Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr10

Orthogroup ID

OG0003506

Physical Location & Seq

Genomic Coordinates Reverse (-)

35814642 .. 35815274

Gene Structure 633 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD10G1264600.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 633 bp

ATGATGAAATCACATGAATTCTTACAAAAGATTGAGATGAAGAAGATCGAAAATGAAGAGGCTCTTCTCGTTTCTTTCTCGAAACGAAGGTCCGGCGTTTACAAGAAACCTACCGATATGATAGCACTATCTGGCGGTGAGGTGGGTATTGTGATCTTCTCACCTTCTGGTAAGCCTTTCTCATATGGCCATCCATCTGTCGACTATGTCATCAATCGGTTTATGAACCAAAATTCACCCGAAAACAACGACTACACTCATCAATTCATGAAGACTCATCAACAGATGAAAATTTCCGAGGCCATGGAACAATACAACGAGCTTCTTGACCCATTAGAAGCTGTGAAGGAGCGACAGAAGTCGCTCCTAAGGAAAGCCAGGACAAGGACAACTCAAGAGCACCTGTGGTGGAGTGTACCTATTGAAGAGCTTAGGGTGGATGAGCTCAAACAAATCCATGTATCCATGGCGGAGCTGCACATGACTACCTCCAACCATCTTAAGGAGAGGAGCAGTAGTTCTAATATTTTTGGTGCCTCCTCTTCTGGATCTGTCCAACAAACCAATCCCAACTTTGATGCTGATCAAAGTGGAACTGGTTCTTATGCTTTTCCTTATGGCTACGGCCATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0008150 GO:0009791 GO:0009888 GO:0009889 GO:0009960 GO:0010154 GO:0010468 GO:0010556 GO:0010817 GO:0019219 GO:0019222 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0032879 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0051049 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0065008 GO:0080090 GO:0140110 GO:1903506 GO:2000012 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04011 ko04111 map04011 map04111

Pfam Domains

Protein Families

SRF-TF

Protein Analysis

211

Amino Acids

24.01

Weight (kDa)

6.76

Isoelectric Point (pI)

46.73

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SRF-TF	PF00319	15 - 62	9.9e-14	SRF-type transcription factor (DNA-binding and dimerisation domain)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0003506)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G28450 AT1G28460 AT1G29962 AT1G54760 AT3G04100
fragaria_vesca	FvH4_6g21070
malus_domestica	MD05G1287200.v1.1 MD10G1264600.v1.1 MD13G1257500.v1.1
prunus_persica	Prupe.1G087700_v2.0.a1 Prupe.4G077700_v2.0.a1 Prupe.5G243900_v2.0.a1
pyrus_communis	pycom05g26570 pycom10g22070
rosa_chinensis	RchiOBHm_Chr3g0477441 RchiOBHm_Chr3g0477451
rosa_laevigata	RLG00000023719 RLG00000023721
rosa_multiflora	Rmu_sc0005234.1_g000012 Rmu_ssc0000341.1_g000014 Rmu_ssc0000341.1_g000016
rosa_roxburghii	Rroxscaffold_6G00404150 Rroxscaffold_6G00404620 Rroxscaffold_6G00404630
rosa_rugosa	Rorug03G0160800 Rorug03G0160900
rosa_samantha	Rh3AG211100 Rh3AG211200 Rh3BG244500 Rh3BG244600 Rh3CG238300 Rh3CG238500 Rh3DG238000
rosa_wichuraiana	Rw3G019130 Rw3G019140

