Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000006

Orthogroup ID

OG0003506

Physical Location & Seq

Genomic Coordinates Reverse (-)

26642811 .. 26643395

Gene Structure 585 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_6G00404150.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 585 bp

ATGGAAGGCAGGAAGACCAGAGGACGGCAGAAGATTGAAATAAAGAAAATTGCAAATGCAGACGATCGCCATGTCACTTTTTCAAAGAGGAGATCTGGCGTTTACAAAAAGTGCAACGAGCTAGCAACCCTATGCGGTGCAGAGGTTGGTGTCGTGGTGTTCTCCGAATCTGAGAAACCATTCTCGTACGGTAACCCCTCTATCGAATCCATAGCTGACCGATTCTTAAATCTCCAGCCTCCTCAAGAAAATAGCGATGACAGGATCGCTGGTTCTCTTGTGGGAGCATACAAGCATGCAAGATACATGGAGATACTGAACAAGCACAATGAGTTAGAAGACAAGCTCAGGGATGAACAGCTTCGAGAGAAAGTACTTCTGCAGAAAGAAAGAGCAAGAGCAAGTGCAGAGCAAGGAGGCCTCGGCTGGTGGCAGCGTCCTATTAAGGAGCTAGACTCGGAGGAACTAAAACAAATGTATGCTTCCTTCCAGCACCTCCACAATAGTCTCTCTAATCATCTGGTTCATCTCAATGTTGCCACCCATAATGTTAATAATAATAACAATATTATTAACATGCAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0008150 GO:0009791 GO:0009888 GO:0009889 GO:0009960 GO:0010154 GO:0010468 GO:0010556 GO:0010817 GO:0019219 GO:0019222 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0032879 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0051049 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0065008 GO:0080090 GO:0140110 GO:1903506 GO:2000012 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04011 ko04111 map04011 map04111

Pfam Domains

Protein Families

SRF-TF

Protein Analysis

194

Amino Acids

22.26

Weight (kDa)

8.82

Isoelectric Point (pI)

53.49

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SRF-TF	PF00319	16 - 63	1.3e-21	SRF-type transcription factor (DNA-binding and dimerisation domain)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0003506)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G28450 AT1G28460 AT1G29962 AT1G54760 AT3G04100
fragaria_vesca	FvH4_6g21070
malus_domestica	MD05G1287200.v1.1 MD10G1264600.v1.1 MD13G1257500.v1.1
prunus_persica	Prupe.1G087700_v2.0.a1 Prupe.4G077700_v2.0.a1 Prupe.5G243900_v2.0.a1
pyrus_communis	pycom05g26570 pycom10g22070
rosa_chinensis	RchiOBHm_Chr3g0477441 RchiOBHm_Chr3g0477451
rosa_laevigata	RLG00000023719 RLG00000023721
rosa_multiflora	Rmu_sc0005234.1_g000012 Rmu_ssc0000341.1_g000014 Rmu_ssc0000341.1_g000016
rosa_roxburghii	Rroxscaffold_6G00404150 Rroxscaffold_6G00404620 Rroxscaffold_6G00404630
rosa_rugosa	Rorug03G0160800 Rorug03G0160900
rosa_samantha	Rh3AG211100 Rh3AG211200 Rh3BG244500 Rh3BG244600 Rh3CG238300 Rh3CG238500 Rh3DG238000
rosa_wichuraiana	Rw3G019130 Rw3G019140

