Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0003506

Physical Location & Seq

Genomic Coordinates Forward (+)

1075299 .. 1075922

Gene Structure 624 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G04100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 624 bp

ATGTCATCTACGAAGCAAGCAAAGGGAAGAAAAACAAAGGGGAAGCAAAAGATCGAGATGAAGAAGGTGGAGAACTATGGAGATAGGATGATTACGTTCTCAAAACGTAAAACCGGAATTTTTAAGAAAATGAACGAGCTCGTAGCAATGTGTGACGTTGAAGTGGCTTTCTTGATTTTCTCTCAACCCAAGAAGCCCTATACATTCGCACATCCGTCTATGAAGAAAGTGGCTGACCGGTTAAAGAACCCTTCGAGACAAGAACCATTAGAGAGAGACGATACCAGACCCCTCGTCGAAGCTTATAAGAAACGAAGGCTCCACGACCTCGTAAAAAAAATGGAGGCGCTCGAAGAGGAGCTTGCGATGGATCTAGAGAAGTTGAAACTGTTGAAGGAATCGAGAAATGAAAAGAAGTTAGATAAAATGTGGTGGAACTTTCCTTCGGAAGGTTTGAGCGCGAAGGAGCTGCAGCAAAGGTACCAAGCGATGCTCGAGTTACGTGATAACTTATGCGACAATATGGCTCACTTACGATTGGGAAAAGACTGTGGTGGTTCATCTTCTGTTCGTGTGGGACGTCGAGTTTCTGGTGGTGTTCGTCTGTTCGATCGTGAAGCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0008150 GO:0009791 GO:0009888 GO:0009889 GO:0009960 GO:0010154 GO:0010468 GO:0010556 GO:0010817 GO:0019219 GO:0019222 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0032879 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0051049 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0065008 GO:0080090 GO:0140110 GO:1903506 GO:2000012 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SRF-TF

Protein Analysis

207

Amino Acids

24.1

Weight (kDa)

9.83

Isoelectric Point (pI)

46.41

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SRF-TF	PF00319	22 - 69	2.5e-19	SRF-type transcription factor (DNA-binding and dimerisation domain)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003506)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G28450 AT1G28460 AT1G29962 AT1G54760 AT3G04100
fragaria_vesca	FvH4_6g21070
malus_domestica	MD05G1287200.v1.1 MD10G1264600.v1.1 MD13G1257500.v1.1
prunus_persica	Prupe.1G087700_v2.0.a1 Prupe.4G077700_v2.0.a1 Prupe.5G243900_v2.0.a1
pyrus_communis	pycom05g26570 pycom10g22070
rosa_chinensis	RchiOBHm_Chr3g0477441 RchiOBHm_Chr3g0477451
rosa_laevigata	RLG00000023719 RLG00000023721
rosa_multiflora	Rmu_sc0005234.1_g000012 Rmu_ssc0000341.1_g000014 Rmu_ssc0000341.1_g000016
rosa_roxburghii	Rroxscaffold_6G00404150 Rroxscaffold_6G00404620 Rroxscaffold_6G00404630
rosa_rugosa	Rorug03G0160800 Rorug03G0160900
rosa_samantha	Rh3AG211100 Rh3AG211200 Rh3BG244500 Rh3BG244600 Rh3CG238300 Rh3CG238500 Rh3DG238000
rosa_wichuraiana	Rw3G019130 Rw3G019140

