Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000341.1

Orthogroup ID

OG0003506

Physical Location & Seq

Genomic Coordinates Reverse (-)

48582 .. 50489

Gene Structure 1908 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_ssc0000341.1_g000016.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1011 bp

atggaaggcaggaagaccagaggacggcagaagattgaaataaagaaaattgcaaatgcagacgatcgccatgtcactttttcaaagaggagatctggcgtttacaaaaagtgcaacgagctagcaaccctatgcggtgcagaggttggtgtcgtggtgttctccgaatctgagaaaccattctcgtacggtaacccctctatcgaatccatagctgaccgattcttaaacctccagcctcctcaagaaaatagcgatgacaggatcgctgggtctcttgtgggagcatacaagcatgcaagatacatggagatactaaacaagcacaatgagttagaagacaagctcagggatgaacagcttcgagagaaagtacttctgcagaaagaaagagcaagagcaagtgcagagcaagaaggcctcggctggtggcagcgtcctattaaggagctagactcggaggaactaaaacaaatctctgctagggtttggggcggcggcgtctcctttgagattgtccttccctgtatctactccacttcagtggagtcattcacgggctttggagtgcaaggccattcatggtcttcggaggtcatccgcggtggtgttctggctgatggtgacgatggctgggtattctcttcgagcttgactattgggggaatatgggatcatggtgattttggtctttgggatcaagccggcggctttgcggaaggatccggatccagatctgggatccgggtggttttggcaaacgggttcggatctgggatccgggtggagattgggcttggtctatggctcactatctttggtgggttgtatatcagctacaagattggtttggcacttgtgcattactggtattggattcgagacccatgtttatggtatctgtttgtgaaagatcgcttgccaacatggccatgttctgacacccttggccggcttcgatctttaggtgggagagtgccttcattccggtgccaagttggtttttgttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0008150 GO:0009791 GO:0009888 GO:0009889 GO:0009960 GO:0010154 GO:0010468 GO:0010556 GO:0010817 GO:0019219 GO:0019222 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0032879 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0051049 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0065008 GO:0080090 GO:0140110 GO:1903506 GO:2000012 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04011 ko04111 map04011 map04111

Pfam Domains

Protein Families

SRF-TF

Protein Analysis

336

Amino Acids

37.57

Weight (kDa)

7.59

Isoelectric Point (pI)

42.02

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003506)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G28450 AT1G28460 AT1G29962 AT1G54760 AT3G04100
fragaria_vesca	FvH4_6g21070
malus_domestica	MD05G1287200.v1.1 MD10G1264600.v1.1 MD13G1257500.v1.1
prunus_persica	Prupe.1G087700_v2.0.a1 Prupe.4G077700_v2.0.a1 Prupe.5G243900_v2.0.a1
pyrus_communis	pycom05g26570 pycom10g22070
rosa_chinensis	RchiOBHm_Chr3g0477441 RchiOBHm_Chr3g0477451
rosa_laevigata	RLG00000023719 RLG00000023721
rosa_multiflora	Rmu_sc0005234.1_g000012 Rmu_ssc0000341.1_g000014 Rmu_ssc0000341.1_g000016
rosa_roxburghii	Rroxscaffold_6G00404150 Rroxscaffold_6G00404620 Rroxscaffold_6G00404630
rosa_rugosa	Rorug03G0160800 Rorug03G0160900
rosa_samantha	Rh3AG211100 Rh3AG211200 Rh3BG244500 Rh3BG244600 Rh3CG238300 Rh3CG238500 Rh3DG238000
rosa_wichuraiana	Rw3G019130 Rw3G019140

