Rh2CG373900

plant mutator transposase zinc finger

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2C
OG0006496
Physical Location & Seq
Forward (+)
50752099 .. 50755663
3565 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2CG373900.1

Sequence Viewer

Length: 381 bp
ATGGCGGTTGTGTTCAAGACAATGAGTGTTTTGTGCCTAATTATGTTTGCATTAGTTTTGGTTGAAGAAGTAGATAGCACACAGTTTATACACTACGAACCTATTGAAAGAGGTGATCCCACTCCTGGATGCAGCCCAAAGTATCCACAGAATTGCAACCATGGAGATGCAAATCATTATGAAAGAGGTTGTAACCCGCAATTGGGATGCAGGGACGGTCCCCCGAAACCTGAGATTGTGGAGGAATTTATGAAAGTTGCTTATTCACCTACATTAGCAAGCTATAACTTCAACTTACACAACTTGAAGAAAGAAGGTGGTCCGCCTATTGAAGAGTTTCTGCGATCTTTGCCGTTGGAAAAGTGGTGCAATGCATTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DBD_Tnp_Mut MULE SWIM

Protein Analysis

126

Amino Acids

14.25

Weight (kDa)

5.3

Isoelectric Point (pI)

56.82

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 3 cut(s) 5, 197, 323
AclWI GGATC 1 cut(s) 110
AcsI RAATTY 1 cut(s) 245
AfiI CCNNNNNNNGG 3 cut(s) 125, 202, 203
AgsI TTSAA 6 cut(s) 16, 65, 107, 292, 307, 332
AjnI CCWGG 1 cut(s) 124
AluBI AGCT 1 cut(s) 282
AluI AGCT 1 cut(s) 282
AlwI GGATC 1 cut(s) 110
ApeKI GCWGC 1 cut(s) 132
ApoI RAATTY 1 cut(s) 245
Asp700I GAANNNNTTC 1 cut(s) 336
AspS9I GGNCC 2 cut(s) 218, 320
AsuHPI GGTGA 2 cut(s) 125, 258
AvaII GGWCC 2 cut(s) 218, 320
BbvI GCAGC 1 cut(s) 144
BceAI ACGGC 1 cut(s) 337
BciT130I CCWGG 1 cut(s) 126
BciVI GTATCC 1 cut(s) 153
BfuI GTATCC 1 cut(s) 153
BisI GCNGC 1 cut(s) 133
BlsI GCNGC 1 cut(s) 134
Bme1390I CCNGG 1 cut(s) 126
Bme18I GGWCC 2 cut(s) 218, 320
BmgT120I GGNCC 2 cut(s) 218, 320
BmiI GGNNCC 1 cut(s) 220
BmrFI CCNGG 1 cut(s) 126
BmsI GCATC 3 cut(s) 119, 157, 197
BsaBI GATNNNNATC 1 cut(s) 171
BsaJI CCNNGG 1 cut(s) 160
Bsc4I CCNNNNNNNGG 3 cut(s) 125, 202, 203
Bse3DI GCAATG 1 cut(s) 376
Bse8I GATNNNNATC 1 cut(s) 171
BseBI CCWGG 1 cut(s) 126
BseDI CCNNGG 1 cut(s) 160
BseGI GGATG 2 cut(s) 134, 212
BseJI GATNNNNATC 1 cut(s) 171
BseLI CCNNNNNNNGG 3 cut(s) 125, 202, 203
BseMI GCAATG 1 cut(s) 376
BseMII CTCAG 1 cut(s) 222
BseXI GCAGC 1 cut(s) 144
BslFI GGGAC 2 cut(s) 204, 227
BslI CCNNNNNNNGG 3 cut(s) 125, 202, 203
BsmFI GGGAC 2 cut(s) 204, 227
Bsp143I GATC 2 cut(s) 115, 344
Bsp19I CCATGG 1 cut(s) 160
BspACI CCGC 3 cut(s) 5, 197, 323
BspCNI CTCAG 1 cut(s) 223
BspLI GGNNCC 1 cut(s) 220
BspPI GGATC 1 cut(s) 110
BsrDI GCAATG 1 cut(s) 376
BssECI CCNNGG 1 cut(s) 160
BssMI GATC 2 cut(s) 115, 344
BssT1I CCWWGG 1 cut(s) 160
Bst2UI CCWGG 1 cut(s) 126
Bst4CI ACNGT 2 cut(s) 84, 218
Bst6I CTCTTC 1 cut(s) 327
BstC8I GCNNGC 1 cut(s) 280
BstDEI CTNAG 1 cut(s) 231
BstDSI CCRYGG 1 cut(s) 160
BstF5I GGATG 2 cut(s) 134, 212
BstKTI GATC 2 cut(s) 118, 347
BstMBI GATC 2 cut(s) 115, 344
BstMWI GCNNNNNNNGC 1 cut(s) 349
