGTTCCTAATCATGTTTGTATCAGTTTTGGTTGAAGGAGCAGATGACAAGAAGTATATAGACTACGGTGCTATTGCAAAGCATAAATGTAGCGCTGAAAATCCACAAAACTGTAATAAAGGAATGCAAAAGCCAGAGCCAGAGCCAGGAAGTGCAAATCCATATCAAAGAGGTTGTAGCGCAACAACACGATGCAGGACAGGCCAAACAACATCCCGGAAAGCGAAGTTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005102 GO:0005179 GO:0005488 GO:0005515 GO:0005575 GO:0005576 GO:0007154 GO:0007165 GO:0007267 GO:0008150 GO:0009966 GO:0009987 GO:0010469 GO:0010646 GO:0019722 GO:0019932 GO:0023051 GO:0023052 GO:0030545 GO:0035556 GO:0048018 GO:0048046 GO:0048583 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0065009 GO:0098772

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

88

Amino Acids

9.46

Weight (kDa)

9.36

Isoelectric Point (pI)

21.41

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RALF	PF05498	25 - 76	7.6e-12	Rapid ALkalinization Factor (RALF)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0006496)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G23145 AT1G23147 AT1G60625 AT1G60815 AT1G60913 AT1G61563 AT1G61566 AT2G22055 AT2G32835 AT3G04735 AT4G11510
fragaria_vesca	FvH4_6g41850
prunus_persica	Prupe.3G207900_v2.0.a1
rosa_roxburghii	Rroxscaffold_2G00092030 Rroxscaffold_2G00092050 Rroxscaffold_2G00107720 Rroxscaffold_2G00107730
rosa_samantha	Rh2AG386600 Rh2AG386700 Rh2BG541700 Rh2CG373900 Rh2CG374000 Rh2DG409600
rosa_wichuraiana	Rw2G031640 Rw2G043630 Rw2G043650

