Rh2CG374000

Cell signaling peptide that may regulate plant stress, growth, and development. Mediates a rapid alkalinization of extracellular space by mediating a transient increase in the cytoplasmic Ca(2 ) concentration leading to a calcium-dependent signaling events through a cell surface receptor and a concomitant activation of some intracellular mitogen-activated protein kinases (By similarity)

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2C
Physical Location & Seq
Forward (+)
50755992 .. 50757846
1855 bp
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UTR
Exon/CDS
Intron
Rh2CG374000.1

Sequence Viewer

Length: 243 bp
ATGGCGGTTGTGTTCAAGACAATGAGTGTTTTGTGCCTAATTATGTTTGCATTAGTTTTGATTGAAGAAGTAGATAGCACACGGTTTATACAATATGGACCTATTGAAAGAGGTGATCCCAGTCCAGGATGCAGCCCAAAGTATCCACAGAATTGCAACCATGGAGATGCAAATCATTACGAAAGAGGCTGTAACCCGCAATTGGGATGCAGGGAAGGTCCCCCGAAACCTGAGCCATTTTAA

Protein Analysis

80

Amino Acids

8.9

Weight (kDa)

5.53

Isoelectric Point (pI)

59.64

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 5, 197
AclWI GGATC 1 cut(s) 110
AfiI CCNNNNNNNGG 3 cut(s) 125, 202, 203
AgsI TTSAA 3 cut(s) 16, 65, 107
AjnI CCWGG 1 cut(s) 124
AlwI GGATC 1 cut(s) 110
ApeKI GCWGC 1 cut(s) 132
AspS9I GGNCC 2 cut(s) 98, 218
AsuHPI GGTGA 1 cut(s) 125
AvaII GGWCC 2 cut(s) 98, 218
BbvI GCAGC 1 cut(s) 144
BciT130I CCWGG 1 cut(s) 126
BciVI GTATCC 1 cut(s) 153
BfuI GTATCC 1 cut(s) 153
BisI GCNGC 1 cut(s) 133
BlsI GCNGC 1 cut(s) 134
Bme1390I CCNGG 1 cut(s) 126
Bme18I GGWCC 2 cut(s) 98, 218
BmgT120I GGNCC 2 cut(s) 98, 218
BmiI GGNNCC 1 cut(s) 220
BmrFI CCNGG 1 cut(s) 126
BmrI ACTGGG 1 cut(s) 114
BmsI GCATC 3 cut(s) 119, 157, 197
BmuI ACTGGG 1 cut(s) 114
Bpu10I CCTNAGC 1 cut(s) 231
BsaBI GATNNNNATC 1 cut(s) 171
BsaJI CCNNGG 1 cut(s) 160
Bsc4I CCNNNNNNNGG 3 cut(s) 125, 202, 203
Bse1I ACTGG 1 cut(s) 120
Bse8I GATNNNNATC 1 cut(s) 171
BseBI CCWGG 1 cut(s) 126
BseDI CCNNGG 1 cut(s) 160
BseGI GGATG 2 cut(s) 134, 212
BseJI GATNNNNATC 1 cut(s) 171
BseLI CCNNNNNNNGG 3 cut(s) 125, 202, 203
BseMII CTCAG 1 cut(s) 222
BseNI ACTGG 1 cut(s) 120
BseXI GCAGC 1 cut(s) 144
BslFI GGGAC 1 cut(s) 204
BslI CCNNNNNNNGG 3 cut(s) 125, 202, 203
BsmFI GGGAC 1 cut(s) 204
Bsp143I GATC 1 cut(s) 115
Bsp19I CCATGG 1 cut(s) 160
BspACI CCGC 2 cut(s) 5, 197
BspCNI CTCAG 1 cut(s) 223
BspLI GGNNCC 1 cut(s) 220
BspPI GGATC 1 cut(s) 110
BsrI ACTGG 1 cut(s) 120
BssECI CCNNGG 1 cut(s) 160
BssMI GATC 1 cut(s) 115
BssT1I CCWWGG 1 cut(s) 160
Bst2UI CCWGG 1 cut(s) 126
Bst4CI ACNGT 1 cut(s) 84
BstDEI CTNAG 1 cut(s) 231
BstDSI CCRYGG 1 cut(s) 160