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	990
AccII	CGCG	1 cut(s)	603
AccIII	TCCGGA	1 cut(s)	725
AciI	CCGC	7 cut(s)	135, 495, 498, 601, 603, 708, 716
AcoI	YGGCCR	2 cut(s)	929, 949
AcuI	CTGAAG	1 cut(s)	525
AcyI	GRCGYC	1 cut(s)	501
AfaI	GTAC	2 cut(s)	188, 375
AfiI	CCNNNNNNNGG	3 cut(s)	24, 738, 951
AgsI	TTSAA	2 cut(s)	38, 84
AleI	CACNNNNGTG	1 cut(s)	542
AluBI	AGCT	7 cut(s)	121, 215, 346, 361, 451, 651, 837
AluI	AGCT	7 cut(s)	121, 215, 346, 361, 451, 651, 837
Alw26I	GTCTC	3 cut(s)	279, 508, 876
Aor13HI	TCCGGA	1 cut(s)	725
AoxI	GGCC	4 cut(s)	418, 574, 929, 949
ApeKI	GCWGC	1 cut(s)	433
Asp700I	GAANNNNTTC	2 cut(s)	179, 360
AsuC2I	CCSGG	2 cut(s)	746, 782
AsuHPI	GGTGA	2 cut(s)	635, 692
AsuNHI	GCTAGC	1 cut(s)	121
BalI	TGGCCA	1 cut(s)	931
BamHI	GGATCC	4 cut(s)	722, 728, 741, 777
BanI	GGYRCC	1 cut(s)	990
BbsI	GAAGAC	3 cut(s)	20, 345, 579
BbvI	GCAGC	1 cut(s)	445
BccI	CCATC	2 cut(s)	614, 623
BceAI	ACGGC	1 cut(s)	41
BcnI	CCSGG	2 cut(s)	746, 782
BcoDI	GTCTC	3 cut(s)	279, 508, 876
BfaI	CTAG	3 cut(s)	122, 452, 483
BfmI	CTRYAG	1 cut(s)	380
BglI	GCCNNNNNGGC	1 cut(s)	928
BglII	AGATCT	2 cut(s)	92, 734
BisI	GCNGC	4 cut(s)	434, 496, 499, 709
BlsI	GCNGC	4 cut(s)	435, 497, 500, 710
BmcAI	AGTACT	1 cut(s)	375
Bme1390I	CCNGG	2 cut(s)	746, 782
BmiI	GGNNCC	5 cut(s)	724, 730, 743, 779, 992
BmrFI	CCNGG	2 cut(s)	746, 782
BmtI	GCTAGC	1 cut(s)	125
BpiI	GAAGAC	3 cut(s)	20, 345, 579
BplI	GAGNNNNNCTC	2 cut(s)	440, 472
BpmI	CTGGAG	1 cut(s)	218
Bpu10I	CCTNAGC	1 cut(s)	347
BpuEI	CTTGAG	1 cut(s)	228
BpuMI	CCSGG	2 cut(s)	746, 782
BsaBI	GATNNNNATC	2 cut(s)	727, 733
BsaHI	GRCGYC	1 cut(s)	501
BsaI	GGTCTC	2 cut(s)	279, 876
BsaJI	CCNNGG	3 cut(s)	421, 601, 946
BsaWI	WCCGGW	2 cut(s)	725, 987
Bsc4I	CCNNNNNNNGG	3 cut(s)	24, 738, 951
Bse118I	RCCGGY	2 cut(s)	704, 951
Bse1I	ACTGG	1 cut(s)	872
Bse8I	GATNNNNATC	2 cut(s)	727, 733
BseAI	TCCGGA	1 cut(s)	725
BseDI	CCNNGG	3 cut(s)	421, 601, 946
BseGI	GGATG	2 cut(s)	358, 597
BseJI	GATNNNNATC	2 cut(s)	727, 733
BseLI	CCNNNNNNNGG	3 cut(s)	24, 738, 951
BseMII	CTCAG	2 cut(s)	162, 361
BseNI	ACTGG	1 cut(s)	872
BseRI	GAGGAG	2 cut(s)	103, 231
BseXI	GCAGC	1 cut(s)	445
BseYI	CCCAGC	2 cut(s)	269, 633
BsgI	GTGCAG	2 cut(s)	159, 426
Bsh1236I	CGCG	1 cut(s)	603
