Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0006496

Physical Location & Seq

Genomic Coordinates Reverse (-)

13931166 .. 13931453

Gene Structure 288 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT2G32835.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 288 bp

ATGGTTGCATACGAGAAGAGTCCTATTGTTTTTCTATTTGCTACAATGATGCTTGTAATGTTTTTGTTTTGTGGAAGTGGAGAAGCAAGAACATTAGGGTACGGATCTATTAAAGGAGACCGAATTCCGGCATGTGGCTATAAAAACCCCAATTCATGTGTCAAACAACCAGTTAACCATTACCATAGAGGTTGTGAAAAAATTACCAGGTGTGCTCGTGATGCTGCTCGTTATACTGAATCCTTCAATGTCGATGACGATGAAAGTCCCATTATTAATCTCCATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005102 GO:0005179 GO:0005488 GO:0005515 GO:0005575 GO:0005576 GO:0007154 GO:0007165 GO:0007267 GO:0008150 GO:0009966 GO:0009987 GO:0010469 GO:0010646 GO:0019722 GO:0019932 GO:0023051 GO:0023052 GO:0030545 GO:0035556 GO:0048018 GO:0048046 GO:0048583 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0065009 GO:0098772

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RALF

Protein Analysis

95

Amino Acids

10.67

Weight (kDa)

7.64

Isoelectric Point (pI)

32.97

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RALF	PF05498	29 - 73	8.9e-10	Rapid ALkalinization Factor (RALF)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006496)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G23145 AT1G23147 AT1G60625 AT1G60815 AT1G60913 AT1G61563 AT1G61566 AT2G22055 AT2G32835 AT3G04735 AT4G11510
fragaria_vesca	FvH4_6g41850
prunus_persica	Prupe.3G207900_v2.0.a1
rosa_roxburghii	Rroxscaffold_2G00092030 Rroxscaffold_2G00092050 Rroxscaffold_2G00107720 Rroxscaffold_2G00107730
rosa_samantha	Rh2AG386600 Rh2AG386700 Rh2BG541700 Rh2CG373900 Rh2CG374000 Rh2DG409600
rosa_wichuraiana	Rw2G031640 Rw2G043630 Rw2G043650

