Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0003506

Physical Location & Seq

Genomic Coordinates Forward (+)

14629198 .. 14629695

Gene Structure 498 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g21070.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 498 bp

ATGGCAAGCAAGAAGACTAGAGGGAAGCAAAAGATTGAGATAAAGAAAATTGAAAATGCAGAAGATCGCCTTGTGACTTTTACAAAGAGGAAATCTGGCATTTACAATAAGTGCAACGAGCTAGCAGCAACCCTATGCGGTGCAGAGGTTGGTGTCGTGGTGTTCTCTGAATTTGAGAAACCATACTCGTACGGTCATCCTTCCATTGAATCCATAGCTGACCGGTTCTTAAACCAACAATCTCCCCAAGAAACTAACGGTGACAATATCGCCAGTCATGTTGTGGGGGCTTACAAGCAAGCAAGAATCACTGAGATACTCAACAAGTACAATGAGTTACAAGAAAAGCTAAGTAATGAACAACTTCGAGAGAAAGAACTTCAGCAAAGAGAAAAAGCAAGAGCAAGTGAAGGCCTCGGTTGGTGGCAGCGTCCTATTAAGGAGCTAGACTTGGAGGGAACTAAAGAAAATGTATGCTTCCTTCCAGCACCTCCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0008150 GO:0009791 GO:0009888 GO:0009889 GO:0009960 GO:0010154 GO:0010468 GO:0010556 GO:0010817 GO:0019219 GO:0019222 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0032879 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0051049 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0065008 GO:0080090 GO:0140110 GO:1903506 GO:2000012 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04011 ko04111 map04011 map04111

Pfam Domains

Protein Families

SRF-TF

Protein Analysis

166

Amino Acids

18.78

Weight (kDa)

8.36

Isoelectric Point (pI)

52.28

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SRF-TF	PF00319	16 - 64	1.8e-17	SRF-type transcription factor (DNA-binding and dimerisation domain)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003506)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G28450 AT1G28460 AT1G29962 AT1G54760 AT3G04100
fragaria_vesca	FvH4_6g21070
malus_domestica	MD05G1287200.v1.1 MD10G1264600.v1.1 MD13G1257500.v1.1
prunus_persica	Prupe.1G087700_v2.0.a1 Prupe.4G077700_v2.0.a1 Prupe.5G243900_v2.0.a1
pyrus_communis	pycom05g26570 pycom10g22070
rosa_chinensis	RchiOBHm_Chr3g0477441 RchiOBHm_Chr3g0477451
rosa_laevigata	RLG00000023719 RLG00000023721
rosa_multiflora	Rmu_sc0005234.1_g000012 Rmu_ssc0000341.1_g000014 Rmu_ssc0000341.1_g000016
rosa_roxburghii	Rroxscaffold_6G00404150 Rroxscaffold_6G00404620 Rroxscaffold_6G00404630
rosa_rugosa	Rorug03G0160800 Rorug03G0160900
rosa_samantha	Rh3AG211100 Rh3AG211200 Rh3BG244500 Rh3BG244600 Rh3CG238300 Rh3CG238500 Rh3DG238000
rosa_wichuraiana	Rw3G019130 Rw3G019140