Bsh1285I	CGRYCG	1 cut(s)	67
BshFI	GGCC	4 cut(s)	420, 576, 931, 951
BshNI	GGYRCC	1 cut(s)	990
BsiEI	CGRYCG	1 cut(s)	67
BsiSI	CCGG	6 cut(s)	705, 726, 745, 781, 952, 988
BsiWI	CGTACG	1 cut(s)	186
BslI	CCNNNNNNNGG	3 cut(s)	24, 738, 951
BsmAI	GTCTC	3 cut(s)	279, 508, 876
BsmBI	CGTCTC	1 cut(s)	508
BsnI	GGCC	4 cut(s)	420, 576, 931, 951
Bso31I	GGTCTC	2 cut(s)	279, 876
Bsp13I	TCCGGA	1 cut(s)	725
BspACI	CCGC	7 cut(s)	135, 495, 498, 601, 603, 708, 716
BspANI	GGCC	4 cut(s)	420, 576, 931, 951
BspCNI	CTCAG	2 cut(s)	163, 360
BspEI	TCCGGA	1 cut(s)	725
BspFNI	CGCG	1 cut(s)	603
BspLI	GGNNCC	5 cut(s)	724, 730, 743, 779, 992
BspMAI	CTGCAG	1 cut(s)	384
BspOI	GCTAGC	1 cut(s)	125
BspT107I	GGYRCC	1 cut(s)	990
BspTNI	GGTCTC	2 cut(s)	279, 876
BsrFI	RCCGGY	2 cut(s)	704, 951
BsrI	ACTGG	1 cut(s)	872
BssAI	RCCGGY	2 cut(s)	704, 951
BssECI	CCNNGG	3 cut(s)	421, 601, 946
BssNI	GRCGYC	1 cut(s)	501
BssT1I	CCWWGG	1 cut(s)	946
Bst4CI	ACNGT	1 cut(s)	191
Bst6I	CTCTTC	1 cut(s)	649
BstACI	GRCGYC	1 cut(s)	501
BstC8I	GCNNGC	5 cut(s)	123, 297, 706, 920, 953
BstDEI	CTNAG	2 cut(s)	171, 347
BstDSI	CCRYGG	1 cut(s)	601
BstEII	GGTNACC	1 cut(s)	191
BstF5I	GGATG	2 cut(s)	358, 597
BstFNI	CGCG	1 cut(s)	603
BstMAI	GTCTC	3 cut(s)	279, 508, 876
BstMCI	CGRYCG	1 cut(s)	67
BstMWI	GCNNNNNNNGC	1 cut(s)	928
BstNSI	RCATGY	1 cut(s)	299
BstPI	GGTNACC	1 cut(s)	191
BstSCI	CCNGG	2 cut(s)	744, 780
BstSFI	CTRYAG	1 cut(s)	380
BstUI	CGCG	1 cut(s)	603
BstV1I	GCAGC	1 cut(s)	445
BstV2I	GAAGAC	3 cut(s)	20, 345, 579
BstX2I	RGATCY	7 cut(s)	92, 722, 728, 734, 741, 770, 777
BstXI	CCANNNNNNTGG	2 cut(s)	544, 894
BstYI	RGATCY	7 cut(s)	92, 722, 728, 734, 741, 770, 777
BsuRI	GGCC	4 cut(s)	420, 576, 931, 951
BtgI	CCRYGG	1 cut(s)	601
BtgZI	GCGATG	1 cut(s)	270
BtsCI	GGATG	2 cut(s)	358, 597
BtsIMutI	CAGTG	1 cut(s)	549
Cac8I	GCNNGC	5 cut(s)	123, 297, 706, 920, 953
Cfr10I	RCCGGY	2 cut(s)	704, 951
Cfr42I	CCGCGG	1 cut(s)	604
CseI	GACGC	2 cut(s)	425, 490
Csp6I	GTAC	2 cut(s)	187, 374
CviAII	CATG	8 cut(s)	71, 296, 307, 582, 677, 888, 927, 933
CviQI	GTAC	2 cut(s)	187, 374
DdeI	CTNAG	2 cut(s)	171, 347
EaeI	YGGCCR	2 cut(s)	929, 949
Eam1104I	CTCTTC	1 cut(s)	649
EarI	CTCTTC	1 cut(s)	649
Eco130I	CCWWGG	1 cut(s)	946
Eco147I	AGGCCT	1 cut(s)	420