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	135
AclWI	GGATC	1 cut(s)	272
AfaI	GTAC	2 cut(s)	188, 375
AfiI	CCNNNNNNNGG	1 cut(s)	24
AgsI	TTSAA	2 cut(s)	38, 84
AloI	GAACNNNNNNTCC	2 cut(s)	256, 288
AluBI	AGCT	5 cut(s)	121, 215, 346, 361, 451
AluI	AGCT	5 cut(s)	121, 215, 346, 361, 451
Alw26I	GTCTC	1 cut(s)	512
AlwI	GGATC	1 cut(s)	272
AoxI	GGCC	1 cut(s)	418
ApeKI	GCWGC	1 cut(s)	433
Asp700I	GAANNNNTTC	2 cut(s)	179, 360
AsuNHI	GCTAGC	1 cut(s)	121
BarI	GAAGNNNNNNTAC	2 cut(s)	470, 502
BbsI	GAAGAC	2 cut(s)	20, 345
BbvI	GCAGC	1 cut(s)	445
BceAI	ACGGC	1 cut(s)	41
BcoDI	GTCTC	1 cut(s)	512
BfaI	CTAG	2 cut(s)	122, 452
BfmI	CTRYAG	1 cut(s)	380
BglII	AGATCT	1 cut(s)	92
BisI	GCNGC	1 cut(s)	434
BlsI	GCNGC	1 cut(s)	435
BmcAI	AGTACT	1 cut(s)	375
BmtI	GCTAGC	1 cut(s)	125
BpiI	GAAGAC	2 cut(s)	20, 345
BplI	GAGNNNNNCTC	2 cut(s)	440, 472
BpmI	CTGGAG	1 cut(s)	218
Bpu10I	CCTNAGC	1 cut(s)	347
BpuEI	CTTGAG	1 cut(s)	228
BsaJI	CCNNGG	1 cut(s)	421
Bsc4I	CCNNNNNNNGG	1 cut(s)	24
BseDI	CCNNGG	1 cut(s)	421
BseGI	GGATG	1 cut(s)	358
BseLI	CCNNNNNNNGG	1 cut(s)	24
BseMII	CTCAG	2 cut(s)	162, 361
BseRI	GAGGAG	2 cut(s)	103, 231
BseXI	GCAGC	1 cut(s)	445
BsgI	GTGCAG	2 cut(s)	159, 426
Bsh1285I	CGRYCG	1 cut(s)	67
BshFI	GGCC	1 cut(s)	420
BsiEI	CGRYCG	1 cut(s)	67
BsiWI	CGTACG	1 cut(s)	186
BslI	CCNNNNNNNGG	1 cut(s)	24
BsmAI	GTCTC	1 cut(s)	512
BsnI	GGCC	1 cut(s)	420
Bsp143I	GATC	3 cut(s)	64, 92, 264
BspACI	CCGC	1 cut(s)	135
BspANI	GGCC	1 cut(s)	420
BspCNI	CTCAG	2 cut(s)	163, 360
BspMAI	CTGCAG	1 cut(s)	384
BspOI	GCTAGC	1 cut(s)	125
BspPI	GGATC	1 cut(s)	272
BssECI	CCNNGG	1 cut(s)	421
BssMI	GATC	3 cut(s)	64, 92, 264
Bst4CI	ACNGT	1 cut(s)	191
BstC8I	GCNNGC	2 cut(s)	123, 297
BstDEI	CTNAG	2 cut(s)	171, 347
BstEII	GGTNACC	1 cut(s)	191
BstF5I	GGATG	1 cut(s)	358
BstKTI	GATC	3 cut(s)	67, 95, 267
BstMAI	GTCTC	1 cut(s)	512
BstMBI	GATC	3 cut(s)	64, 92, 264
BstMCI	CGRYCG	1 cut(s)	67
BstNSI	RCATGY	2 cut(s)	299, 580
BstPI	GGTNACC	1 cut(s)	191
BstSFI	CTRYAG	1 cut(s)	380
BstV1I	GCAGC	1 cut(s)	445
BstV2I	GAAGAC	2 cut(s)	20, 345
BstX2I	RGATCY	1 cut(s)	92
BstYI	RGATCY	1 cut(s)	92
BsuRI	GGCC	1 cut(s)	420
BtgZI	GCGATG	1 cut(s)	270
BtsCI	GGATG	1 cut(s)	358
Cac8I	GCNNGC	2 cut(s)	123, 297
CseI	GACGC	1 cut(s)	425
Csp6I	GTAC	2 cut(s)	187, 374
CviAII	CATG	4 cut(s)	71, 296, 307, 577
CviJI	RGCY	8 cut(s)	121, 215, 238, 346, 361, 420, 426, 451
CviKI_1	RGCY	8 cut(s)	121, 215, 238, 346, 361, 420, 426, 451
CviQI	GTAC	2 cut(s)	187, 374
DdeI	CTNAG	2 cut(s)	171, 347
DpnI	GATC	3 cut(s)	66, 94, 266
DpnII	GATC	3 cut(s)	64, 92, 264
Eco147I	AGGCCT	1 cut(s)	420
Eco91I	GGTNACC	1 cut(s)	191
EcoO65I	GGTNACC	1 cut(s)	191
FaeI	CATG	4 cut(s)	74, 299, 310, 580
FaiI	YATR	9 cut(s)	72, 133, 212, 289, 297, 308, 480, 546, 578
FatI	CATG	4 cut(s)	70, 295, 306, 576
