Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0003506

Physical Location & Seq

Genomic Coordinates Forward (+)

10003880 .. 10004581

Gene Structure 702 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G28450.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 558 bp

ATGAATCCCAAGAAAACCAAAGGAAAACAAAAGATTAACATCAAGAAAATTGAAAAAGACGAAGACAGATCGGTCACATTGTCTAAGCGTCTAAATGCTATCTACACTATGATCATTGAGCTTTCCATTCTCTGTGGTGTTGAAGTTGCGTTTATCGGGTATTCTTGCTCTGGAAAACCATACACATTCGGCAGTCCGTCCTTCCAAGCCGTGGTGGAGCGGTTTCTCAACGGCGAGGCCTCGTCGTCTTCTTCATCATCGTTGCAACGATCGGTCAAGAATGCTCACAAGCAAGCGAAGATTCAAGAGCTTTGCAAAAGATACAATAGATTGGTGGAGGAGTTAAAGGTGGACGAAGTCAAAGTCAAGAAGGCAGCTGCATTGGCGGAGACGAGGGCCGTGAATAAGGATGCGTGGTGGAAAGCAGATCCAAATGACGTGAAGGATCACGAAAAGGCGAAGAAGATGATGGAGAAGTATCAAGAGCTCAAAGAGAAACTGCGTGAGGAAGTTGCTTTAAGGATCAAGAGAGGACATGATGAGAATAATAACAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0008150 GO:0009791 GO:0009888 GO:0009889 GO:0009960 GO:0010154 GO:0010468 GO:0010556 GO:0010817 GO:0019219 GO:0019222 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0032879 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0051049 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0065008 GO:0080090 GO:0140110 GO:1903506 GO:2000012 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SRF-TF

Protein Analysis

185

Amino Acids

21.15

Weight (kDa)

9.59

Isoelectric Point (pI)

45.52

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SRF-TF	PF00319	16 - 63	4.8e-16	SRF-type transcription factor (DNA-binding and dimerisation domain)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0003506)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G28450 AT1G28460 AT1G29962 AT1G54760 AT3G04100
fragaria_vesca	FvH4_6g21070
malus_domestica	MD05G1287200.v1.1 MD10G1264600.v1.1 MD13G1257500.v1.1
prunus_persica	Prupe.1G087700_v2.0.a1 Prupe.4G077700_v2.0.a1 Prupe.5G243900_v2.0.a1
pyrus_communis	pycom05g26570 pycom10g22070
rosa_chinensis	RchiOBHm_Chr3g0477441 RchiOBHm_Chr3g0477451
rosa_laevigata	RLG00000023719 RLG00000023721
rosa_multiflora	Rmu_sc0005234.1_g000012 Rmu_ssc0000341.1_g000014 Rmu_ssc0000341.1_g000016
rosa_roxburghii	Rroxscaffold_6G00404150 Rroxscaffold_6G00404620 Rroxscaffold_6G00404630
rosa_rugosa	Rorug03G0160800 Rorug03G0160900
rosa_samantha	Rh3AG211100 Rh3AG211200 Rh3BG244500 Rh3BG244600 Rh3CG238300 Rh3CG238500 Rh3DG238000
rosa_wichuraiana	Rw3G019130 Rw3G019140