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	533
AccI	GTMKAC	1 cut(s)	201
AciI	CCGC	2 cut(s)	135, 470
AclWI	GGATC	1 cut(s)	556
AcoI	YGGCCR	2 cut(s)	187, 625
AcsI	RAATTY	3 cut(s)	17, 232, 291
AfaI	GTAC	1 cut(s)	417
AfiI	CCNNNNNNNGG	2 cut(s)	384, 502
AflII	CTTAAG	1 cut(s)	500
AgsI	TTSAA	1 cut(s)	425
AjnI	CCWGG	1 cut(s)	377
AloI	GAACNNNNNNTCC	2 cut(s)	502, 534
AluBI	AGCT	5 cut(s)	322, 341, 430, 445, 475
AluI	AGCT	5 cut(s)	322, 341, 430, 445, 475
Alw21I	GWGCWC	2 cut(s)	402, 447
AlwI	GGATC	1 cut(s)	556
AoxI	GGCC	3 cut(s)	187, 300, 625
ApeKI	GCWGC	1 cut(s)	475
ApoI	RAATTY	3 cut(s)	17, 232, 291
ArsI	GACNNNNNNTTYG	2 cut(s)	74, 106
Asp700I	GAANNNNTTC	1 cut(s)	598
AspS9I	GGNCC	1 cut(s)	90
AsuHPI	GGTGA	3 cut(s)	149, 153, 228
AvaII	GGWCC	1 cut(s)	90
AxyI	CCTNAGG	1 cut(s)	368
BalI	TGGCCA	1 cut(s)	189
BanI	GGYRCC	1 cut(s)	533
BanII	GRGCYC	1 cut(s)	447
BbsI	GAAGAC	1 cut(s)	278
Bbv12I	GWGCWC	2 cut(s)	402, 447
BbvI	GCAGC	1 cut(s)	462
BccI	CCATC	3 cut(s)	198, 202, 504
BciT130I	CCWGG	1 cut(s)	379
BciVI	GTATCC	1 cut(s)	472
BclI	TGATCA	1 cut(s)	583
BfrI	CTTAAG	1 cut(s)	500
BfuI	GTATCC	1 cut(s)	472
BisI	GCNGC	1 cut(s)	476
BlsI	GCNGC	1 cut(s)	477
Bme1390I	CCNGG	1 cut(s)	379
Bme18I	GGWCC	1 cut(s)	90
BmgT120I	GGNCC	1 cut(s)	90
BmiI	GGNNCC	1 cut(s)	535
BmrFI	CCNGG	1 cut(s)	379
BmsI	GCATC	1 cut(s)	568
BoxI	GACNNNNGTC	1 cut(s)	358
BpiI	GAAGAC	1 cut(s)	278
Bpu10I	CCTNAGC	1 cut(s)	431
BpuEI	CTTGAG	1 cut(s)	378
BsaBI	GATNNNNATC	1 cut(s)	582
BsaJI	CCNNGG	3 cut(s)	297, 303, 465
BsaXI	ACNNNNNCTCC	2 cut(s)	502, 532
Bsc4I	CCNNNNNNNGG	2 cut(s)	384, 502
Bse1I	ACTGG	1 cut(s)	601
Bse21I	CCTNAGG	1 cut(s)	368
Bse8I	GATNNNNATC	1 cut(s)	582
BseBI	CCWGG	1 cut(s)	379
BseDI	CCNNGG	3 cut(s)	297, 303, 465
BseGI	GGATG	2 cut(s)	190, 445
BseJI	GATNNNNATC	1 cut(s)	582
BseLI	CCNNNNNNNGG	2 cut(s)	384, 502
BseNI	ACTGG	1 cut(s)	601
BseRI	GAGGAG	2 cut(s)	523, 529
BseXI	GCAGC	1 cut(s)	462
BsgI	GTGCAG	1 cut(s)	461
BshFI	GGCC	3 cut(s)	189, 302, 627
BshNI	GGYRCC	1 cut(s)	533
BsiHKAI	GWGCWC	2 cut(s)	402, 447
BsiSI	CCGG	1 cut(s)	93
BslI	CCNNNNNNNGG	2 cut(s)	384, 502
BsnI	GGCC	3 cut(s)	189, 302, 627
Bsp1286I	GDGCHC	2 cut(s)	402, 447
Bsp143I	GATC	4 cut(s)	45, 153, 548, 583
Bsp19I	CCATGG	2 cut(s)	303, 465
BspACI	CCGC	2 cut(s)	135, 470
BspANI	GGCC	3 cut(s)	189, 302, 627
BspHI	TCATGA	1 cut(s)	267
BspLI	GGNNCC	1 cut(s)	535
BspPI	GGATC	1 cut(s)	556
BspQI	GCTCTTC	2 cut(s)	69, 420
BspT107I	GGYRCC	1 cut(s)	533
BspTI	CTTAAG	1 cut(s)	500
