Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr5

Orthogroup ID

OG0003506

Physical Location & Seq

Genomic Coordinates Reverse (-)

27449441 .. 27450129

Gene Structure 689 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000023721

Sequence Viewer

CDS Protein Promoter (2k)

Length: 543 bp

ATGGAAGGCAGGAAGACCAGAGGACGCCAGAAGATTGAAATAAAGAAAGTTGAAAATGCAGACGATCGCCATGTCACTTTTTCAAAGAGGAGATCTGGCGTTTACAAAAAGTGCAACGAGCTAGCTACCCTATGCGGTGCAGAGGTTGGTGTCGTGGTGTTCTCCGAATCTGAGAAACCATTCTCGTATGGTAACCCATCTATCGAATCCATAGCTGACCGATTCTTAAACGTCCAGCCTCCTCAAGCAAATAGCGATGACAGGATCGCTGATTCTCTTGTGGAAGCATACAAGCATGCAAGATACATGGAGATACTGAACAAGCACAATGAGTTAGAGGACAAGCTCAGGGATGAACAGCTTCGAGAGAAAGTACTTCTGCAGAGAGAAAGAGCAAGAGCAAGTGCAGAGCAAGGAGGCCTCGGCTGGTGGCAGCGTCCTATTAAGGAGCTAGACTCGGAGGAACTAAAACAAATTTTCCTTTCTTCTTCCGGCTTGGGCGCTGGGACGATATACAGAAGAGGTAAAGGGGTAGAGAACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0008150 GO:0009791 GO:0009888 GO:0009889 GO:0009960 GO:0010154 GO:0010468 GO:0010556 GO:0010817 GO:0019219 GO:0019222 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0032879 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0051049 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0065008 GO:0080090 GO:0140110 GO:1903506 GO:2000012 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04011 ko04111 map04011 map04111

Pfam Domains

Protein Families

SRF-TF

Protein Analysis

181

Amino Acids

20.52

Weight (kDa)

8.81

Isoelectric Point (pI)

50.27

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SRF-TF	PF00319	16 - 63	9.4e-22	SRF-type transcription factor (DNA-binding and dimerisation domain)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0003506)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G28450 AT1G28460 AT1G29962 AT1G54760 AT3G04100
fragaria_vesca	FvH4_6g21070
malus_domestica	MD05G1287200.v1.1 MD10G1264600.v1.1 MD13G1257500.v1.1
prunus_persica	Prupe.1G087700_v2.0.a1 Prupe.4G077700_v2.0.a1 Prupe.5G243900_v2.0.a1
pyrus_communis	pycom05g26570 pycom10g22070
rosa_chinensis	RchiOBHm_Chr3g0477441 RchiOBHm_Chr3g0477451
rosa_laevigata	RLG00000023719 RLG00000023721
rosa_multiflora	Rmu_sc0005234.1_g000012 Rmu_ssc0000341.1_g000014 Rmu_ssc0000341.1_g000016
rosa_roxburghii	Rroxscaffold_6G00404150 Rroxscaffold_6G00404620 Rroxscaffold_6G00404630
rosa_rugosa	Rorug03G0160800 Rorug03G0160900
rosa_samantha	Rh3AG211100 Rh3AG211200 Rh3BG244500 Rh3BG244600 Rh3CG238300 Rh3CG238500 Rh3DG238000
rosa_wichuraiana	Rw3G019130 Rw3G019140