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	306
AatII	GACGTC	1 cut(s)	583
Acc65I	GGTACC	1 cut(s)	480
AccB1I	GGYRCC	1 cut(s)	480
AccII	CGCG	1 cut(s)	461
AclWI	GGATC	1 cut(s)	378
AcsI	RAATTY	1 cut(s)	117
AcyI	GRCGYC	1 cut(s)	580
AfaI	GTAC	1 cut(s)	482
AfiI	CCNNNNNNNGG	1 cut(s)	449
AgeI	ACCGGT	1 cut(s)	237
AgsI	TTSAA	3 cut(s)	161, 385, 394
AhdI	GACNNNNNGTC	1 cut(s)	293
AluBI	AGCT	4 cut(s)	139, 302, 361, 469
AluI	AGCT	4 cut(s)	139, 302, 361, 469
Alw21I	GWGCWC	1 cut(s)	141
Alw26I	GTCTC	2 cut(s)	250, 270
AlwI	GGATC	1 cut(s)	378
Ama87I	CYCGRG	1 cut(s)	494
ApeKI	GCWGC	2 cut(s)	469, 472
ApoI	RAATTY	1 cut(s)	117
AsiGI	ACCGGT	1 cut(s)	237
Asp718I	GGTACC	1 cut(s)	480
AspLEI	GCGC	2 cut(s)	349, 461
AvaI	CYCGRG	1 cut(s)	494
BanI	GGYRCC	1 cut(s)	480
BanII	GRGCYC	1 cut(s)	141
Bbv12I	GWGCWC	1 cut(s)	141
BbvI	GCAGC	2 cut(s)	456, 484
BccI	CCATC	1 cut(s)	361
BcgI	CGANNNNNNTGC	2 cut(s)	451, 485
BcoDI	GTCTC	2 cut(s)	250, 270
BfaI	CTAG	1 cut(s)	374
BfmI	CTRYAG	1 cut(s)	470
BfoI	RGCGCY	1 cut(s)	350
BisI	GCNGC	2 cut(s)	470, 473
BlsI	GCNGC	2 cut(s)	471, 474
BmeRI	GACNNNNNGTC	1 cut(s)	293
BmeT110I	CYCGRG	1 cut(s)	494
BmiI	GGNNCC	2 cut(s)	320, 482
BmsI	GCATC	1 cut(s)	480
BsaAI	YACGTR	1 cut(s)	503
BsaHI	GRCGYC	1 cut(s)	580
BsaWI	WCCGGW	2 cut(s)	113, 237
BsaXI	ACNNNNNCTCC	2 cut(s)	303, 333
Bsc4I	CCNNNNNNNGG	1 cut(s)	449
Bse118I	RCCGGY	1 cut(s)	237
Bse3DI	GCAATG	1 cut(s)	153
BseGI	GGATG	2 cut(s)	93, 211
BseLI	CCNNNNNNNGG	1 cut(s)	449
BseMI	GCAATG	1 cut(s)	153
BseRI	GAGGAG	1 cut(s)	371
BseXI	GCAGC	2 cut(s)	456, 484
Bsh1236I	CGCG	1 cut(s)	461
Bsh1285I	CGRYCG	1 cut(s)	613
BshNI	GGYRCC	1 cut(s)	480
BshTI	ACCGGT	1 cut(s)	237
BsiEI	CGRYCG	1 cut(s)	613
BsiHKAI	GWGCWC	1 cut(s)	141
BsiHKCI	CYCGRG	1 cut(s)	494
BsiSI	CCGG	2 cut(s)	114, 238
BslFI	GGGAC	1 cut(s)	591
BslI	CCNNNNNNNGG	1 cut(s)	449
BsmAI	GTCTC	2 cut(s)	250, 270
BsmBI	CGTCTC	1 cut(s)	270
BsmFI	GGGAC	1 cut(s)	591
BsoBI	CYCGRG	1 cut(s)	494
Bsp1286I	GDGCHC	1 cut(s)	141
Bsp143I	GATC	3 cut(s)	51, 370, 610
BspFNI	CGCG	1 cut(s)	461
BspLI	GGNNCC	2 cut(s)	320, 482
BspMAI	CTGCAG	1 cut(s)	474
BspPI	GGATC	1 cut(s)	378
BspT107I	GGYRCC	1 cut(s)	480
BsrDI	GCAATG	1 cut(s)	153
BsrFI	RCCGGY	1 cut(s)	237
BssAI	RCCGGY	1 cut(s)	237
BssMI	GATC	3 cut(s)	51, 370, 610
BssNI	GRCGYC	1 cut(s)	580