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	71
AccB7I	CCANNNNNTGG	1 cut(s)	211
AccBSI	CCGCTC	1 cut(s)	220
AciI	CCGC	2 cut(s)	220, 386
AclWI	GGATC	3 cut(s)	422, 453, 530
AfiI	CCNNNNNNNGG	1 cut(s)	211
AgsI	TTSAA	3 cut(s)	53, 143, 305
AjiI	CACGTC	1 cut(s)	439
AluBI	AGCT	4 cut(s)	121, 310, 377, 487
AluI	AGCT	4 cut(s)	121, 310, 377, 487
Alw21I	GWGCWC	1 cut(s)	489
Alw26I	GTCTC	1 cut(s)	383
AlwI	GGATC	3 cut(s)	422, 453, 530
AoxI	GGCC	2 cut(s)	237, 396
ApeKI	GCWGC	2 cut(s)	374, 377
ArsI	GACNNNNNNTTYG	2 cut(s)	348, 380
AspS9I	GGNCC	1 cut(s)	396
BanII	GRGCYC	1 cut(s)	489
BbsI	GAAGAC	2 cut(s)	69, 240
Bbv12I	GWGCWC	1 cut(s)	489
BbvI	GCAGC	2 cut(s)	364, 386
BccI	CCATC	1 cut(s)	463
BceAI	ACGGC	3 cut(s)	194, 247, 383
BclI	TGATCA	1 cut(s)	111
BcoDI	GTCTC	1 cut(s)	383
BisI	GCNGC	2 cut(s)	375, 378
BlsI	GCNGC	2 cut(s)	376, 379
BmgBI	CACGTC	1 cut(s)	439
BmgT120I	GGNCC	1 cut(s)	396
BmsI	GCATC	1 cut(s)	400
BpiI	GAAGAC	2 cut(s)	69, 240
BsaBI	GATNNNNATC	1 cut(s)	38
BsaJI	CCNNGG	1 cut(s)	210
Bsc4I	CCNNNNNNNGG	1 cut(s)	211
Bse8I	GATNNNNATC	1 cut(s)	38
BseDI	CCNNGG	1 cut(s)	210
BseGI	GGATG	1 cut(s)	415
BseJI	GATNNNNATC	1 cut(s)	38
BseLI	CCNNNNNNNGG	1 cut(s)	211
BseRI	GAGGAG	1 cut(s)	353
BseXI	GCAGC	2 cut(s)	364, 386
Bsh1285I	CGRYCG	1 cut(s)	272
BshFI	GGCC	2 cut(s)	239, 398
BsiEI	CGRYCG	1 cut(s)	272
BsiHKAI	GWGCWC	1 cut(s)	489
BslI	CCNNNNNNNGG	1 cut(s)	211
BsmAI	GTCTC	1 cut(s)	383
BsmBI	CGTCTC	1 cut(s)	383
BsmI	GAATGC	1 cut(s)	286
BsnI	GGCC	2 cut(s)	239, 398
Bsp1286I	GDGCHC	1 cut(s)	489
Bsp143I	GATC	6 cut(s)	68, 111, 269, 427, 445, 522
BspACI	CCGC	2 cut(s)	220, 386
BspANI	GGCC	2 cut(s)	239, 398
BspPI	GGATC	3 cut(s)	422, 453, 530
BsrBI	CCGCTC	1 cut(s)	220
BssECI	CCNNGG	1 cut(s)	210
BssMI	GATC	6 cut(s)	68, 111, 269, 427, 445, 522
BstC8I	GCNNGC	1 cut(s)	294
BstDEI	CTNAG	1 cut(s)	84
BstDSI	CCRYGG	1 cut(s)	210
BstF5I	GGATG	1 cut(s)	415
BstKTI	GATC	6 cut(s)	71, 114, 272, 430, 448, 525
BstMAI	GTCTC	1 cut(s)	383
BstMBI	GATC	6 cut(s)	68, 111, 269, 427, 445, 522
BstMCI	CGRYCG	1 cut(s)	272
BstMWI	GCNNNNNNNGC	1 cut(s)	383
BstV1I	GCAGC	2 cut(s)	364, 386
BstV2I	GAAGAC	2 cut(s)	69, 240
BstX2I	RGATCY	1 cut(s)	427
BstYI	RGATCY	1 cut(s)	427
BsuRI	GGCC	2 cut(s)	239, 398
BtgI	CCRYGG	1 cut(s)	210
BtrI	CACGTC	1 cut(s)	439
BtsCI	GGATG	1 cut(s)	415
Cac8I	GCNNGC	1 cut(s)	294
Cfr13I	GGNCC	1 cut(s)	396
CseI	GACGC	1 cut(s)	77
CviAII	CATG	1 cut(s)	536
CviJI	RGCY	7 cut(s)	121, 209, 239, 310, 377, 398, 487
CviKI_1	RGCY	7 cut(s)	121, 209, 239, 310, 377, 398, 487
DdeI	CTNAG	1 cut(s)	84
DpnI	GATC	6 cut(s)	70, 113, 271, 429, 447, 524
DpnII	GATC	6 cut(s)	68, 111, 269, 427, 445, 522
DrdI	GACNNNNNNGTC	1 cut(s)	71
DseDI	GACNNNNNNGTC	1 cut(s)	71
EciI	GGCGGA	1 cut(s)	401
Ecl136II	GAGCTC	1 cut(s)	487
Eco147I	AGGCCT	1 cut(s)	239
