AT1G29962
MADS Family

Agamous-like MADS-box protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0003506
Physical Location & Seq
Forward (+)
10496730 .. 10497287
558 bp
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UTR
Exon/CDS
Intron
AT1G29962.1

Sequence Viewer

Length: 558 bp
ATGAAACCCAAGAAAACCAAAGGAAAACAAAGGATTAACATCAAGAAAATTGAAAAAGACGAAGACAGATTGGTCACATTGTCTAAGCGTCGAAATGGTATCTACACTAAACTCAGTGAGCTTTCCATTCTCTGTGGTGCTGAAGTTGCGTTTCTCGGGTATTCTTGCTCTGGAAAACCATACACATTCGGCAGTCCGTCCTTCCAAGCCGTGGCAGAGCGGTTTCTCAACGGCGAGGCCTCGTCGTCTTCTTCATCATCGTTGCAACGATCGGTCATGAATGCTCATCAGCAAGCGAAGATTCAAGAGCTTTGCAAAGTATACAATAGATTGGTGGAGGAGATAACGGTGGAAGAAGTCAAATTAAAGAAGACGGCTGCATTGGCGGAGATGATGCCCATGAATGAGGATGCGTGGTGGAAAGTGGATCCAAATGACGTGAAGGATCGCGAAGAGGTGAAGAAGATGATGGAGAAGCATCAAGAGCTCTATGAGAAACTGTGCGAGGAAGCTGCTTCAAGGATCAAGAGAGGACATGATGAGAATAATAACAAATGA

Protein Analysis

185

Amino Acids

21.18

Weight (kDa)

9.05

Isoelectric Point (pI)