Bst4CI	ACNGT	2 cut(s)	390, 551
Bst6I	CTCTTC	1 cut(s)	348
BstACI	GRCGYC	1 cut(s)	580
BstBAI	YACGTR	1 cut(s)	503
BstC8I	GCNNGC	2 cut(s)	18, 363
BstENI	CCTNNNNNAGG	1 cut(s)	447
BstF5I	GGATG	2 cut(s)	93, 211
BstFNI	CGCG	1 cut(s)	461
BstH2I	RGCGCY	1 cut(s)	350
BstHHI	GCGC	2 cut(s)	349, 461
BstKTI	GATC	3 cut(s)	54, 373, 613
BstMAI	GTCTC	2 cut(s)	250, 270
BstMBI	GATC	3 cut(s)	51, 370, 610
BstMCI	CGRYCG	1 cut(s)	613
BstSFI	CTRYAG	1 cut(s)	470
BstUI	CGCG	1 cut(s)	461
BstV1I	GCAGC	2 cut(s)	456, 484
BstX2I	RGATCY	1 cut(s)	370
BstYI	RGATCY	1 cut(s)	370
BtgZI	GCGATG	2 cut(s)	380, 503
BtsCI	GGATG	2 cut(s)	93, 211
Cac8I	GCNNGC	2 cut(s)	18, 363
CfoI	GCGC	2 cut(s)	349, 461
Cfr10I	RCCGGY	1 cut(s)	237
Csp6I	GTAC	1 cut(s)	481
CspAI	ACCGGT	1 cut(s)	237
CviAII	CATG	1 cut(s)	621
CviJI	RGCY	9 cut(s)	139, 167, 196, 233, 302, 319, 361, 469, 527
CviKI_1	RGCY	9 cut(s)	139, 167, 196, 233, 302, 319, 361, 469, 527
CviQI	GTAC	1 cut(s)	481
DpnI	GATC	3 cut(s)	53, 372, 612
DpnII	GATC	3 cut(s)	51, 370, 610
DriI	GACNNNNNGTC	1 cut(s)	293
Eam1104I	CTCTTC	1 cut(s)	348
Eam1105I	GACNNNNNGTC	1 cut(s)	293
EarI	CTCTTC	1 cut(s)	348
Ecl136II	GAGCTC	1 cut(s)	139
Eco24I	GRGCYC	1 cut(s)	141
Eco53kI	GAGCTC	1 cut(s)	139
Eco88I	CYCGRG	1 cut(s)	494
EcoICRI	GAGCTC	1 cut(s)	139
EcoNI	CCTNNNNNAGG	1 cut(s)	447
EcoT38I	GRGCYC	1 cut(s)	141
Esp3I	CGTCTC	1 cut(s)	270
FaeI	CATG	1 cut(s)	624
FaiI	YATR	7 cut(s)	78, 201, 221, 306, 514, 524, 622
FalI	AAGNNNNNCTT	2 cut(s)	345, 377
FaqI	GGGAC	1 cut(s)	591
FatI	CATG	1 cut(s)	620
Fnu4HI	GCNGC	2 cut(s)	470, 473
FokI	GGATG	2 cut(s)	100, 198
FriOI	GRGCYC	1 cut(s)	141
Fsp4HI	GCNGC	2 cut(s)	470, 473
FspBI	CTAG	1 cut(s)	374
GlaI	GCGC	2 cut(s)	348, 460
GluI	GCNGC	2 cut(s)	470, 473
HaeII	RGCGCY	1 cut(s)	350
HapII	CCGG	2 cut(s)	114, 238
HhaI	GCGC	2 cut(s)	349, 461
Hin1I	GRCGYC	1 cut(s)	580
Hin1II	CATG	1 cut(s)	624
Hin6I	GCGC	2 cut(s)	347, 459
HinP1I	GCGC	2 cut(s)	347, 459
HindIII	AAGCTT	1 cut(s)	300
HinfI	GANTC	1 cut(s)	398
HpaII	CCGG	2 cut(s)	114, 238
Hpy188I	TCNGA	1 cut(s)	448
Hpy188III	TCNNGA	6 cut(s)	55, 172, 255, 374, 402, 614
Hpy99I	CGWCG	2 cut(s)	299, 585
HpyAV	CCTTC	7 cut(s)	58, 261, 309, 388, 443, 453, 457
HpyCH4III	ACNGT	2 cut(s)	390, 551
HpyCH4IV	ACGT	5 cut(s)	95, 106, 156, 502, 580