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	112
AcsI	RAATTY	1 cut(s)	123
AfaI	GTAC	1 cut(s)	101
AfiI	CCNNNNNNNGG	2 cut(s)	127, 134
AgsI	TTSAA	1 cut(s)	247
AjnI	CCWGG	1 cut(s)	206
Alw21I	GWGCWC	1 cut(s)	217
Alw26I	GTCTC	1 cut(s)	111
AlwI	GGATC	1 cut(s)	112
ApeKI	GCWGC	1 cut(s)	224
ApoI	RAATTY	1 cut(s)	123
AseI	ATTAAT	1 cut(s)	276
BauI	CACGAG	1 cut(s)	216
Bbv12I	GWGCWC	1 cut(s)	217
BbvI	GCAGC	1 cut(s)	211
BciT130I	CCWGG	1 cut(s)	208
BcoDI	GTCTC	1 cut(s)	111
BisI	GCNGC	1 cut(s)	225
BlsI	GCNGC	1 cut(s)	226
Bme1390I	CCNGG	1 cut(s)	208
BmrFI	CCNGG	1 cut(s)	208
BmsI	GCATC	2 cut(s)	39, 211
BsaI	GGTCTC	1 cut(s)	111
Bsc4I	CCNNNNNNNGG	2 cut(s)	127, 134
Bse1I	ACTGG	1 cut(s)	170
BseBI	CCWGG	1 cut(s)	208
BseLI	CCNNNNNNNGG	2 cut(s)	127, 134
BseNI	ACTGG	1 cut(s)	170
BseXI	GCAGC	1 cut(s)	211
BsiHKAI	GWGCWC	1 cut(s)	217
BsiSI	CCGG	1 cut(s)	128
BslFI	GGGAC	1 cut(s)	252
BslI	CCNNNNNNNGG	2 cut(s)	127, 134
BsmAI	GTCTC	1 cut(s)	111
BsmFI	GGGAC	1 cut(s)	252
Bso31I	GGTCTC	1 cut(s)	111
Bsp1286I	GDGCHC	1 cut(s)	217
Bsp143I	GATC	1 cut(s)	104
BspPI	GGATC	1 cut(s)	112
BspTNI	GGTCTC	1 cut(s)	111
BsrI	ACTGG	1 cut(s)	170
BssMI	GATC	1 cut(s)	104
BssSI	CACGAG	1 cut(s)	216
Bst2BI	CACGAG	1 cut(s)	216
Bst2UI	CCWGG	1 cut(s)	208
Bst6I	CTCTTC	1 cut(s)	11
BstKTI	GATC	1 cut(s)	107
BstMAI	GTCTC	1 cut(s)	111
BstMBI	GATC	1 cut(s)	104
BstMWI	GCNNNNNNNGC	1 cut(s)	221
BstNI	CCWGG	1 cut(s)	208
BstNSI	RCATGY	1 cut(s)	135
BstSCI	CCNGG	1 cut(s)	206
BstV1I	GCAGC	1 cut(s)	211
BstX2I	RGATCY	1 cut(s)	104
BstYI	RGATCY	1 cut(s)	104
CsiI	ACCWGGT	1 cut(s)	206
Csp6I	GTAC	1 cut(s)	100
CviAII	CATG	2 cut(s)	132, 156
CviJI	RGCY	1 cut(s)	138
CviKI_1	RGCY	1 cut(s)	138
CviQI	GTAC	1 cut(s)	100
DpnI	GATC	1 cut(s)	106
DpnII	GATC	1 cut(s)	104
Eam1104I	CTCTTC	1 cut(s)	11
EarI	CTCTTC	1 cut(s)	11
Eco31I	GGTCTC	1 cut(s)	111
EcoRI	GAATTC	1 cut(s)	123
EcoRII	CCWGG	1 cut(s)	206
FaeI	CATG	2 cut(s)	135, 159
FaiI	YATR	6 cut(s)	10, 133, 141, 157, 186, 234
FaqI	GGGAC	1 cut(s)	252
FatI	CATG	2 cut(s)	131, 155
Fnu4HI	GCNGC	1 cut(s)	225
Fsp4HI	GCNGC	1 cut(s)	225
GluI	GCNGC	1 cut(s)	225
HapII	CCGG	1 cut(s)	128
Hin1II	CATG	2 cut(s)	135, 159
HincII	GTYRAC	1 cut(s)	175
HindII	GTYRAC	1 cut(s)	175
HinfI	GANTC	2 cut(s)	19, 239
HpaI	GTTAAC	1 cut(s)	175
HpaII	CCGG	1 cut(s)	128
Hpy166II	GTNNAC	1 cut(s)	175
Hpy188III	TCNNGA	1 cut(s)	218
Hpy8I	GTNNAC	1 cut(s)	175
HpyAV	CCTTC	1 cut(s)	253
HpyCH4V	TGCA	1 cut(s)	8
HpyF10VI	GCNNNNNNNGC	1 cut(s)	221
Hsp92II	CATG	2 cut(s)	135, 159
KspAI	GTTAAC	1 cut(s)	175
Kzo9I	GATC	1 cut(s)	104
LpnPI	CCDG	4 cut(s)	141, 183, 193, 220
Lsp1109I	GCAGC	1 cut(s)	211
LweI	GCATC	2 cut(s)	39, 211
MabI	ACCWGGT	1 cut(s)	206
MalI	GATC	1 cut(s)	106
MboI	GATC	1 cut(s)	104
MboII	GAAGA	1 cut(s)	28
MflI	RGATCY	1 cut(s)	104
MhlI	GDGCHC	1 cut(s)	217
MluCI	AATT	3 cut(s)	123, 151, 201
MlyI	GAGTC	1 cut(s)	28
MnlI	CCTC	1 cut(s)	182
MseI	TTAA	3 cut(s)	111, 174, 276
MspI	CCGG	1 cut(s)	128
MspR9I	CCNGG	1 cut(s)	208
MvaI	CCWGG	1 cut(s)	208
MwoI	GCNNNNNNNGC	1 cut(s)	221
NdeII	GATC	1 cut(s)	104
NlaIII	CATG	2 cut(s)	135, 159
NspI	RCATGY	1 cut(s)	135
PfeI	GAWTC	1 cut(s)	239
PkrI	GCNGC	1 cut(s)	226
PleI	GAGTC	1 cut(s)	27
PpsI	GAGTC	1 cut(s)	27
PshBI	ATTAAT	1 cut(s)	276
Psp6I	CCWGG	1 cut(s)	206
PspGI	CCWGG	1 cut(s)	206
PsuI	RGATCY	1 cut(s)	104
RsaI	GTAC	1 cut(s)	101
RsaNI	GTAC	1 cut(s)	100
SaqAI	TTAA	3 cut(s)	111, 174, 276
SatI	GCNGC	1 cut(s)	225
Sau3AI	GATC	1 cut(s)	104
SchI	GAGTC	1 cut(s)	28
ScrFI	CCNGG	1 cut(s)	208
SduI	GDGCHC	1 cut(s)	217
SetI	ASST	2 cut(s)	193, 212
SexAI	ACCWGGT	1 cut(s)	206
SfaNI	GCATC	2 cut(s)	39, 211
Sse9I	AATT	3 cut(s)	123, 151, 201
StyD4I	CCNGG	1 cut(s)	206
TaqI	TCGA	1 cut(s)	252
TaqII	GACCGA	1 cut(s)	135
TasI	AATT	3 cut(s)	123, 151, 201
TfiI	GAWTC	1 cut(s)	239
Tru1I	TTAA	3 cut(s)	111, 174, 276
Tru9I	TTAA	3 cut(s)	111, 174, 276
TseI	GCWGC	1 cut(s)	224
TspDTI	ATGAA	2 cut(s)	144, 276
TspGWI	ACGGA	1 cut(s)	117
VspI	ATTAAT	1 cut(s)	276
XapI	RAATTY	1 cut(s)	123
XceI	RCATGY	1 cut(s)	135

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.