BstF5I GGATG 2 cut(s) 134, 212
BstKTI GATC 1 cut(s) 118
BstMBI GATC 1 cut(s) 115
BstNI CCWGG 1 cut(s) 126
BstSCI CCNGG 1 cut(s) 124
BstV1I GCAGC 1 cut(s) 144
BsuI GTATCC 1 cut(s) 153
BtgI CCRYGG 1 cut(s) 160
BtsCI GGATG 2 cut(s) 134, 212
Cfr13I GGNCC 2 cut(s) 98, 218
CviAII CATG 1 cut(s) 161
CviJI RGCY 3 cut(s) 135, 189, 235
CviKI_1 RGCY 3 cut(s) 135, 189, 235
DdeI CTNAG 1 cut(s) 231
DpnI GATC 1 cut(s) 117
DpnII GATC 1 cut(s) 115
Eco130I CCWWGG 1 cut(s) 160
Eco47I GGWCC 2 cut(s) 98, 218
EcoO109I RGGNCCY 1 cut(s) 218
EcoRII CCWGG 1 cut(s) 124
EcoT14I CCWWGG 1 cut(s) 160
ErhI CCWWGG 1 cut(s) 160
FaeI CATG 1 cut(s) 164
FaiI YATR 4 cut(s) 44, 89, 96, 162
FaqI GGGAC 1 cut(s) 204
FatI CATG 1 cut(s) 160
FauI CCCGC 1 cut(s) 204
Fnu4HI GCNGC 1 cut(s) 133
FokI GGATG 2 cut(s) 141, 219
Fsp4HI GCNGC 1 cut(s) 133
GluI GCNGC 1 cut(s) 133
Hin1II CATG 1 cut(s) 164
HphI GGTGA 1 cut(s) 125
Hpy188III TCNNGA 1 cut(s) 16
HpyAV CCTTC 1 cut(s) 209
HpyCH4III ACNGT 1 cut(s) 84
HpyCH4V TGCA 5 cut(s) 50, 132, 156, 170, 210
HpyF3I CTNAG 1 cut(s) 231
Hsp92II CATG 1 cut(s) 164
Kzo9I GATC 1 cut(s) 115
LpnPI CCDG 4 cut(s) 111, 133, 138, 196
Lsp1109I GCAGC 1 cut(s) 144
LweI GCATC 3 cut(s) 119, 157, 197
MaeIII GTNAC 1 cut(s) 191
MalI GATC 1 cut(s) 117
MboI GATC 1 cut(s) 115
MboII GAAGA 1 cut(s) 77
MfeI CAATTG 1 cut(s) 200
MluCI AATT 3 cut(s) 39, 151, 200
MnlI CCTC 2 cut(s) 104, 179
MseI TTAA 1 cut(s) 241
MslI CAYNNNNRTG 1 cut(s) 165
MspR9I CCNGG 1 cut(s) 126
MunI CAATTG 1 cut(s) 200
MvaI CCWGG 1 cut(s) 126
NcoI CCATGG 1 cut(s) 160
NdeII GATC 1 cut(s) 115
NlaIII CATG 1 cut(s) 164
NlaIV GGNNCC 1 cut(s) 220
PfoI TCCNGGA 1 cut(s) 124
PkrI GCNGC 1 cut(s) 134
PpuMI RGGWCCY 1 cut(s) 218
Psp5II RGGWCCY 1 cut(s) 218
Psp6I CCWGG 1 cut(s) 124
PspGI CCWGG 1 cut(s) 124
PspN4I GGNNCC 1 cut(s) 220
PspPI GGNCC 2 cut(s) 98, 218
PspPPI RGGWCCY 1 cut(s) 218
RseI CAYNNNNRTG 1 cut(s) 165
SaqAI TTAA 1 cut(s) 241
SatI GCNGC 1 cut(s) 133
Sau3AI GATC 1 cut(s) 115
Sau96I GGNCC 2 cut(s) 98, 218
ScrFI CCNGG 1 cut(s) 126
SetI ASST 4 cut(s) 103, 115, 220, 232
SfaNI GCATC 3 cut(s) 119, 157, 197
SgeI CNNG 9 cut(s) 28, 93, 132, 137, 138, 173, 208, 223, 235
SinI GGWCC 2 cut(s) 98, 218
SmiMI CAYNNNNRTG 1 cut(s) 165
Sse9I AATT 3 cut(s) 39, 151, 200
SsiI CCGC 2 cut(s) 5, 197
StyD4I CCNGG 1 cut(s) 124
StyI CCWWGG 1 cut(s) 160
TaaI ACNGT 1 cut(s) 84
TasI AATT 3 cut(s) 39, 151, 200
Tru1I TTAA 1 cut(s) 241
Tru9I TTAA 1 cut(s) 241
TseI GCWGC 1 cut(s) 132
VpaK11BI GGWCC 2 cut(s) 98, 218
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.