45.21

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SRF-TF PF00319 16 - 63 2e-19 SRF-type transcription factor (DNA-binding and dimerisation domain)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 71
AccB7I CCANNNNNTGG 1 cut(s) 211
AccBSI CCGCTC 1 cut(s) 220
AccI GTMKAC 1 cut(s) 321
AccII CGCG 1 cut(s) 450
AciI CCGC 2 cut(s) 220, 386
AclWI GGATC 4 cut(s) 422, 435, 453, 530
AcuI CTGAAG 1 cut(s) 162
AfiI CCNNNNNNNGG 1 cut(s) 211
AgsI TTSAA 3 cut(s) 53, 305, 519
AjiI CACGTC 1 cut(s) 439
AluBI AGCT 4 cut(s) 121, 310, 487, 512
AluI AGCT 4 cut(s) 121, 310, 487, 512
Alw21I GWGCWC 1 cut(s) 489
AlwI GGATC 4 cut(s) 422, 435, 453, 530
Ama87I CYCGRG 1 cut(s) 155
AoxI GGCC 1 cut(s) 237
ApeKI GCWGC 2 cut(s) 377, 512
AsuHPI GGTGA 1 cut(s) 469
AvaI CYCGRG 1 cut(s) 155
BamHI GGATCC 1 cut(s) 427
BanII GRGCYC 1 cut(s) 489
BbsI GAAGAC 3 cut(s) 69, 240, 377
Bbv12I GWGCWC 1 cut(s) 489
BbvI GCAGC 2 cut(s) 364, 499
BccI CCATC 1 cut(s) 463
BceAI ACGGC 3 cut(s) 194, 247, 390
BcgI CGANNNNNNTGC 2 cut(s) 494, 528
BisI GCNGC 2 cut(s) 378, 513
BlsI GCNGC 2 cut(s) 379, 514
BmeT110I CYCGRG 1 cut(s) 155
BmgBI CACGTC 1 cut(s) 439
BmiI GGNNCC 1 cut(s) 429
BmsI GCATC 3 cut(s) 384, 400, 487
BpiI GAAGAC 3 cut(s) 69, 240, 377
BsaBI GATNNNNATC 1 cut(s) 38
BsaJI CCNNGG 1 cut(s) 210
Bsc4I CCNNNNNNNGG 1 cut(s) 211
Bse8I GATNNNNATC 1 cut(s) 38
BseDI CCNNGG 1 cut(s) 210
BseGI GGATG 1 cut(s) 415
BseJI GATNNNNATC 1 cut(s) 38
BseLI CCNNNNNNNGG 1 cut(s) 211
BseMII CTCAG 1 cut(s) 127
BseRI GAGGAG 1 cut(s) 353
BseXI GCAGC 2 cut(s) 364, 499
Bsh1236I CGCG 1 cut(s) 450
Bsh1285I CGRYCG 1 cut(s) 272
BshFI GGCC 1 cut(s) 239
BsiEI CGRYCG 1 cut(s) 272
BsiHKAI GWGCWC 1 cut(s) 489
BsiHKCI CYCGRG 1 cut(s) 155
BslI CCNNNNNNNGG 1 cut(s) 211
BsmI GAATGC 1 cut(s) 286
BsnI GGCC 1 cut(s) 239
BsoBI CYCGRG 1 cut(s) 155
Bsp1286I GDGCHC 1 cut(s) 489
Bsp143I GATC 4 cut(s) 269, 427, 445, 522
Bsp68I TCGCGA 1 cut(s) 450
BspACI CCGC 2 cut(s) 220, 386
BspANI GGCC 1 cut(s) 239
BspCNI CTCAG 1 cut(s) 126
BspFNI CGCG 1 cut(s) 450
BspHI TCATGA 1 cut(s) 276
BspLI GGNNCC 1 cut(s) 429
BspPI GGATC 4 cut(s) 422, 435, 453, 530
BsrBI CCGCTC 1 cut(s) 220
BssECI CCNNGG 1 cut(s) 210
BssMI GATC 4 cut(s) 269, 427, 445, 522
BssNAI GTATAC 1 cut(s) 322
Bst1107I GTATAC 1 cut(s) 322
Bst4CI ACNGT 2 cut(s) 349, 501
Bst6I CTCTTC 1 cut(s) 447
BstC8I GCNNGC 1 cut(s) 294
BstDEI CTNAG 2 cut(s) 84, 113
BstDSI CCRYGG 1 cut(s) 210
BstF5I GGATG 1 cut(s) 415
BstFNI CGCG 1 cut(s) 450
BstKTI GATC 4 cut(s) 272, 430, 448, 525
BstMBI GATC 4 cut(s) 269, 427, 445, 522
BstMCI CGRYCG 1 cut(s) 272
BstMWI GCNNNNNNNGC 3 cut(s) 146, 383, 484
BstUI CGCG 1 cut(s) 450
BstV1I GCAGC 2 cut(s) 364, 499
BstV2I GAAGAC 3 cut(s) 69, 240, 377
BstX2I RGATCY 1 cut(s) 427
BstYI RGATCY 1 cut(s) 427
BstZ17I GTATAC 1 cut(s) 322
BsuRI GGCC 1 cut(s) 239
BtgI CCRYGG 1 cut(s) 210
BtrI CACGTC 1 cut(s) 439
BtsCI GGATG 1 cut(s) 415
BtsIMutI CAGTG 1 cut(s) 121
BtuMI TCGCGA 1 cut(s) 450
Cac8I GCNNGC 1 cut(s) 294
CciI TCATGA 1 cut(s) 276
CseI GACGC 1 cut(s) 77
CviAII CATG 3 cut(s) 277, 400, 536
CviJI RGCY 7 cut(s) 121, 209, 239, 310, 377, 487, 512
CviKI_1 RGCY 7 cut(s) 121, 209, 239, 310, 377, 487, 512
DdeI CTNAG 2 cut(s) 84, 113
DpnI GATC 4 cut(s) 271, 429, 447, 524