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	135
AclWI	GGATC	1 cut(s)	272
AcsI	RAATTY	1 cut(s)	474
AcyI	GRCGYC	1 cut(s)	25
AfaI	GTAC	1 cut(s)	375
AgsI	TTSAA	3 cut(s)	38, 53, 84
AluBI	AGCT	6 cut(s)	121, 125, 215, 346, 361, 451
AluI	AGCT	6 cut(s)	121, 125, 215, 346, 361, 451
AlwI	GGATC	1 cut(s)	272
AoxI	GGCC	1 cut(s)	418
ApeKI	GCWGC	1 cut(s)	433
ApoI	RAATTY	1 cut(s)	474
Asp700I	GAANNNNTTC	2 cut(s)	179, 360
AspLEI	GCGC	1 cut(s)	503
AsuNHI	GCTAGC	1 cut(s)	121
BbsI	GAAGAC	1 cut(s)	20
BbvI	GCAGC	1 cut(s)	445
BccI	CCATC	1 cut(s)	205
BfaI	CTAG	3 cut(s)	122, 452, 541
BfmI	CTRYAG	1 cut(s)	380
BfoI	RGCGCY	1 cut(s)	504
BglII	AGATCT	1 cut(s)	92
BisI	GCNGC	1 cut(s)	434
BlsI	GCNGC	1 cut(s)	435
BmcAI	AGTACT	1 cut(s)	375
BmtI	GCTAGC	1 cut(s)	125
BpiI	GAAGAC	1 cut(s)	20
BplI	GAGNNNNNCTC	2 cut(s)	440, 472
Bpu10I	CCTNAGC	1 cut(s)	347
BpuEI	CTTGAG	1 cut(s)	228
BsaHI	GRCGYC	1 cut(s)	25
BsaJI	CCNNGG	1 cut(s)	421
BseDI	CCNNGG	1 cut(s)	421
BseGI	GGATG	1 cut(s)	358
BseMII	CTCAG	2 cut(s)	162, 361
BseRI	GAGGAG	2 cut(s)	103, 231
BseXI	GCAGC	1 cut(s)	445
BseYI	CCCAGC	1 cut(s)	503
BsgI	GTGCAG	2 cut(s)	159, 426
Bsh1285I	CGRYCG	1 cut(s)	67
BshFI	GGCC	1 cut(s)	420
BsiEI	CGRYCG	1 cut(s)	67
BsiSI	CCGG	1 cut(s)	492
BslFI	GGGAC	1 cut(s)	520
BsmFI	GGGAC	1 cut(s)	520
BsnI	GGCC	1 cut(s)	420
Bsp143I	GATC	3 cut(s)	64, 92, 264
BspACI	CCGC	1 cut(s)	135
BspANI	GGCC	1 cut(s)	420
BspCNI	CTCAG	2 cut(s)	163, 360
BspMAI	CTGCAG	1 cut(s)	384
BspOI	GCTAGC	1 cut(s)	125
BspPI	GGATC	1 cut(s)	272
BssECI	CCNNGG	1 cut(s)	421
BssMI	GATC	3 cut(s)	64, 92, 264
BssNI	GRCGYC	1 cut(s)	25
Bst6I	CTCTTC	1 cut(s)	514
BstACI	GRCGYC	1 cut(s)	25
BstC8I	GCNNGC	2 cut(s)	123, 297
BstDEI	CTNAG	2 cut(s)	171, 347
BstEII	GGTNACC	1 cut(s)	191
BstF5I	GGATG	1 cut(s)	358
BstH2I	RGCGCY	1 cut(s)	504
BstHHI	GCGC	1 cut(s)	503
BstKTI	GATC	3 cut(s)	67, 95, 267
BstMBI	GATC	3 cut(s)	64, 92, 264
BstMCI	CGRYCG	1 cut(s)	67
BstNSI	RCATGY	1 cut(s)	299
BstPI	GGTNACC	1 cut(s)	191
BstSFI	CTRYAG	1 cut(s)	380
BstV1I	GCAGC	1 cut(s)	445
BstV2I	GAAGAC	1 cut(s)	20
BstX2I	RGATCY	1 cut(s)	92
BstYI	RGATCY	1 cut(s)	92
BsuRI	GGCC	1 cut(s)	420
BtgZI	GCGATG	1 cut(s)	270
BtsCI	GGATG	1 cut(s)	358
Cac8I	GCNNGC	2 cut(s)	123, 297
CfoI	GCGC	1 cut(s)	503
CseI	GACGC	2 cut(s)	33, 425
Csp6I	GTAC	1 cut(s)	374
CviAII	CATG	3 cut(s)	71, 296, 307
CviQI	GTAC	1 cut(s)	374
DdeI	CTNAG	2 cut(s)	171, 347
DpnI	GATC	3 cut(s)	66, 94, 266
DpnII	GATC	3 cut(s)	64, 92, 264
Eam1104I	CTCTTC	1 cut(s)	514
EarI	CTCTTC	1 cut(s)	514
Eco147I	AGGCCT	1 cut(s)	420
Eco91I	GGTNACC	1 cut(s)	191
EcoO65I	GGTNACC	1 cut(s)	191
FaeI	CATG	3 cut(s)	74, 299, 310
FaiI	YATR	8 cut(s)	72, 133, 189, 212, 289, 297, 308, 514
FaqI	GGGAC	1 cut(s)	520
FatI	CATG	3 cut(s)	70, 295, 306
Fnu4HI	GCNGC	1 cut(s)	434
FokI	GGATG	1 cut(s)	365
Fsp4HI	GCNGC	1 cut(s)	434
