Rh2DG409600

Cell signaling peptide that may regulate plant stress, growth, and development. Mediates a rapid alkalinization of extracellular space by mediating a transient increase in the cytoplasmic Ca(2 ) concentration leading to a calcium-dependent signaling events through a cell surface receptor and a concomitant activation of some intracellular mitogen-activated protein kinases (By similarity)

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2D
Physical Location & Seq
Forward (+)
59427032 .. 59429161
2130 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2DG409600.1

Sequence Viewer

Length: 243 bp
ATGGCCATTGTGTTCAAGACGATGAGTGTTTTGTGCCTAATTATGTTTGCATTAGTTTTGATTGAAGAAGTAGATAGCACACGGTTTATACACTATGTACCTATTGAAAGAGGTGATCCCACTCCTGGATGCAGCCCAAAGTATCCACAAAATTGCAACCATGGAGATGCAAATCATTACGAAAGAGGCTGTAACCCGCAATTGGGATGCAGGGACAGTCCCCCGAAACCTGAGCCGTTTTAA

Protein Analysis

80

Amino Acids

8.99

Weight (kDa)

5.81

Isoelectric Point (pI)

70.02

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 197
AclWI GGATC 1 cut(s) 110
AcoI YGGCCR 1 cut(s) 3
AfaI GTAC 1 cut(s) 99
AfiI CCNNNNNNNGG 3 cut(s) 125, 202, 203
AgsI TTSAA 3 cut(s) 16, 65, 107
AjnI CCWGG 1 cut(s) 124
AlwI GGATC 1 cut(s) 110
AoxI GGCC 1 cut(s) 3
ApeKI GCWGC 1 cut(s) 132
AsuHPI GGTGA 1 cut(s) 125
BalI TGGCCA 1 cut(s) 5
BbvI GCAGC 1 cut(s) 144
BceAI ACGGC 1 cut(s) 220
BciT130I CCWGG 1 cut(s) 126
BciVI GTATCC 1 cut(s) 153
BfuI GTATCC 1 cut(s) 153
BisI GCNGC 1 cut(s) 133
BlsI GCNGC 1 cut(s) 134
Bme1390I CCNGG 1 cut(s) 126
BmrFI CCNGG 1 cut(s) 126
BmsI GCATC 3 cut(s) 119, 157, 197
Bpu10I CCTNAGC 1 cut(s) 231
BsaBI GATNNNNATC 1 cut(s) 171
BsaJI CCNNGG 1 cut(s) 160
Bsc4I CCNNNNNNNGG 3 cut(s) 125, 202, 203
Bse8I GATNNNNATC 1 cut(s) 171
BseBI CCWGG 1 cut(s) 126
BseDI CCNNGG 1 cut(s) 160
BseGI GGATG 2 cut(s) 134, 212
BseJI GATNNNNATC 1 cut(s) 171
BseLI CCNNNNNNNGG 3 cut(s) 125, 202, 203
BseMII CTCAG 1 cut(s) 222
BseXI GCAGC 1 cut(s) 144
BshFI GGCC 1 cut(s) 5
BslFI GGGAC 2 cut(s) 204, 227
BslI CCNNNNNNNGG 3 cut(s) 125, 202, 203
BsmFI GGGAC 2 cut(s) 204, 227
BsnI GGCC 1 cut(s) 5
Bsp143I GATC 1 cut(s) 115
Bsp19I CCATGG 1 cut(s) 160
BspACI CCGC 1 cut(s) 197
BspANI GGCC 1 cut(s) 5
BspCNI CTCAG 1 cut(s) 223
BspPI GGATC 1 cut(s) 110
BssECI CCNNGG 1 cut(s) 160
BssMI GATC 1 cut(s) 115
BssT1I CCWWGG 1 cut(s) 160
Bst2UI CCWGG 1 cut(s) 126
Bst4CI ACNGT 2 cut(s) 84, 218
BstDEI CTNAG 1 cut(s) 231
BstDSI CCRYGG 1 cut(s) 160