HpyCH4V	TGCA	1 cut(s)	472
HpySE526I	ACGT	5 cut(s)	95, 106, 156, 502, 580
Hsp92I	GRCGYC	1 cut(s)	580
Hsp92II	CATG	1 cut(s)	624
HspAI	GCGC	2 cut(s)	347, 459
KpnI	GGTACC	1 cut(s)	484
Kzo9I	GATC	3 cut(s)	51, 370, 610
LmnI	GCTCC	3 cut(s)	324, 358, 466
LpnPI	CCDG	4 cut(s)	127, 251, 298, 576
Lsp1109I	GCAGC	2 cut(s)	456, 484
LweI	GCATC	1 cut(s)	480
MaeI	CTAG	1 cut(s)	374
MaeII	ACGT	5 cut(s)	95, 106, 156, 502, 580
MaeIII	GTNAC	2 cut(s)	152, 498
MalI	GATC	3 cut(s)	53, 372, 612
MboI	GATC	3 cut(s)	51, 370, 610
MboII	GAAGA	5 cut(s)	39, 73, 235, 365, 555
MflI	RGATCY	1 cut(s)	370
MhlI	GDGCHC	1 cut(s)	141
MluCI	AATT	1 cut(s)	117
MnlI	CCTC	4 cut(s)	302, 337, 338, 349
MseI	TTAA	2 cut(s)	123, 242
MspI	CCGG	2 cut(s)	114, 238
MvnI	CGCG	1 cut(s)	461
NdeII	GATC	3 cut(s)	51, 370, 610
NlaIII	CATG	1 cut(s)	624
NlaIV	GGNNCC	2 cut(s)	320, 482
NmuCI	GTSAC	1 cut(s)	152
PaeR7I	CTCGAG	1 cut(s)	494
PcsI	WCGNNNNNNNCGW	1 cut(s)	577
PfeI	GAWTC	1 cut(s)	398
PinAI	ACCGGT	1 cut(s)	237
PkrI	GCNGC	2 cut(s)	471, 474
Ple19I	CGATCG	1 cut(s)	613
Ppu21I	YACGTR	1 cut(s)	503
PsiI	TTATAA	1 cut(s)	306
Psp124BI	GAGCTC	1 cut(s)	141
PspN4I	GGNNCC	2 cut(s)	320, 482
PspXI	VCTCGAGB	1 cut(s)	494
PstI	CTGCAG	1 cut(s)	474
PsuI	RGATCY	1 cut(s)	370
PvuI	CGATCG	1 cut(s)	613
RsaI	GTAC	1 cut(s)	482
RsaNI	GTAC	1 cut(s)	481
SacI	GAGCTC	1 cut(s)	141
SaqAI	TTAA	2 cut(s)	123, 242
SatI	GCNGC	2 cut(s)	470, 473
Sau3AI	GATC	3 cut(s)	51, 370, 610
SduI	GDGCHC	1 cut(s)	141
SfaNI	GCATC	1 cut(s)	480
SfcI	CTRYAG	1 cut(s)	470
Sfr274I	CTCGAG	1 cut(s)	494
SlaI	CTCGAG	1 cut(s)	494
SmlI	CTYRAG	1 cut(s)	494
SmoI	CTYRAG	1 cut(s)	494
Sse9I	AATT	1 cut(s)	117
SspMI	CTAG	1 cut(s)	374
SstI	GAGCTC	1 cut(s)	141
TaaI	ACNGT	2 cut(s)	390, 551
TaiI	ACGT	5 cut(s)	98, 109, 159, 505, 583
TaqI	TCGA	8 cut(s)	54, 254, 297, 351, 401, 495, 583, 609
TasI	AATT	1 cut(s)	117
TfiI	GAWTC	1 cut(s)	398
Tru1I	TTAA	2 cut(s)	123, 242
Tru9I	TTAA	2 cut(s)	123, 242
TseFI	GTSAC	1 cut(s)	152
TseI	GCWGC	2 cut(s)	469, 472
Tsp45I	GTSAC	1 cut(s)	152
TspDTI	ATGAA	5 cut(s)	74, 146, 236, 423, 549
TspGWI	ACGGA	1 cut(s)	204
XagI	CCTNNNNNAGG	1 cut(s)	447
XapI	RAATTY	1 cut(s)	117
XbaI	TCTAGA	1 cut(s)	373
XhoI	CTCGAG	1 cut(s)	494
XspI	CTAG	1 cut(s)	374
ZraI	GACGTC	1 cut(s)	581

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.