BsrI	ACTGG	1 cut(s)	601
BssECI	CCNNGG	3 cut(s)	297, 303, 465
BssMI	GATC	4 cut(s)	45, 153, 548, 583
BssT1I	CCWWGG	2 cut(s)	303, 465
Bst2UI	CCWGG	1 cut(s)	379
Bst6I	CTCTTC	4 cut(s)	51, 69, 420, 547
BstAFI	CTTAAG	1 cut(s)	500
BstDEI	CTNAG	2 cut(s)	368, 431
BstDSI	CCRYGG	2 cut(s)	303, 465
BstF5I	GGATG	2 cut(s)	190, 445
BstKTI	GATC	4 cut(s)	48, 156, 551, 586
BstMBI	GATC	4 cut(s)	45, 153, 548, 583
BstNI	CCWGG	1 cut(s)	379
BstPAI	GACNNNNGTC	1 cut(s)	358
BstSCI	CCNGG	1 cut(s)	377
BstV1I	GCAGC	1 cut(s)	462
BstV2I	GAAGAC	1 cut(s)	278
BstX2I	RGATCY	1 cut(s)	548
BstYI	RGATCY	1 cut(s)	548
Bsu36I	CCTNAGG	1 cut(s)	368
BsuI	GTATCC	1 cut(s)	472
BsuRI	GGCC	3 cut(s)	189, 302, 627
BtgI	CCRYGG	2 cut(s)	303, 465
BtsCI	GGATG	2 cut(s)	190, 445
CciI	TCATGA	1 cut(s)	267
Cfr13I	GGNCC	1 cut(s)	90
Csp6I	GTAC	1 cut(s)	416
CviAII	CATG	6 cut(s)	14, 268, 304, 458, 466, 481
CviQI	GTAC	1 cut(s)	416
DdeI	CTNAG	2 cut(s)	368, 431
DpnI	GATC	4 cut(s)	47, 155, 550, 585
DpnII	GATC	4 cut(s)	45, 153, 548, 583
EaeI	YGGCCR	2 cut(s)	187, 625
Eam1104I	CTCTTC	4 cut(s)	51, 69, 420, 547
EarI	CTCTTC	4 cut(s)	51, 69, 420, 547
EciI	GGCGGA	1 cut(s)	485
Ecl136II	GAGCTC	1 cut(s)	445
Eco130I	CCWWGG	2 cut(s)	303, 465
Eco24I	GRGCYC	1 cut(s)	447
Eco47I	GGWCC	1 cut(s)	90
Eco53kI	GAGCTC	1 cut(s)	445
Eco81I	CCTNAGG	1 cut(s)	368
EcoICRI	GAGCTC	1 cut(s)	445
EcoRI	GAATTC	1 cut(s)	17
EcoRII	CCWGG	1 cut(s)	377
EcoT14I	CCWWGG	2 cut(s)	303, 465
EcoT38I	GRGCYC	1 cut(s)	447
ErhI	CCWWGG	2 cut(s)	303, 465
FaeI	CATG	6 cut(s)	17, 271, 307, 461, 469, 484
FalI	AAGNNNNNCTT	2 cut(s)	48, 80
FatI	CATG	6 cut(s)	13, 267, 303, 457, 465, 480
FauNDI	CATATG	1 cut(s)	184
FbaI	TGATCA	1 cut(s)	583
FblI	GTMKAC	1 cut(s)	201
Fnu4HI	GCNGC	1 cut(s)	476
FokI	GGATG	2 cut(s)	177, 452
FriOI	GRGCYC	1 cut(s)	447
Fsp4HI	GCNGC	1 cut(s)	476
GluI	GCNGC	1 cut(s)	476
HaeIII	GGCC	3 cut(s)	189, 302, 627
HapII	CCGG	1 cut(s)	93
Hin1II	CATG	6 cut(s)	17, 271, 307, 461, 469, 484
HincII	GTYRAC	1 cut(s)	202
HindII	GTYRAC	1 cut(s)	202
HinfI	GANTC	1 cut(s)	274
HpaII	CCGG	1 cut(s)	93
HphI	GGTGA	3 cut(s)	149, 153, 228
Hpy166II	GTNNAC	3 cut(s)	100, 202, 416
Hpy188I	TCNGA	1 cut(s)	298
Hpy188III	TCNNGA	5 cut(s)	79, 268, 326, 395, 546
Hpy8I	GTNNAC	3 cut(s)	100, 202, 416
HpyAV	CCTTC	3 cut(s)	81, 174, 340
HpyCH4V	TGCA	1 cut(s)	478
HpyF3I	CTNAG	2 cut(s)	368, 431
Hsp92II	CATG	6 cut(s)	17, 271, 307, 461, 469, 484
Ksp22I	TGATCA	1 cut(s)	583
Kzo9I	GATC	4 cut(s)	45, 153, 548, 583