Eco24I	GRGCYC	1 cut(s)	489
Eco53kI	GAGCTC	1 cut(s)	487
EcoICRI	GAGCTC	1 cut(s)	487
EcoT38I	GRGCYC	1 cut(s)	489
Esp3I	CGTCTC	1 cut(s)	383
FaeI	CATG	1 cut(s)	539
FaiI	YATR	3 cut(s)	110, 181, 537
FatI	CATG	1 cut(s)	535
FbaI	TGATCA	1 cut(s)	111
Fnu4HI	GCNGC	2 cut(s)	375, 378
FokI	GGATG	1 cut(s)	422
FriOI	GRGCYC	1 cut(s)	489
Fsp4HI	GCNGC	2 cut(s)	375, 378
GluI	GCNGC	2 cut(s)	375, 378
HaeIII	GGCC	2 cut(s)	239, 398
HgaI	GACGC	1 cut(s)	77
Hin1II	CATG	1 cut(s)	539
HinfI	GANTC	2 cut(s)	4, 301
Hpy166II	GTNNAC	1 cut(s)	352
Hpy188III	TCNNGA	8 cut(s)	43, 171, 277, 305, 367, 449, 482, 526
Hpy8I	GTNNAC	1 cut(s)	352
Hpy99I	CGWCG	1 cut(s)	247
HpyAV	CCTTC	3 cut(s)	211, 364, 436
HpyCH4IV	ACGT	1 cut(s)	438
HpyCH4V	TGCA	3 cut(s)	265, 315, 380
HpyF10VI	GCNNNNNNNGC	1 cut(s)	383
HpyF3I	CTNAG	1 cut(s)	84
HpySE526I	ACGT	1 cut(s)	438
Hsp92II	CATG	1 cut(s)	539
Ksp22I	TGATCA	1 cut(s)	111
Kzo9I	GATC	6 cut(s)	68, 111, 269, 427, 445, 522
LmnI	GCTCC	1 cut(s)	217
LpnPI	CCDG	1 cut(s)	156
Lsp1109I	GCAGC	2 cut(s)	364, 386
LweI	GCATC	1 cut(s)	400
MaeII	ACGT	1 cut(s)	438
MaeIII	GTNAC	1 cut(s)	73
MalI	GATC	6 cut(s)	70, 113, 271, 429, 447, 524
MbiI	CCGCTC	1 cut(s)	220
MboI	GATC	6 cut(s)	68, 111, 269, 427, 445, 522
MboII	GAAGA	6 cut(s)	74, 240, 243, 310, 472, 475
MflI	RGATCY	1 cut(s)	427
MhlI	GDGCHC	1 cut(s)	489
MluCI	AATT	1 cut(s)	48
MnlI	CCTC	6 cut(s)	229, 250, 331, 387, 499, 524
MseI	TTAA	3 cut(s)	36, 344, 518
MspA1I	CMGCKG	1 cut(s)	377
Mva1269I	GAATGC	1 cut(s)	286
MwoI	GCNNNNNNNGC	1 cut(s)	383
NdeII	GATC	6 cut(s)	68, 111, 269, 427, 445, 522
NlaIII	CATG	1 cut(s)	539
NmuCI	GTSAC	1 cut(s)	73
PceI	AGGCCT	1 cut(s)	239
PctI	GAATGC	1 cut(s)	286
PfeI	GAWTC	2 cut(s)	4, 301
PflFI	GACNNNGTC	1 cut(s)	356
PflMI	CCANNNNNTGG	1 cut(s)	211
PkrI	GCNGC	2 cut(s)	376, 379
Ple19I	CGATCG	1 cut(s)	272
Psp124BI	GAGCTC	1 cut(s)	489
PspPI	GGNCC	1 cut(s)	396
PsuI	RGATCY	1 cut(s)	427
PsyI	GACNNNGTC	1 cut(s)	356
PvuI	CGATCG	1 cut(s)	272
PvuII	CAGCTG	1 cut(s)	377
SacI	GAGCTC	1 cut(s)	489
SaqAI	TTAA	3 cut(s)	36, 344, 518
SatI	GCNGC	2 cut(s)	375, 378
Sau3AI	GATC	6 cut(s)	68, 111, 269, 427, 445, 522
Sau96I	GGNCC	1 cut(s)	396
SduI	GDGCHC	1 cut(s)	489
SetI	ASST	6 cut(s)	123, 312, 351, 379, 441, 489
SfaNI	GCATC	1 cut(s)	400
Sse9I	AATT	1 cut(s)	48
SseBI	AGGCCT	1 cut(s)	239
SsiI	CCGC	2 cut(s)	220, 386
SstI	GAGCTC	1 cut(s)	489
StuI	AGGCCT	1 cut(s)	239
TaiI	ACGT	1 cut(s)	441
TaqII	GACCGA	2 cut(s)	61, 262
TasI	AATT	1 cut(s)	48
TfiI	GAWTC	2 cut(s)	4, 301
Tru1I	TTAA	3 cut(s)	36, 344, 518
Tru9I	TTAA	3 cut(s)	36, 344, 518
TseFI	GTSAC	1 cut(s)	73
TseI	GCWGC	2 cut(s)	374, 377
Tsp45I	GTSAC	1 cut(s)	73
TspDTI	ATGAA	2 cut(s)	17, 243
TspGWI	ACGGA	1 cut(s)	186
Tth111I	GACNNNGTC	1 cut(s)	356
Van91I	CCANNNNNTGG	1 cut(s)	211

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.