Eco31I	GGTCTC	2 cut(s)	279, 876
Eco57I	CTGAAG	1 cut(s)	525
Eco91I	GGTNACC	1 cut(s)	191
EcoO65I	GGTNACC	1 cut(s)	191
EcoT14I	CCWWGG	1 cut(s)	946
ErhI	CCWWGG	1 cut(s)	946
Esp3I	CGTCTC	1 cut(s)	508
FaeI	CATG	8 cut(s)	74, 299, 310, 585, 680, 891, 930, 936
FatI	CATG	8 cut(s)	70, 295, 306, 581, 676, 887, 926, 932
Fnu4HI	GCNGC	4 cut(s)	434, 496, 499, 709
FokI	GGATG	2 cut(s)	365, 584
Fsp4HI	GCNGC	4 cut(s)	434, 496, 499, 709
FspBI	CTAG	3 cut(s)	122, 452, 483
GluI	GCNGC	4 cut(s)	434, 496, 499, 709
GsaI	CCCAGC	2 cut(s)	273, 637
GsuI	CTGGAG	1 cut(s)	218
HaeIII	GGCC	4 cut(s)	420, 576, 931, 951
HapII	CCGG	6 cut(s)	705, 726, 745, 781, 952, 988
HgaI	GACGC	2 cut(s)	425, 490
Hin1I	GRCGYC	1 cut(s)	501
Hin1II	CATG	8 cut(s)	74, 299, 310, 585, 680, 891, 930, 936
HinfI	GANTC	6 cut(s)	167, 206, 222, 455, 548, 877
HpaII	CCGG	6 cut(s)	705, 726, 745, 781, 952, 988
HphI	GGTGA	2 cut(s)	635, 692
Hpy166II	GTNNAC	1 cut(s)	103
Hpy188I	TCNGA	6 cut(s)	166, 172, 460, 592, 770, 940
Hpy188III	TCNNGA	5 cut(s)	245, 365, 726, 732, 881
Hpy8I	GTNNAC	1 cut(s)	103
HpyAV	CCTTC	4 cut(s)	410, 530, 713, 990
HpyCH4III	ACNGT	1 cut(s)	191
HpyCH4V	TGCA	9 cut(s)	53, 59, 114, 140, 299, 382, 407, 571, 862
HpyF10VI	GCNNNNNNNGC	1 cut(s)	928
HpyF3I	CTNAG	2 cut(s)	171, 347
Hsp92I	GRCGYC	1 cut(s)	501
Hsp92II	CATG	8 cut(s)	74, 299, 310, 585, 680, 891, 930, 936
Kpn2I	TCCGGA	1 cut(s)	725
KroI	GCCGGC	2 cut(s)	704, 951
KroNI	GCCGGC	2 cut(s)	706, 953
KspI	CCGCGG	1 cut(s)	604
LmnI	GCTCC	2 cut(s)	284, 448
Lsp1109I	GCAGC	1 cut(s)	445
MaeI	CTAG	3 cut(s)	122, 452, 483
MaeIII	GTNAC	3 cut(s)	73, 191, 623
MboII	GAAGA	5 cut(s)	25, 43, 350, 579, 636
MflI	RGATCY	7 cut(s)	92, 722, 728, 734, 741, 770, 777
MlsI	TGGCCA	1 cut(s)	931
MluCI	AATT	1 cut(s)	48
MluNI	TGGCCA	1 cut(s)	931
MlyI	GAGTC	2 cut(s)	449, 557
Mox20I	TGGCCA	1 cut(s)	931
MroI	TCCGGA	1 cut(s)	725
MroNI	GCCGGC	2 cut(s)	704, 951
MroXI	GAANNNNTTC	2 cut(s)	179, 360
MscI	TGGCCA	1 cut(s)	931
MseI	TTAA	3 cut(s)	227, 444, 1009
MslI	CAYNNNNRTG	4 cut(s)	542, 892, 931, 988
Msp20I	TGGCCA	1 cut(s)	931
MspA1I	CMGCKG	1 cut(s)	603
MspI	CCGG	6 cut(s)	705, 726, 745, 781, 952, 988
MspR9I	CCNGG	2 cut(s)	746, 782
MvnI	CGCG	1 cut(s)	603
MwoI	GCNNNNNNNGC	1 cut(s)	928