LguI	GCTCTTC	2 cut(s)	69, 420
LmnI	GCTCC	4 cut(s)	349, 369, 472, 510
LpnPI	CCDG	8 cut(s)	106, 117, 153, 364, 391, 416, 531, 582
Lsp1109I	GCAGC	1 cut(s)	462
LweI	GCATC	1 cut(s)	568
MalI	GATC	4 cut(s)	47, 155, 550, 585
MboI	GATC	4 cut(s)	45, 153, 548, 583
MboII	GAAGA	8 cut(s)	52, 55, 56, 68, 148, 283, 437, 534
MflI	RGATCY	1 cut(s)	548
MhlI	GDGCHC	2 cut(s)	402, 447
MlsI	TGGCCA	1 cut(s)	189
MluCI	AATT	4 cut(s)	17, 232, 263, 291
MluNI	TGGCCA	1 cut(s)	189
MlyI	GAGTC	1 cut(s)	268
MmeI	TCCRAC	2 cut(s)	516, 580
MnlI	CCTC	7 cut(s)	52, 133, 292, 499, 501, 547, 550
Mox20I	TGGCCA	1 cut(s)	189
MroXI	GAANNNNTTC	1 cut(s)	598
MscI	TGGCCA	1 cut(s)	189
MseI	TTAA	2 cut(s)	501, 631
Msp20I	TGGCCA	1 cut(s)	189
MspCI	CTTAAG	1 cut(s)	500
MspI	CCGG	1 cut(s)	93
MspR9I	CCNGG	1 cut(s)	379
MvaI	CCWGG	1 cut(s)	379
NcoI	CCATGG	2 cut(s)	303, 465
NdeI	CATATG	1 cut(s)	184
NdeII	GATC	4 cut(s)	45, 153, 548, 583
NlaIII	CATG	6 cut(s)	17, 271, 307, 461, 469, 484
NlaIV	GGNNCC	1 cut(s)	535
PagI	TCATGA	1 cut(s)	267
PciSI	GCTCTTC	2 cut(s)	69, 420
PdmI	GAANNNNTTC	1 cut(s)	598
PflFI	GACNNNGTC	1 cut(s)	206
PkrI	GCNGC	1 cut(s)	477
PleI	GAGTC	1 cut(s)	268
PpsI	GAGTC	1 cut(s)	268
PshAI	GACNNNNGTC	1 cut(s)	358
Psp124BI	GAGCTC	1 cut(s)	447
Psp6I	CCWGG	1 cut(s)	377
PspGI	CCWGG	1 cut(s)	377
PspN4I	GGNNCC	1 cut(s)	535
PspPI	GGNCC	1 cut(s)	90
PsuI	RGATCY	1 cut(s)	548
PsyI	GACNNNGTC	1 cut(s)	206
RsaI	GTAC	1 cut(s)	417
RsaNI	GTAC	1 cut(s)	416
SacI	GAGCTC	1 cut(s)	447
SalI	GTCGAC	1 cut(s)	200
SapI	GCTCTTC	2 cut(s)	69, 420
SaqAI	TTAA	2 cut(s)	501, 631
SatI	GCNGC	1 cut(s)	476
Sau3AI	GATC	4 cut(s)	45, 153, 548, 583
Sau96I	GGNCC	1 cut(s)	90
SchI	GAGTC	1 cut(s)	268
ScrFI	CCNGG	1 cut(s)	379
SduI	GDGCHC	2 cut(s)	402, 447
SfaNI	GCATC	1 cut(s)	568
SinI	GGWCC	1 cut(s)	90
SmlI	CTYRAG	2 cut(s)	393, 500
SmoI	CTYRAG	2 cut(s)	393, 500
Sse9I	AATT	4 cut(s)	17, 232, 263, 291
SsiI	CCGC	2 cut(s)	135, 470
SspI	AATATT	1 cut(s)	526
SstI	GAGCTC	1 cut(s)	447
StyD4I	CCNGG	1 cut(s)	377
StyI	CCWWGG	2 cut(s)	303, 465
TaqI	TCGA	3 cut(s)	48, 80, 201
TasI	AATT	4 cut(s)	17, 232, 263, 291
Tru1I	TTAA	2 cut(s)	501, 631
Tru9I	TTAA	2 cut(s)	501, 631
TseI	GCWGC	1 cut(s)	475
TspDTI	ATGAA	8 cut(s)	20, 30, 53, 69, 239, 256, 284, 302
Tth111I	GACNNNGTC	1 cut(s)	206
Vha464I	CTTAAG	1 cut(s)	500
VpaK11BI	GGWCC	1 cut(s)	90
XapI	RAATTY	3 cut(s)	17, 232, 291
XmiI	GTMKAC	1 cut(s)	201
XmnI	GAANNNNTTC	1 cut(s)	598

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.