Fnu4HI	GCNGC	1 cut(s)	434
FokI	GGATG	1 cut(s)	365
Fsp4HI	GCNGC	1 cut(s)	434
FspBI	CTAG	2 cut(s)	122, 452
GluI	GCNGC	1 cut(s)	434
GsuI	CTGGAG	1 cut(s)	218
HaeIII	GGCC	1 cut(s)	420
HgaI	GACGC	1 cut(s)	425
Hin1II	CATG	4 cut(s)	74, 299, 310, 580
HinfI	GANTC	4 cut(s)	167, 206, 222, 455
Hpy166II	GTNNAC	1 cut(s)	103
Hpy188I	TCNGA	3 cut(s)	166, 172, 460
Hpy188III	TCNNGA	2 cut(s)	245, 365
Hpy8I	GTNNAC	1 cut(s)	103
HpyAV	CCTTC	1 cut(s)	496
HpyCH4III	ACNGT	1 cut(s)	191
HpyCH4V	TGCA	8 cut(s)	53, 59, 114, 140, 299, 382, 407, 580
HpyF3I	CTNAG	2 cut(s)	171, 347
Hsp92II	CATG	4 cut(s)	74, 299, 310, 580
Kzo9I	GATC	3 cut(s)	64, 92, 264
LmnI	GCTCC	2 cut(s)	284, 448
LpnPI	CCDG	9 cut(s)	31, 81, 247, 248, 255, 334, 412, 503, 506
Lsp1109I	GCAGC	1 cut(s)	445
MaeI	CTAG	2 cut(s)	122, 452
MaeIII	GTNAC	2 cut(s)	73, 191
MalI	GATC	3 cut(s)	66, 94, 266
MboI	GATC	3 cut(s)	64, 92, 264
MboII	GAAGA	3 cut(s)	25, 43, 350
MflI	RGATCY	1 cut(s)	92
MluCI	AATT	1 cut(s)	48
MlyI	GAGTC	1 cut(s)	449
MroXI	GAANNNNTTC	2 cut(s)	179, 360
MseI	TTAA	4 cut(s)	227, 444, 552, 573
MslI	CAYNNNNRTG	1 cut(s)	531
NdeII	GATC	3 cut(s)	64, 92, 264
NheI	GCTAGC	1 cut(s)	121
NlaIII	CATG	4 cut(s)	74, 299, 310, 580
NmeAIII	GCCGAG	1 cut(s)	402
NmuCI	GTSAC	1 cut(s)	73
NspI	RCATGY	2 cut(s)	299, 580
PaeI	GCATGC	1 cut(s)	299
PceI	AGGCCT	1 cut(s)	420
PdmI	GAANNNNTTC	2 cut(s)	179, 360
PfeI	GAWTC	3 cut(s)	167, 206, 222
Pfl23II	CGTACG	1 cut(s)	186
PkrI	GCNGC	1 cut(s)	435
Ple19I	CGATCG	1 cut(s)	67
PleI	GAGTC	1 cut(s)	449
PpsI	GAGTC	1 cut(s)	449
PspEI	GGTNACC	1 cut(s)	191
PspLI	CGTACG	1 cut(s)	186
PstI	CTGCAG	1 cut(s)	384
PsuI	RGATCY	1 cut(s)	92
PvuI	CGATCG	1 cut(s)	67
RsaI	GTAC	2 cut(s)	188, 375
RsaNI	GTAC	2 cut(s)	187, 374
RseI	CAYNNNNRTG	1 cut(s)	531
SaqAI	TTAA	4 cut(s)	227, 444, 552, 573
SatI	GCNGC	1 cut(s)	434
Sau3AI	GATC	3 cut(s)	64, 92, 264
ScaI	AGTACT	1 cut(s)	375
SchI	GAGTC	1 cut(s)	449
SetI	ASST	7 cut(s)	123, 147, 217, 348, 363, 453, 498
SfcI	CTRYAG	1 cut(s)	380
SmiMI	CAYNNNNRTG	1 cut(s)	531
SmlI	CTYRAG	1 cut(s)	243
SmoI	CTYRAG	1 cut(s)	243
SphI	GCATGC	1 cut(s)	299
Sse9I	AATT	1 cut(s)	48
SseBI	AGGCCT	1 cut(s)	420
SsiI	CCGC	1 cut(s)	135
SspI	AATATT	1 cut(s)	568
SspMI	CTAG	2 cut(s)	122, 452
StuI	AGGCCT	1 cut(s)	420
TaaI	ACNGT	1 cut(s)	191
TaqI	TCGA	2 cut(s)	204, 364
TaqII	GACCGA	1 cut(s)	234
TasI	AATT	1 cut(s)	48
TatI	WGTACW	1 cut(s)	373
TfiI	GAWTC	3 cut(s)	167, 206, 222
Tru1I	TTAA	4 cut(s)	227, 444, 552, 573
Tru9I	TTAA	4 cut(s)	227, 444, 552, 573
TseFI	GTSAC	1 cut(s)	73
TseI	GCWGC	1 cut(s)	433
Tsp45I	GTSAC	1 cut(s)	73
TspDTI	ATGAA	2 cut(s)	369, 515
XceI	RCATGY	2 cut(s)	299, 580
XmnI	GAANNNNTTC	2 cut(s)	179, 360
XspI	CTAG	2 cut(s)	122, 452
ZrmI	AGTACT	1 cut(s)	375

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.