NaeI	GCCGGC	2 cut(s)	706, 953
NciI	CCSGG	2 cut(s)	746, 782
NgoMIV	GCCGGC	2 cut(s)	704, 951
NheI	GCTAGC	1 cut(s)	121
NlaIII	CATG	8 cut(s)	74, 299, 310, 585, 680, 891, 930, 936
NlaIV	GGNNCC	5 cut(s)	724, 730, 743, 779, 992
NmeAIII	GCCGAG	1 cut(s)	402
NmuCI	GTSAC	2 cut(s)	73, 623
NspI	RCATGY	1 cut(s)	299
OliI	CACNNNNGTG	1 cut(s)	542
PaeI	GCATGC	1 cut(s)	299
PceI	AGGCCT	1 cut(s)	420
PdiI	GCCGGC	2 cut(s)	706, 953
PdmI	GAANNNNTTC	2 cut(s)	179, 360
PfeI	GAWTC	4 cut(s)	167, 206, 222, 877
Pfl23II	CGTACG	1 cut(s)	186
PkrI	GCNGC	4 cut(s)	435, 497, 500, 710
Ple19I	CGATCG	1 cut(s)	67
PleI	GAGTC	2 cut(s)	449, 556
PpsI	GAGTC	2 cut(s)	449, 556
PspEI	GGTNACC	1 cut(s)	191
PspFI	CCCAGC	2 cut(s)	269, 633
PspLI	CGTACG	1 cut(s)	186
PspN4I	GGNNCC	5 cut(s)	724, 730, 743, 779, 992
PstI	CTGCAG	1 cut(s)	384
PsuI	RGATCY	7 cut(s)	92, 722, 728, 734, 741, 770, 777
PvuI	CGATCG	1 cut(s)	67
RsaI	GTAC	2 cut(s)	188, 375
RsaNI	GTAC	2 cut(s)	187, 374
RseI	CAYNNNNRTG	4 cut(s)	542, 892, 931, 988
SacII	CCGCGG	1 cut(s)	604
SaqAI	TTAA	3 cut(s)	227, 444, 1009
SatI	GCNGC	4 cut(s)	434, 496, 499, 709
ScaI	AGTACT	1 cut(s)	375
SchI	GAGTC	2 cut(s)	449, 557
ScrFI	CCNGG	2 cut(s)	746, 782
SfcI	CTRYAG	1 cut(s)	380
Sfr303I	CCGCGG	1 cut(s)	604
SgrBI	CCGCGG	1 cut(s)	604
SmiMI	CAYNNNNRTG	4 cut(s)	542, 892, 931, 988
SmlI	CTYRAG	1 cut(s)	243
SmoI	CTYRAG	1 cut(s)	243
SphI	GCATGC	1 cut(s)	299
Sse9I	AATT	1 cut(s)	48
SseBI	AGGCCT	1 cut(s)	420
SsiI	CCGC	7 cut(s)	135, 495, 498, 601, 603, 708, 716
SspMI	CTAG	3 cut(s)	122, 452, 483
StuI	AGGCCT	1 cut(s)	420
StyD4I	CCNGG	2 cut(s)	744, 780
StyI	CCWWGG	1 cut(s)	946
TaaI	ACNGT	1 cut(s)	191
TaqI	TCGA	5 cut(s)	204, 364, 647, 880, 958
TaqII	GACCGA	1 cut(s)	234
TasI	AATT	1 cut(s)	48
TatI	WGTACW	1 cut(s)	373
TauI	GCSGC	3 cut(s)	498, 501, 711
TfiI	GAWTC	4 cut(s)	167, 206, 222, 877
Tru1I	TTAA	3 cut(s)	227, 444, 1009
Tru9I	TTAA	3 cut(s)	227, 444, 1009
TscAI	CASTG	1 cut(s)	549
TseFI	GTSAC	2 cut(s)	73, 623
TseI	GCWGC	1 cut(s)	433
Tsp45I	GTSAC	2 cut(s)	73, 623
TspDTI	ATGAA	3 cut(s)	369, 570, 972
TspRI	CASTG	1 cut(s)	549
XceI	RCATGY	1 cut(s)	299
XmnI	GAANNNNTTC	2 cut(s)	179, 360
XspI	CTAG	3 cut(s)	122, 452, 483
ZrmI	AGTACT	1 cut(s)	375

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.