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	138
AcsI	RAATTY	1 cut(s)	170
AcuI	CTGAAG	1 cut(s)	365
AfaI	GTAC	2 cut(s)	191, 329
AgeI	ACCGGT	1 cut(s)	222
AgsI	TTSAA	2 cut(s)	53, 209
AluBI	AGCT	4 cut(s)	121, 218, 349, 445
AluI	AGCT	4 cut(s)	121, 218, 349, 445
AoxI	GGCC	1 cut(s)	412
ApeKI	GCWGC	2 cut(s)	125, 427
ApoI	RAATTY	1 cut(s)	170
AsiGI	ACCGGT	1 cut(s)	222
Asp700I	GAANNNNTTC	1 cut(s)	363
AsuHPI	GGTGA	1 cut(s)	272
AsuNHI	GCTAGC	1 cut(s)	121
BarI	GAAGNNNNNNTAC	2 cut(s)	465, 497
BbsI	GAAGAC	1 cut(s)	20
BbvI	GCAGC	2 cut(s)	137, 439
BfaI	CTAG	3 cut(s)	18, 122, 446
BisI	GCNGC	2 cut(s)	126, 428
BlsI	GCNGC	2 cut(s)	127, 429
BmtI	GCTAGC	1 cut(s)	125
BpiI	GAAGAC	1 cut(s)	20
BsaJI	CCNNGG	1 cut(s)	415
BsaWI	WCCGGW	1 cut(s)	222
Bse118I	RCCGGY	1 cut(s)	222
Bse1I	ACTGG	1 cut(s)	273
BseDI	CCNNGG	1 cut(s)	415
BseGI	GGATG	1 cut(s)	196
BseMII	CTCAG	1 cut(s)	303
BseNI	ACTGG	1 cut(s)	273
BseXI	GCAGC	2 cut(s)	137, 439
BsgI	GTGCAG	1 cut(s)	162
BshFI	GGCC	1 cut(s)	414
BshTI	ACCGGT	1 cut(s)	222
BsiSI	CCGG	1 cut(s)	223
BsiWI	CGTACG	1 cut(s)	189
BsnI	GGCC	1 cut(s)	414
Bsp143I	GATC	1 cut(s)	64
BspACI	CCGC	1 cut(s)	138
BspANI	GGCC	1 cut(s)	414
BspCNI	CTCAG	1 cut(s)	304
BspOI	GCTAGC	1 cut(s)	125
BsrFI	RCCGGY	1 cut(s)	222
BsrI	ACTGG	1 cut(s)	273
BssAI	RCCGGY	1 cut(s)	222
BssECI	CCNNGG	1 cut(s)	415
BssMI	GATC	1 cut(s)	64
Bst4CI	ACNGT	2 cut(s)	194, 260
BstC8I	GCNNGC	3 cut(s)	7, 123, 300
BstDEI	CTNAG	2 cut(s)	312, 350
BstF5I	GGATG	1 cut(s)	196
BstKTI	GATC	1 cut(s)	67
BstMBI	GATC	1 cut(s)	64
BstV1I	GCAGC	2 cut(s)	137, 439
BstV2I	GAAGAC	1 cut(s)	20
BsuRI	GGCC	1 cut(s)	414
BtsCI	GGATG	1 cut(s)	196
BtsIMutI	CAGTG	1 cut(s)	309
Cac8I	GCNNGC	3 cut(s)	7, 123, 300
Cfr10I	RCCGGY	1 cut(s)	222
CseI	GACGC	1 cut(s)	419
Csp6I	GTAC	2 cut(s)	190, 328
CspAI	ACCGGT	1 cut(s)	222
CviAII	CATG	1 cut(s)	278
CviJI	RGCY	6 cut(s)	121, 218, 290, 349, 414, 445
CviKI_1	RGCY	6 cut(s)	121, 218, 290, 349, 414, 445
CviQI	GTAC	2 cut(s)	190, 328
DdeI	CTNAG	2 cut(s)	312, 350
DpnI	GATC	1 cut(s)	66
DpnII	GATC	1 cut(s)	64
Eco147I	AGGCCT	1 cut(s)	414
Eco57I	CTGAAG	1 cut(s)	365
FaeI	CATG	1 cut(s)	281
FaiI	YATR	6 cut(s)	136, 184, 215, 279, 475, 496