DpnII GATC 4 cut(s) 269, 427, 445, 522
DrdI GACNNNNNNGTC 1 cut(s) 71
DseDI GACNNNNNNGTC 1 cut(s) 71
Eam1104I CTCTTC 1 cut(s) 447
EarI CTCTTC 1 cut(s) 447
EciI GGCGGA 1 cut(s) 401
Ecl136II GAGCTC 1 cut(s) 487
Eco147I AGGCCT 1 cut(s) 239
Eco24I GRGCYC 1 cut(s) 489
Eco53kI GAGCTC 1 cut(s) 487
Eco57I CTGAAG 1 cut(s) 162
Eco88I CYCGRG 1 cut(s) 155
EcoICRI GAGCTC 1 cut(s) 487
EcoT38I GRGCYC 1 cut(s) 489
FaeI CATG 3 cut(s) 280, 403, 539
FaiI YATR 6 cut(s) 181, 278, 322, 401, 492, 537
FatI CATG 3 cut(s) 276, 399, 535
FblI GTMKAC 1 cut(s) 321
Fnu4HI GCNGC 2 cut(s) 378, 513
FokI GGATG 1 cut(s) 422
FriOI GRGCYC 1 cut(s) 489
Fsp4HI GCNGC 2 cut(s) 378, 513
GluI GCNGC 2 cut(s) 378, 513
HaeIII GGCC 1 cut(s) 239
HgaI GACGC 1 cut(s) 77
Hin1II CATG 3 cut(s) 280, 403, 539
HinfI GANTC 1 cut(s) 301
HphI GGTGA 1 cut(s) 469
Hpy166II GTNNAC 1 cut(s) 322
Hpy188III TCNNGA 7 cut(s) 43, 171, 277, 305, 449, 482, 526
Hpy8I GTNNAC 1 cut(s) 322
Hpy99I CGWCG 2 cut(s) 93, 247
HpyAV CCTTC 2 cut(s) 211, 436
HpyCH4III ACNGT 2 cut(s) 349, 501
HpyCH4IV ACGT 1 cut(s) 438
HpyCH4V TGCA 3 cut(s) 265, 315, 380
HpyF10VI GCNNNNNNNGC 3 cut(s) 146, 383, 484
HpyF3I CTNAG 2 cut(s) 84, 113
HpySE526I ACGT 1 cut(s) 438
Hsp92II CATG 3 cut(s) 280, 403, 539
Kzo9I GATC 4 cut(s) 269, 427, 445, 522
LpnPI CCDG 1 cut(s) 156
Lsp1109I GCAGC 2 cut(s) 364, 499
LweI GCATC 3 cut(s) 384, 400, 487
MaeII ACGT 1 cut(s) 438
MaeIII GTNAC 1 cut(s) 73
MalI GATC 4 cut(s) 271, 429, 447, 524
MbiI CCGCTC 1 cut(s) 220
MboI GATC 4 cut(s) 269, 427, 445, 522
MboII GAAGA 9 cut(s) 74, 240, 243, 310, 365, 382, 464, 472, 475
MflI RGATCY 1 cut(s) 427
MhlI GDGCHC 1 cut(s) 489
MluCI AATT 2 cut(s) 48, 362
MnlI CCTC 7 cut(s) 229, 250, 331, 400, 448, 499, 524
MseI TTAA 2 cut(s) 36, 365
Mva1269I GAATGC 1 cut(s) 286
MvnI CGCG 1 cut(s) 450
MwoI GCNNNNNNNGC 3 cut(s) 146, 383, 484
NdeII GATC 4 cut(s) 269, 427, 445, 522
NlaIII CATG 3 cut(s) 280, 403, 539
NlaIV GGNNCC 1 cut(s) 429
NmuCI GTSAC 1 cut(s) 73
NruI TCGCGA 1 cut(s) 450
PagI TCATGA 1 cut(s) 276
PceI AGGCCT 1 cut(s) 239
PctI GAATGC 1 cut(s) 286
PfeI GAWTC 1 cut(s) 301
PflMI CCANNNNNTGG 1 cut(s) 211
PkrI GCNGC 2 cut(s) 379, 514
Ple19I CGATCG 1 cut(s) 272
Psp124BI GAGCTC 1 cut(s) 489
PspN4I GGNNCC 1 cut(s) 429
PsuI RGATCY 1 cut(s) 427
PvuI CGATCG 1 cut(s) 272
RruI TCGCGA 1 cut(s) 450
SacI GAGCTC 1 cut(s) 489
SaqAI TTAA 2 cut(s) 36, 365
SatI GCNGC 2 cut(s) 378, 513
Sau3AI GATC 4 cut(s) 269, 427, 445, 522
SduI GDGCHC 1 cut(s) 489
SetI ASST 6 cut(s) 123, 312, 441, 459, 489, 514
SfaNI GCATC 3 cut(s) 384, 400, 487
Sse9I AATT 2 cut(s) 48, 362
SseBI AGGCCT 1 cut(s) 239
SsiI CCGC 2 cut(s) 220, 386
SstI GAGCTC 1 cut(s) 489
StuI AGGCCT 1 cut(s) 239
TaaI ACNGT 2 cut(s) 349, 501
TaiI ACGT 1 cut(s) 441
TaqI TCGA 1 cut(s) 91
TaqII GACCGA 1 cut(s) 262
TasI AATT 2 cut(s) 48, 362
TfiI GAWTC 1 cut(s) 301
Tru1I TTAA 2 cut(s) 36, 365
Tru9I TTAA 2 cut(s) 36, 365
TscAI CASTG 1 cut(s) 121
TseFI GTSAC 1 cut(s) 73
TseI GCWGC 2 cut(s) 377, 512
Tsp45I GTSAC 1 cut(s) 73
TspDTI ATGAA 4 cut(s) 17, 243, 293, 416
TspGWI ACGGA 1 cut(s) 186
TspRI CASTG 1 cut(s) 121
Van91I CCANNNNNTGG 1 cut(s) 211
XmiI GTMKAC 1 cut(s) 321
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.