Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0006496

Physical Location & Seq

Genomic Coordinates Forward (+)

9379465 .. 9380114

Gene Structure 650 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT2G22055.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 240 bp

ATGGGGATGTCAAAAAGTATCAAGGTTATTGTATCTCTTGCTCTCATATTATTTTTGGCCCTTGCAGCAACCAAGGTTGAAGCCACAAGATACATAAGTTATCGTGGTATGAATCATGGAGATCATGCTATACATTGTGACAAAGCCCACCCTAACACCTGCAAGAAGCAAGTAGCAAATCCTTACAGGAGAGGATGCGGAACAATCGAACGTTGCCGTCGTGATACAGGTAGAAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005102 GO:0005179 GO:0005488 GO:0005515 GO:0005575 GO:0005576 GO:0007154 GO:0007165 GO:0007267 GO:0008150 GO:0009966 GO:0009987 GO:0010469 GO:0010646 GO:0019722 GO:0019932 GO:0023051 GO:0023052 GO:0030545 GO:0035556 GO:0048018 GO:0048046 GO:0048583 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0065009 GO:0098772

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RALF

Protein Analysis

79

Amino Acids

8.83

Weight (kDa)

10.04

Isoelectric Point (pI)

22.97

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RALF	PF05498	19 - 74	4.9e-14	Rapid ALkalinization Factor (RALF)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0006496)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G23145 AT1G23147 AT1G60625 AT1G60815 AT1G60913 AT1G61563 AT1G61566 AT2G22055 AT2G32835 AT3G04735 AT4G11510
fragaria_vesca	FvH4_6g41850
prunus_persica	Prupe.3G207900_v2.0.a1
rosa_roxburghii	Rroxscaffold_2G00092030 Rroxscaffold_2G00092050 Rroxscaffold_2G00107720 Rroxscaffold_2G00107730
rosa_samantha	Rh2AG386600 Rh2AG386700 Rh2BG541700 Rh2CG373900 Rh2CG374000 Rh2DG409600
rosa_wichuraiana	Rw2G031640 Rw2G043630 Rw2G043650

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	167
Acc36I	ACCTGC	1 cut(s)	167
AciI	CCGC	1 cut(s)	198
AclI	AACGTT	1 cut(s)	211
AgsI	TTSAA	1 cut(s)	80
AoxI	GGCC	1 cut(s)	57
ApeKI	GCWGC	1 cut(s)	65
AspS9I	GGNCC	1 cut(s)	58
BaeI	ACNNNNGTAYC	2 cut(s)	82, 115
BbvI	GCAGC	1 cut(s)	77
BceAI	ACGGC	1 cut(s)	201
BfuAI	ACCTGC	1 cut(s)	167
BisI	GCNGC	1 cut(s)	66
BlsI	GCNGC	1 cut(s)	67
BmgT120I	GGNCC	1 cut(s)	58
BmsI	GCATC	1 cut(s)	185
BsaJI	CCNNGG	1 cut(s)	72
BseDI	CCNNGG	1 cut(s)	72
BseGI	GGATG	2 cut(s)	12, 200
BseXI	GCAGC	1 cut(s)	77
BshFI	GGCC	1 cut(s)	59
BsnI	GGCC	1 cut(s)	59
Bsp143I	GATC	1 cut(s)	121
BspACI	CCGC	1 cut(s)	198
BspANI	GGCC	1 cut(s)	59
BspMI	ACCTGC	1 cut(s)	167
BssECI	CCNNGG	1 cut(s)	72
BssMI	GATC	1 cut(s)	121
BssT1I	CCWWGG	1 cut(s)	72
BstF5I	GGATG	2 cut(s)	12, 200
BstKTI	GATC	1 cut(s)	124
BstMBI	GATC	1 cut(s)	121
BstMWI	GCNNNNNNNGC	1 cut(s)	65
BstV1I	GCAGC	1 cut(s)	77
BsuRI	GGCC	1 cut(s)	59
BtsCI	GGATG	2 cut(s)	12, 200
BveI	ACCTGC	1 cut(s)	167
Cfr13I	GGNCC	1 cut(s)	58
CviAII	CATG	2 cut(s)	116, 125
CviJI	RGCY	3 cut(s)	59, 83, 146
CviKI_1	RGCY	3 cut(s)	59, 83, 146
DpnI	GATC	1 cut(s)	123
DpnII	GATC	1 cut(s)	121
Eco130I	CCWWGG	1 cut(s)	72
EcoT14I	CCWWGG	1 cut(s)	72
ErhI	CCWWGG	1 cut(s)	72
FaeI	CATG	2 cut(s)	119, 128
FaiI	YATR	6 cut(s)	47, 95, 110, 117, 126, 131
FatI	CATG	2 cut(s)	115, 124
Fnu4HI	GCNGC	1 cut(s)	66
FokI	GGATG	2 cut(s)	19, 207
Fsp4HI	GCNGC	1 cut(s)	66
GluI	GCNGC	1 cut(s)	66
HaeIII	GGCC	1 cut(s)	59
Hin1II	CATG	2 cut(s)	119, 128
HinfI	GANTC	1 cut(s)	112
Hpy188III	TCNNGA	1 cut(s)	221
Hpy99I	CGWCG	1 cut(s)	222
HpyCH4IV	ACGT	1 cut(s)	211
HpyCH4V	TGCA	2 cut(s)	65, 162
HpyF10VI	GCNNNNNNNGC	1 cut(s)	65
HpySE526I	ACGT	1 cut(s)	211
Hsp92II	CATG	2 cut(s)	119, 128
Kzo9I	GATC	1 cut(s)	121
LpnPI	CCDG	3 cut(s)	172, 172, 213
Lsp1109I	GCAGC	1 cut(s)	77
LweI	GCATC	1 cut(s)	185
MaeII	ACGT	1 cut(s)	211
MaeIII	GTNAC	1 cut(s)	137
MalI	GATC	1 cut(s)	123
MboI	GATC	1 cut(s)	121
MnlI	CCTC	1 cut(s)	185
MwoI	GCNNNNNNNGC	1 cut(s)	65
NdeII	GATC	1 cut(s)	121
NlaIII	CATG	2 cut(s)	119, 128
NmuCI	GTSAC	1 cut(s)	137
PaqCI	CACCTGC	1 cut(s)	167
PcsI	WCGNNNNNNNCGW	1 cut(s)	217
PfeI	GAWTC	1 cut(s)	112
PkrI	GCNGC	1 cut(s)	67
Psp1406I	AACGTT	1 cut(s)	211
PspPI	GGNCC	1 cut(s)	58
SatI	GCNGC	1 cut(s)	66
Sau3AI	GATC	1 cut(s)	121
Sau96I	GGNCC	1 cut(s)	58
SetI	ASST	5 cut(s)	27, 78, 161, 214, 232
SfaNI	GCATC	1 cut(s)	185
SsiI	CCGC	1 cut(s)	198
StyI	CCWWGG	1 cut(s)	72
TaiI	ACGT	1 cut(s)	214
TaqI	TCGA	1 cut(s)	207
TfiI	GAWTC	1 cut(s)	112
TseFI	GTSAC	1 cut(s)	137
TseI	GCWGC	1 cut(s)	65
Tsp45I	GTSAC	1 cut(s)	137
TspDTI	ATGAA	1 cut(s)	125

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.