BstNI CCWGG 1 cut(s) 126
BstSCI CCNGG 1 cut(s) 124
BstV1I GCAGC 1 cut(s) 144
BsuI GTATCC 1 cut(s) 153
BtgI CCRYGG 1 cut(s) 160
BtsCI GGATG 2 cut(s) 134, 212
Cac8I GCNNGC 1 cut(s) 280
Cfr13I GGNCC 2 cut(s) 218, 320
CviAII CATG 1 cut(s) 161
CviJI RGCY 2 cut(s) 135, 282
CviKI_1 RGCY 2 cut(s) 135, 282
DdeI CTNAG 1 cut(s) 231
DpnI GATC 2 cut(s) 117, 346
DpnII GATC 2 cut(s) 115, 344
Eam1104I CTCTTC 1 cut(s) 327
EarI CTCTTC 1 cut(s) 327
EciI GGCGGA 1 cut(s) 312
Eco130I CCWWGG 1 cut(s) 160
Eco47I GGWCC 2 cut(s) 218, 320
EcoRII CCWGG 1 cut(s) 124
EcoT14I CCWWGG 1 cut(s) 160
EcoT22I ATGCAT 1 cut(s) 376
ErhI CCWWGG 1 cut(s) 160
FaeI CATG 1 cut(s) 164
FaiI YATR 6 cut(s) 44, 89, 162, 180, 251, 285
FaqI GGGAC 2 cut(s) 204, 227
FatI CATG 1 cut(s) 160
FauI CCCGC 1 cut(s) 204
Fnu4HI GCNGC 1 cut(s) 133
FokI GGATG 2 cut(s) 141, 219
Fsp4HI GCNGC 1 cut(s) 133
GluI GCNGC 1 cut(s) 133
Hin1II CATG 1 cut(s) 164
HphI GGTGA 2 cut(s) 125, 258
Hpy188III TCNNGA 1 cut(s) 16
HpyAV CCTTC 1 cut(s) 308
HpyCH4III ACNGT 2 cut(s) 84, 218
HpyCH4V TGCA 7 cut(s) 50, 132, 156, 170, 210, 369, 374
HpyF10VI GCNNNNNNNGC 1 cut(s) 349
HpyF3I CTNAG 1 cut(s) 231
Hsp92II CATG 1 cut(s) 164
Kzo9I GATC 2 cut(s) 115, 344
LpnPI CCDG 4 cut(s) 111, 138, 196, 243
Lsp1109I GCAGC 1 cut(s) 144
LweI GCATC 3 cut(s) 119, 157, 197
MaeIII GTNAC 1 cut(s) 191
MalI GATC 2 cut(s) 117, 346
MboI GATC 2 cut(s) 115, 344
MboII GAAGA 3 cut(s) 77, 319, 344
MfeI CAATTG 1 cut(s) 200
MluCI AATT 4 cut(s) 39, 151, 200, 245
MmeI TCCRAC 1 cut(s) 336
MnlI CCTC 3 cut(s) 104, 179, 235
Mph1103I ATGCAT 1 cut(s) 376
MroXI GAANNNNTTC 1 cut(s) 336
MslI CAYNNNNRTG 1 cut(s) 165
MspR9I CCNGG 1 cut(s) 126
MunI CAATTG 1 cut(s) 200
MvaI CCWGG 1 cut(s) 126
MwoI GCNNNNNNNGC 1 cut(s) 349
NcoI CCATGG 1 cut(s) 160
NdeII GATC 2 cut(s) 115, 344
NlaIII CATG 1 cut(s) 164
NlaIV GGNNCC 1 cut(s) 220
NsiI ATGCAT 1 cut(s) 376
PdmI GAANNNNTTC 1 cut(s) 336
PfoI TCCNGGA 1 cut(s) 124
PkrI GCNGC 1 cut(s) 134
Psp6I CCWGG 1 cut(s) 124
PspGI CCWGG 1 cut(s) 124
PspN4I GGNNCC 1 cut(s) 220
PspPI GGNCC 2 cut(s) 218, 320
RseI CAYNNNNRTG 1 cut(s) 165
SatI GCNGC 1 cut(s) 133
Sau3AI GATC 2 cut(s) 115, 344
Sau96I GGNCC 2 cut(s) 218, 320
ScrFI CCNGG 1 cut(s) 126
SetI ASST 7 cut(s) 103, 115, 190, 232, 271, 284, 319
SfaNI GCATC 3 cut(s) 119, 157, 197
SinI GGWCC 2 cut(s) 218, 320
SmiMI CAYNNNNRTG 1 cut(s) 165
Sse9I AATT 4 cut(s) 39, 151, 200, 245
SsiI CCGC 3 cut(s) 5, 197, 323
StyD4I CCNGG 1 cut(s) 124
StyI CCWWGG 1 cut(s) 160
TaaI ACNGT 2 cut(s) 84, 218
TasI AATT 4 cut(s) 39, 151, 200, 245
TseI GCWGC 1 cut(s) 132
TspDTI ATGAA 2 cut(s) 195, 266
VpaK11BI GGWCC 2 cut(s) 218, 320
XapI RAATTY 1 cut(s) 245
XmnI GAANNNNTTC 1 cut(s) 336
Zsp2I ATGCAT 1 cut(s) 376
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.