FalI	AAGNNNNNCTT	2 cut(s)	54, 86
FatI	CATG	1 cut(s)	277
Fnu4HI	GCNGC	2 cut(s)	126, 428
FokI	GGATG	1 cut(s)	183
Fsp4HI	GCNGC	2 cut(s)	126, 428
FspBI	CTAG	3 cut(s)	18, 122, 446
GluI	GCNGC	2 cut(s)	126, 428
HaeIII	GGCC	1 cut(s)	414
HapII	CCGG	1 cut(s)	223
HgaI	GACGC	1 cut(s)	419
Hin1II	CATG	1 cut(s)	281
HinfI	GANTC	2 cut(s)	209, 306
HpaII	CCGG	1 cut(s)	223
HphI	GGTGA	1 cut(s)	272
Hpy188I	TCNGA	1 cut(s)	169
Hpy188III	TCNNGA	1 cut(s)	368
HpyAV	CCTTC	3 cut(s)	210, 404, 491
HpyCH4III	ACNGT	2 cut(s)	194, 260
HpyCH4V	TGCA	3 cut(s)	59, 114, 143
HpyF3I	CTNAG	2 cut(s)	312, 350
Hsp92II	CATG	1 cut(s)	281
Kzo9I	GATC	1 cut(s)	64
LmnI	GCTCC	1 cut(s)	442
LpnPI	CCDG	3 cut(s)	81, 236, 286
Lsp1109I	GCAGC	2 cut(s)	137, 439
MaeI	CTAG	3 cut(s)	18, 122, 446
MaeIII	GTNAC	3 cut(s)	73, 260, 336
MalI	GATC	1 cut(s)	66
MboI	GATC	1 cut(s)	64
MboII	GAAGA	2 cut(s)	25, 74
MluCI	AATT	2 cut(s)	48, 170
MnlI	CCTC	5 cut(s)	14, 81, 139, 425, 448
MroXI	GAANNNNTTC	1 cut(s)	363
MseI	TTAA	2 cut(s)	230, 438
MspI	CCGG	1 cut(s)	223
NdeII	GATC	1 cut(s)	64
NheI	GCTAGC	1 cut(s)	121
NlaIII	CATG	1 cut(s)	281
NmuCI	GTSAC	2 cut(s)	73, 260
PceI	AGGCCT	1 cut(s)	414
PdmI	GAANNNNTTC	1 cut(s)	363
PfeI	GAWTC	2 cut(s)	209, 306
Pfl23II	CGTACG	1 cut(s)	189
PinAI	ACCGGT	1 cut(s)	222
PkrI	GCNGC	2 cut(s)	127, 429
PspLI	CGTACG	1 cut(s)	189
RsaI	GTAC	2 cut(s)	191, 329
RsaNI	GTAC	2 cut(s)	190, 328
SaqAI	TTAA	2 cut(s)	230, 438
SatI	GCNGC	2 cut(s)	126, 428
Sau3AI	GATC	1 cut(s)	64
SetI	ASST	6 cut(s)	123, 150, 220, 351, 447, 493
Sse9I	AATT	2 cut(s)	48, 170
SseBI	AGGCCT	1 cut(s)	414
SsiI	CCGC	1 cut(s)	138
SspMI	CTAG	3 cut(s)	18, 122, 446
StuI	AGGCCT	1 cut(s)	414
TaaI	ACNGT	2 cut(s)	194, 260
TaqI	TCGA	1 cut(s)	367
TasI	AATT	2 cut(s)	48, 170
TatI	WGTACW	1 cut(s)	327
TfiI	GAWTC	2 cut(s)	209, 306
Tru1I	TTAA	2 cut(s)	230, 438
Tru9I	TTAA	2 cut(s)	230, 438
TscAI	CASTG	1 cut(s)	316
TseFI	GTSAC	2 cut(s)	73, 260
TseI	GCWGC	2 cut(s)	125, 427
Tsp45I	GTSAC	2 cut(s)	73, 260
TspDTI	ATGAA	1 cut(s)	372
TspRI	CASTG	1 cut(s)	316
XapI	RAATTY	1 cut(s)	170
XcmI	CCANNNNNNNNNTGG	1 cut(s)	280
XmnI	GAANNNNTTC	1 cut(s)	363
XspI	CTAG	3 cut(s)	18, 122, 446

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.