FspBI	CTAG	3 cut(s)	122, 452, 541
GlaI	GCGC	1 cut(s)	502
GluI	GCNGC	1 cut(s)	434
GsaI	CCCAGC	1 cut(s)	507
HaeII	RGCGCY	1 cut(s)	504
HaeIII	GGCC	1 cut(s)	420
HapII	CCGG	1 cut(s)	492
HgaI	GACGC	2 cut(s)	33, 425
HhaI	GCGC	1 cut(s)	503
Hin1I	GRCGYC	1 cut(s)	25
Hin1II	CATG	3 cut(s)	74, 299, 310
Hin6I	GCGC	1 cut(s)	501
HinP1I	GCGC	1 cut(s)	501
HinfI	GANTC	5 cut(s)	167, 206, 222, 272, 455
HpaII	CCGG	1 cut(s)	492
Hpy166II	GTNNAC	1 cut(s)	103
Hpy188I	TCNGA	3 cut(s)	166, 172, 460
Hpy188III	TCNNGA	1 cut(s)	365
Hpy8I	GTNNAC	1 cut(s)	103
HpyCH4IV	ACGT	1 cut(s)	231
HpyCH4V	TGCA	6 cut(s)	59, 114, 140, 299, 382, 407
HpyF3I	CTNAG	2 cut(s)	171, 347
HpySE526I	ACGT	1 cut(s)	231
Hsp92I	GRCGYC	1 cut(s)	25
Hsp92II	CATG	3 cut(s)	74, 299, 310
HspAI	GCGC	1 cut(s)	501
Kzo9I	GATC	3 cut(s)	64, 92, 264
LmnI	GCTCC	1 cut(s)	448
LpnPI	CCDG	9 cut(s)	31, 41, 81, 247, 248, 334, 412, 489, 505
Lsp1109I	GCAGC	1 cut(s)	445
MaeI	CTAG	3 cut(s)	122, 452, 541
MaeII	ACGT	1 cut(s)	231
MaeIII	GTNAC	2 cut(s)	73, 191
MalI	GATC	3 cut(s)	66, 94, 266
MboI	GATC	3 cut(s)	64, 92, 264
MboII	GAAGA	5 cut(s)	25, 43, 477, 480, 531
MflI	RGATCY	1 cut(s)	92
MluCI	AATT	1 cut(s)	474
MlyI	GAGTC	1 cut(s)	449
MroXI	GAANNNNTTC	2 cut(s)	179, 360
MseI	TTAA	2 cut(s)	227, 444
MspI	CCGG	1 cut(s)	492
NdeII	GATC	3 cut(s)	64, 92, 264
NheI	GCTAGC	1 cut(s)	121
NlaIII	CATG	3 cut(s)	74, 299, 310
NmeAIII	GCCGAG	1 cut(s)	402
NmuCI	GTSAC	1 cut(s)	73
NspI	RCATGY	1 cut(s)	299
PaeI	GCATGC	1 cut(s)	299
PceI	AGGCCT	1 cut(s)	420
PdmI	GAANNNNTTC	2 cut(s)	179, 360
PfeI	GAWTC	4 cut(s)	167, 206, 222, 272
PkrI	GCNGC	1 cut(s)	435
Ple19I	CGATCG	1 cut(s)	67
PleI	GAGTC	1 cut(s)	449
PpsI	GAGTC	1 cut(s)	449
PspEI	GGTNACC	1 cut(s)	191
PspFI	CCCAGC	1 cut(s)	503
PstI	CTGCAG	1 cut(s)	384
PsuI	RGATCY	1 cut(s)	92
PvuI	CGATCG	1 cut(s)	67
RsaI	GTAC	1 cut(s)	375
RsaNI	GTAC	1 cut(s)	374
SaqAI	TTAA	2 cut(s)	227, 444
SatI	GCNGC	1 cut(s)	434
Sau3AI	GATC	3 cut(s)	64, 92, 264
ScaI	AGTACT	1 cut(s)	375
SchI	GAGTC	1 cut(s)	449
SetI	ASST	9 cut(s)	123, 127, 147, 217, 234, 348, 363, 453, 526
SfcI	CTRYAG	1 cut(s)	380
SmlI	CTYRAG	1 cut(s)	243
SmoI	CTYRAG	1 cut(s)	243
SphI	GCATGC	1 cut(s)	299
Sse9I	AATT	1 cut(s)	474
SseBI	AGGCCT	1 cut(s)	420
SsiI	CCGC	1 cut(s)	135
SspMI	CTAG	3 cut(s)	122, 452, 541
StuI	AGGCCT	1 cut(s)	420
TaiI	ACGT	1 cut(s)	234
TaqI	TCGA	2 cut(s)	204, 364
TaqII	GACCGA	1 cut(s)	234
TasI	AATT	1 cut(s)	474
TatI	WGTACW	1 cut(s)	373
TfiI	GAWTC	4 cut(s)	167, 206, 222, 272
Tru1I	TTAA	2 cut(s)	227, 444
Tru9I	TTAA	2 cut(s)	227, 444
TseFI	GTSAC	1 cut(s)	73
TseI	GCWGC	1 cut(s)	433
Tsp45I	GTSAC	1 cut(s)	73
TspDTI	ATGAA	1 cut(s)	369
XapI	RAATTY	1 cut(s)	474
XceI	RCATGY	1 cut(s)	299
XmnI	GAANNNNTTC	2 cut(s)	179, 360
XspI	CTAG	3 cut(s)	122, 452, 541
ZrmI	AGTACT	1 cut(s)	375

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.