BstF5I GGATG 2 cut(s) 134, 212
BstKTI GATC 1 cut(s) 118
BstMBI GATC 1 cut(s) 115
BstNI CCWGG 1 cut(s) 126
BstSCI CCNGG 1 cut(s) 124
BstV1I GCAGC 1 cut(s) 144
BsuI GTATCC 1 cut(s) 153
BsuRI GGCC 1 cut(s) 5
BtgI CCRYGG 1 cut(s) 160
BtsCI GGATG 2 cut(s) 134, 212
Csp6I GTAC 1 cut(s) 98
CviAII CATG 1 cut(s) 161
CviJI RGCY 4 cut(s) 5, 135, 189, 235
CviKI_1 RGCY 4 cut(s) 5, 135, 189, 235
CviQI GTAC 1 cut(s) 98
DdeI CTNAG 1 cut(s) 231
DpnI GATC 1 cut(s) 117
DpnII GATC 1 cut(s) 115
EaeI YGGCCR 1 cut(s) 3
Eco130I CCWWGG 1 cut(s) 160
EcoRII CCWGG 1 cut(s) 124
EcoT14I CCWWGG 1 cut(s) 160
ErhI CCWWGG 1 cut(s) 160
FaeI CATG 1 cut(s) 164
FaiI YATR 4 cut(s) 44, 89, 96, 162
FaqI GGGAC 2 cut(s) 204, 227
FatI CATG 1 cut(s) 160
FauI CCCGC 1 cut(s) 204
Fnu4HI GCNGC 1 cut(s) 133
FokI GGATG 2 cut(s) 141, 219
Fsp4HI GCNGC 1 cut(s) 133
GluI GCNGC 1 cut(s) 133
HaeIII GGCC 1 cut(s) 5
Hin1II CATG 1 cut(s) 164
HphI GGTGA 1 cut(s) 125
Hpy188III TCNNGA 1 cut(s) 16
HpyCH4III ACNGT 2 cut(s) 84, 218
HpyCH4V TGCA 5 cut(s) 50, 132, 156, 170, 210
HpyF3I CTNAG 1 cut(s) 231
Hsp92II CATG 1 cut(s) 164
Kzo9I GATC 1 cut(s) 115
LpnPI CCDG 3 cut(s) 111, 138, 196
Lsp1109I GCAGC 1 cut(s) 144
LweI GCATC 3 cut(s) 119, 157, 197
MaeIII GTNAC 1 cut(s) 191
MalI GATC 1 cut(s) 117
MboI GATC 1 cut(s) 115
MboII GAAGA 1 cut(s) 77
MfeI CAATTG 1 cut(s) 200
MlsI TGGCCA 1 cut(s) 5
MluCI AATT 3 cut(s) 39, 151, 200
MluNI TGGCCA 1 cut(s) 5
MnlI CCTC 2 cut(s) 104, 179
Mox20I TGGCCA 1 cut(s) 5
MscI TGGCCA 1 cut(s) 5
MseI TTAA 1 cut(s) 241
MslI CAYNNNNRTG 1 cut(s) 165
Msp20I TGGCCA 1 cut(s) 5
MspR9I CCNGG 1 cut(s) 126
MunI CAATTG 1 cut(s) 200
MvaI CCWGG 1 cut(s) 126
NcoI CCATGG 1 cut(s) 160
NdeII GATC 1 cut(s) 115
NlaIII CATG 1 cut(s) 164
PfoI TCCNGGA 1 cut(s) 124
PkrI GCNGC 1 cut(s) 134
Psp6I CCWGG 1 cut(s) 124
PspGI CCWGG 1 cut(s) 124
RsaI GTAC 1 cut(s) 99
RsaNI GTAC 1 cut(s) 98
RseI CAYNNNNRTG 1 cut(s) 165
SaqAI TTAA 1 cut(s) 241
SatI GCNGC 1 cut(s) 133
Sau3AI GATC 1 cut(s) 115
ScrFI CCNGG 1 cut(s) 126
SetI ASST 3 cut(s) 103, 115, 232
SfaNI GCATC 3 cut(s) 119, 157, 197
SgeI CNNG 8 cut(s) 28, 93, 137, 138, 173, 208, 223, 235
SmiMI CAYNNNNRTG 1 cut(s) 165
Sse9I AATT 3 cut(s) 39, 151, 200
SsiI CCGC 1 cut(s) 197
StyD4I CCNGG 1 cut(s) 124
StyI CCWWGG 1 cut(s) 160
TaaI ACNGT 2 cut(s) 84, 218
TasI AATT 3 cut(s) 39, 151, 200
Tru1I TTAA 1 cut(s) 241
Tru9I TTAA 1 cut(s) 241
TseI GCWGC 1 cut(s) 132
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.