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	11
AciI	CCGC	1 cut(s)	9
AfeI	AGCGCT	1 cut(s)	124
AfiI	CCNNNNNNNGG	1 cut(s)	176
AgsI	TTSAA	2 cut(s)	16, 65
AjnI	CCWGG	1 cut(s)	175
Aor51HI	AGCGCT	1 cut(s)	124
AoxI	GGCC	1 cut(s)	232
ApeKI	GCWGC	1 cut(s)	5
AspLEI	GCGC	2 cut(s)	125, 212
AsuC2I	CCSGG	1 cut(s)	247
BbvI	GCAGC	1 cut(s)	17
BciT130I	CCWGG	1 cut(s)	177
BcnI	CCSGG	1 cut(s)	247
BfoI	RGCGCY	1 cut(s)	126
BisI	GCNGC	2 cut(s)	6, 9
BlsI	GCNGC	2 cut(s)	7, 10
Bme1390I	CCNGG	2 cut(s)	177, 247
BmrFI	CCNGG	2 cut(s)	177, 247
BmsI	GCATC	1 cut(s)	212
BpuMI	CCSGG	1 cut(s)	247
Bsc4I	CCNNNNNNNGG	1 cut(s)	176
Bse3DI	GCAATG	1 cut(s)	27
BseBI	CCWGG	1 cut(s)	177
BseGI	GGATG	1 cut(s)	242
BseLI	CCNNNNNNNGG	1 cut(s)	176
BseMI	GCAATG	1 cut(s)	27
BseXI	GCAGC	1 cut(s)	17
Bsh1236I	CGCG	1 cut(s)	11
BshFI	GGCC	1 cut(s)	234
BsiSI	CCGG	1 cut(s)	247
BslI	CCNNNNNNNGG	1 cut(s)	176
BsmI	GAATGC	1 cut(s)	159
BsnI	GGCC	1 cut(s)	234
BspACI	CCGC	1 cut(s)	9
BspANI	GGCC	1 cut(s)	234
BspFNI	CGCG	1 cut(s)	11
BsrDI	GCAATG	1 cut(s)	27
Bst2UI	CCWGG	1 cut(s)	177
Bst4CI	ACNGT	2 cut(s)	98, 143
BstF5I	GGATG	1 cut(s)	242
BstFNI	CGCG	1 cut(s)	11
BstH2I	RGCGCY	1 cut(s)	126
BstHHI	GCGC	2 cut(s)	125, 212
BstMWI	GCNNNNNNNGC	2 cut(s)	17, 231
BstNI	CCWGG	1 cut(s)	177
BstSCI	CCNGG	2 cut(s)	175, 245
BstUI	CGCG	1 cut(s)	11
BstV1I	GCAGC	1 cut(s)	17
BsuRI	GGCC	1 cut(s)	234
BtsCI	GGATG	1 cut(s)	242
CfoI	GCGC	2 cut(s)	125, 212
CviAII	CATG	1 cut(s)	43
CviJI	RGCY	5 cut(s)	8, 163, 169, 175, 234
CviKI_1	RGCY	5 cut(s)	8, 163, 169, 175, 234
Eco47III	AGCGCT	1 cut(s)	124
EcoRII	CCWGG	1 cut(s)	175
FaeI	CATG	1 cut(s)	46
FaiI	YATR	5 cut(s)	44, 87, 89, 114, 193
FatI	CATG	1 cut(s)	42
Fnu4HI	GCNGC	2 cut(s)	6, 9
FokI	GGATG	1 cut(s)	229
Fsp4HI	GCNGC	2 cut(s)	6, 9
GlaI	GCGC	2 cut(s)	124, 211
GluI	GCNGC	2 cut(s)	6, 9
HaeII	RGCGCY	1 cut(s)	126
HaeIII	GGCC	1 cut(s)	234
HapII	CCGG	1 cut(s)	247
HhaI	GCGC	2 cut(s)	125, 212
Hin1II	CATG	1 cut(s)	46
Hin6I	GCGC	2 cut(s)	123, 210
HinP1I	GCGC	2 cut(s)	123, 210
HpaII	CCGG	1 cut(s)	247
HpyAV	CCTTC	1 cut(s)	59
HpyCH4III	ACNGT	2 cut(s)	98, 143
HpyCH4V	TGCA	4 cut(s)	107, 157, 185, 225
HpyF10VI	GCNNNNNNNGC	2 cut(s)	17, 231
Hsp92II	CATG	1 cut(s)	46
HspAI	GCGC	2 cut(s)	123, 210
LmnI	GCTCC	1 cut(s)	68
LpnPI	CCDG	7 cut(s)	162, 177, 183, 189, 211, 216, 260
Lsp1109I	GCAGC	1 cut(s)	17
LweI	GCATC	1 cut(s)	212
MnlI	CCTC	1 cut(s)	194
MspI	CCGG	1 cut(s)	247
MspR9I	CCNGG	2 cut(s)	177, 247
Mva1269I	GAATGC	1 cut(s)	159
MvaI	CCWGG	1 cut(s)	177
MvnI	CGCG	1 cut(s)	11
MwoI	GCNNNNNNNGC	2 cut(s)	17, 231
NciI	CCSGG	1 cut(s)	247
NlaIII	CATG	1 cut(s)	46
PctI	GAATGC	1 cut(s)	159
PfoI	TCCNGGA	1 cut(s)	245
PkrI	GCNGC	2 cut(s)	7, 10
Psp6I	CCWGG	1 cut(s)	175
PspGI	CCWGG	1 cut(s)	175
SatI	GCNGC	2 cut(s)	6, 9
ScrFI	CCNGG	2 cut(s)	177, 247
SetI	ASST	1 cut(s)	205
SfaNI	GCATC	1 cut(s)	212
SsiI	CCGC	1 cut(s)	9
StyD4I	CCNGG	2 cut(s)	175, 245
TaaI	ACNGT	2 cut(s)	98, 143
TauI	GCSGC	1 cut(s)	11
TseI	GCWGC	1 cut(s)	5

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.